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Hiroshi Akashi - Publications

Affiliations: 
Pennsylvania State University, State College, PA, United States 
Area:
molecular evolution
Website:
http://www.bio.psu.edu/People/Faculty/Akashi/
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Matsumoto T, Akashi H. Distinguishing Among Evolutionary Forces Acting on Genome-Wide Base Composition: Computer Simulation Analysis of Approximate Methods for Inferring Site Frequency Spectra of Derived Mutations in Recombining Regions. G3 (Bethesda, Md.). PMID 29588382 DOI: 10.1534/g3.117.300512  0.478
2016 Matsumoto T, John A, Baeza-Centurion P, Li B, Akashi H. Codon usage selection can bias estimation of the fraction of adaptive amino acid fixations. Molecular Biology and Evolution. PMID 26873577 DOI: 10.1093/molbev/msw027  0.375
2015 Mallik S, Akashi H, Kundu S. Assembly constraints drive co-evolution among ribosomal constituents. Nucleic Acids Research. 43: 5352-63. PMID 25956649 DOI: 10.1093/nar/gkv448  0.368
2015 Matsumoto T, Akashi H, Yang Z. Evaluation of Ancestral Sequence Reconstruction Methods to Infer Nonstationary Patterns of Nucleotide Substitution. Genetics. 200: 873-90. PMID 25948563 DOI: 10.1534/Genetics.115.177386  0.413
2012 Akashi H, Osada N, Ohta T. Weak selection and protein evolution. Genetics. 192: 15-31. PMID 22964835 DOI: 10.1534/Genetics.112.140178  0.461
2012 Tezuka A, Matsushima N, Nemoto Y, Akashi HD, Kawata M, Makino T. Comprehensive primer design for analysis of population genetics in non-sequenced organisms. Plos One. 7: e32314. PMID 22393396 DOI: 10.1371/journal.pone.0032314  0.342
2012 Osada N, Akashi H. Mitochondrial-nuclear interactions and accelerated compensatory evolution: evidence from the primate cytochrome C oxidase complex. Molecular Biology and Evolution. 29: 337-46. PMID 21890478 DOI: 10.1093/molbev/msr211  0.444
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Akashi H, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.685
2007 Akashi H, Goel P, John A. Ancestral inference and the study of codon bias evolution: implications for molecular evolutionary analyses of the Drosophila melanogaster subgroup. Plos One. 2: e1065. PMID 17957249 DOI: 10.1371/journal.pone.0001065  0.528
2006 Ko WY, Piao S, Akashi H. Strong regional heterogeneity in base composition evolution on the Drosophila X chromosome. Genetics. 174: 349-62. PMID 16547109 DOI: 10.1534/Genetics.105.054346  0.691
2006 Akashi H, Ko WY, Piao S, John A, Goel P, Lin CF, Vitins AP. Molecular evolution in the Drosophila melanogaster species subgroup: frequent parameter fluctuations on the timescale of molecular divergence. Genetics. 172: 1711-26. PMID 16387879 DOI: 10.1534/Genetics.105.049676  0.711
2003 Ko WY, David RM, Akashi H. Molecular phylogeny of the Drosophila melanogaster species subgroup. Journal of Molecular Evolution. 57: 562-73. PMID 14738315 DOI: 10.1007/S00239-003-2510-X  0.651
2001 Akashi H. Gene expression and molecular evolution. Current Opinion in Genetics & Development. 11: 660-666. PMID 11682310 DOI: 10.1016/S0959-437X(00)00250-1  0.467
2000 Iida K, Akashi H. A test of translational selection at 'silent' sites in the human genome: Base composition comparisons in alternatively spliced genes Gene. 261: 93-105. PMID 11164041 DOI: 10.1016/S0378-1119(00)00482-0  0.479
1999 Akashi H. Within- and between-species DNA sequence variation and the 'footprint' of natural selection. Gene. 238: 39-51. PMID 10570982 DOI: 10.1016/S0378-1119(99)00294-2  0.471
1999 Akashi H, Eyre-Walker A. Translational selection and molecular evolution. Current Opinion in Genetics & Development. 8: 688-93. PMID 9914211 DOI: 10.1016/S0959-437X(98)80038-5  0.4
1998 Akashi H, Kliman RM, Eyre-Walker A. Mutation pressure, natural selection, and the evolution of base composition in Drosophila. Genetica. 102: 49-60. DOI: 10.1023/A:1017078607465  0.516
1997 Akashi H. Codon bias evolution in Drosophila. Population genetics of mutation-selection drift Gene. 205: 269-278. PMID 9461401 DOI: 10.1016/S0378-1119(97)00400-9  0.48
1995 Dorit RL, Akashi H, Gilbert W. Absence of polymorphism at the ZFY locus on the human Y chromosome. Science (New York, N.Y.). 268: 1183-5. PMID 7761836 DOI: 10.1126/Science.7761836  0.371
1995 Kreitman M, Akashi H. Molecular Evidence for Natural Selection Annual Review of Ecology and Systematics. 26: 403-422. DOI: 10.1146/ANNUREV.ES.26.110195.002155  0.629
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