Stephen W. Schaeffer, B.S., M.S., Ph.D. - Related publications

Biology Pennsylvania State University, State College, PA, United States 
Evolutionary Genetics and Genomics
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Rivard EL, Ludwig AG, Patel PH, Grandchamp A, Arnold SE, Berger A, Scott EM, Kelly BJ, Mascha GC, Bornberg-Bauer E, Findlay GD. A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster. Plos Genetics. 17: e1009787. PMID 34478447 DOI: 10.1371/journal.pgen.1009787   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Evans BJ, Peter BM, Melnick DJ, Andayani N, Supriatna J, Zhu J, Tosi AJ. Mitonuclear interactions and introgression genomics of macaque monkeys () highlight the influence of behaviour on genome evolution. Proceedings. Biological Sciences. 288: 20211756. PMID 34610767 DOI: 10.1098/rspb.2021.1756   
2021 Takeda I, Araki M, Ishiguro KI, Ohga T, Takada K, Yamaguchi Y, Hashimoto K, Kai T, Nakagata N, Imasaka M, Yoshinobu K, Araki K. Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 34418226 DOI: 10.1111/gtc.12890   
2021 Cavassim MIA, Andersen SU, Bataillon T, Schierup MH. Recombination facilitates adaptive evolution in rhizobial soil bacteria. Molecular Biology and Evolution. PMID 34410427 DOI: 10.1093/molbev/msab247   
2021 Zhang L, Wang S, Su C, Harris AJ, Zhao L, Su N, Wang JR, Duan L, Chang ZY. Comparative Chloroplast Genomics and Phylogenetic Analysis of (Zygophyllaceae) of China. Frontiers in Plant Science. 12: 723622. PMID 34630471 DOI: 10.3389/fpls.2021.723622   
2021 Van Dam MH, Cabras AA, Henderson JB, Rominger AJ, Pérez Estrada C, Omer AD, Dudchenko O, Lieberman Aiden E, Lam AW. The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution. Plos Genetics. 17: e1009745. PMID 34460814 DOI: 10.1371/journal.pgen.1009745   
2021 Ulaszewski B, Meger J, Mishra B, Thines M, Burczyk J. Complete Chloroplast Genomes of L. Reveal Sequence Conservation in the Inverted Repeat and the Presence of Allelic Variation in NUPTs. Genes. 12. PMID 34573338 DOI: 10.3390/genes12091357   
2021 Lauria Sneideman MP, Meller VH. Drosophila Satellite Repeats at the Intersection of Chromatin, Gene Regulation and Evolution. Progress in Molecular and Subcellular Biology. 60: 1-26. PMID 34386870 DOI: 10.1007/978-3-030-74889-0_1   
2021 Guo Y, Wariss HM, Zhang R. The complete chloroplast genome of (L.) Goldblatt & J. C. Manning (Leguminosae), an important medicinal plant species from Southern Africa. Mitochondrial Dna. Part B, Resources. 6: 2767-2769. PMID 34471699 DOI: 10.1080/23802359.2021.1967811   
2021 Kapun M, Nunez JCB, Bogaerts-Márquez M, Murga-Moreno J, Paris M, Outten J, Coronado-Zamora M, Tern C, Rota-Stabelli O, García Guerreiro MP, Casillas S, Orengo DJ, Puerma E, Kankare M, Ometto L, et al. Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource. Molecular Biology and Evolution. PMID 34469576 DOI: 10.1093/molbev/msab259   
2021 Kim A, Shin JY, Seo JS. Genomic and transcriptomic analyses reveal a tandem amplification unit of 11 genes and mutations in mismatch repair genes in methotrexate-resistant HT-29 cells. Experimental & Molecular Medicine. PMID 34521988 DOI: 10.1038/s12276-021-00668-x   
2021 Li C, Chen X, Zheng W, Doak TG, Fan G, Song W, Yan Y. Chromosome organization and gene expansion in the highly fragmented genome of the ciliate Strombidium stylifer. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34452852 DOI: 10.1016/j.jgg.2021.05.014   
2021 Lioy VS, Lorenzi JN, Najah S, Poinsignon T, Leh H, Saulnier C, Aigle B, Lautru S, Thibessard A, Lespinet O, Leblond P, Jaszczyszyn Y, Gorrichon K, Varoquaux N, Junier I, et al. Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation. Nature Communications. 12: 5221. PMID 34471117 DOI: 10.1038/s41467-021-25462-1   
2021 Ju X, Shi G, Chen S, Dai W, He T. Characterization and phylogenetic analysis of the complete chloroplast genome of (Liliaceae). Mitochondrial Dna. Part B, Resources. 6: 2750-2751. PMID 34471694 DOI: 10.1080/23802359.2021.1967799   
2021 Chen H, Li X, Wang Y, Zhu C, Huang H, Yang W, Li G. De Novo Transcriptomic Characterization Enables Novel Microsatellite Identification and Marker Development in . Life (Basel, Switzerland). 11. PMID 34440547 DOI: 10.3390/life11080803   
2021 Zhou J, Du Q, Jiang M, Liu S, Wang L, Chen H, Wang B, Liu C. Characterization and comparative analysis of the plastome sequence from (Lamiales: Acanthaceae). Mitochondrial Dna. Part B, Resources. 6: 2896-2902. PMID 34604529 DOI: 10.1080/23802359.2021.1922099   
2021 Luzuriaga-Aveiga VE, Ugarte M, Weir JT. Distinguishing genomic homogenization from parapatric speciation in an elevationally replacing pair of Ramphocelus tanagers. Molecular Ecology. PMID 34403554 DOI: 10.1111/mec.16128   
2021 Zhang F, Wang N, Cheng G, Shu X, Wang T, Zhuang W, Lu R, Wang Z. Comparative Chloroplast Genomes of Four Species (Amaryllidaceae) Provides New Insight into Interspecific Relationship and Phylogeny. Biology. 10. PMID 34439948 DOI: 10.3390/biology10080715   
2021 Hao J, Liang Y, Zhu M, Ping J, Feng P, Su Y, Wang T. The complete chloroplast genome of L. (Ophioglossaceae) and phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 2730-2731. PMID 34447885 DOI: 10.1080/23802359.2021.1966333   
2021 Huang CH, Chen CC, Lin YC, Chen CH, Lee AY, Liou JS, Gu CT, Huang L. The Gene as a Genome-Wide Taxonomic Marker for High Resolution Discrimination of and Its Closely Related Taxa. Microorganisms. 9. PMID 34442649 DOI: 10.3390/microorganisms9081570   
2021 Yates TB, Feng K, Zhang J, Singan V, Jawdy SS, Gunter LE, Ranjan P, Abraham PE, Barry K, Lipzen A, Pan C, Schmutz J, Chen JG, Tuskan GA, Muchero W. The ancient Salicoid genome duplication event: A platform for reconstruction of de Novo gene evolution in Populus trichocarpa. Genome Biology and Evolution. PMID 34469536 DOI: 10.1093/gbe/evab198   
2021 Li Y, Liu H, Zou J. Complete chloroplast genome of : a species endemic to Guizhou, China. Mitochondrial Dna. Part B, Resources. 6: 2596-2598. PMID 34395889 DOI: 10.1080/23802359.2021.1961625   
2021 Foulongne-Oriol M, Taskent O, Kües U, Sonnenberg ASM, van Peer AF, Giraud T. Mating-Type Locus Organization and Mating-Type Chromosome Differentiation in the Bipolar Edible Button Mushroom . Genes. 12. PMID 34356095 DOI: 10.3390/genes12071079   
2021 Hall RJ, Whelan FJ, Cummins EA, Connor C, McNally A, McInerney JO. Gene-gene relationships in an accessory genome are linked to function and mobility. Microbial Genomics. 7. PMID 34499026 DOI: 10.1099/mgen.0.000650   
2021 Fan ZF, Yu DY, Ma CL. The complete chloroplast genome sequence of Rolfe, a vulnerable wild moth orchid species (Orchidaceae). Mitochondrial Dna. Part B, Resources. 6: 2903-2905. PMID 34532582 DOI: 10.1080/23802359.2021.1923420   
2021 Yamamoto T. Genomic Aberrations Associated with the Pathophysiological Mechanisms of Neurodevelopmental Disorders. Cells. 10. PMID 34571966 DOI: 10.3390/cells10092317   
2021 Zeng Q, Liu J, Wang C, Wang H, Zhang L, Hu J, Bao L, Wang S. High-quality reannotation of the king scallop genome reveals no 'gene-rich' feature and evolution of toxin resistance. Computational and Structural Biotechnology Journal. 19: 4954-4960. PMID 34527199 DOI: 10.1016/j.csbj.2021.08.038   
2021 Fuchs S, Garrood WT, Beber A, Hammond A, Galizi R, Gribble M, Morselli G, Hui TJ, Willis K, Kranjc N, Burt A, Crisanti A, Nolan T. Resistance to a CRISPR-based gene drive at an evolutionarily conserved site is revealed by mimicking genotype fixation. Plos Genetics. 17: e1009740. PMID 34610011 DOI: 10.1371/journal.pgen.1009740   
2021 Jiang N, Hu S, Peng B, Li Z, Yuan X, Xiao S, Fu Y. Genome of Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for . Frontiers in Microbiology. 12: 724451. PMID 34603250 DOI: 10.3389/fmicb.2021.724451   
2021 Dong NL, Wang W, Wang Z, Zhang YY, Shao YZ, Sun HZ. Characterization of the complete plastid genome of (Pinaceae) from southwest China. Mitochondrial Dna. Part B, Resources. 6: 2772-2774. PMID 34471700 DOI: 10.1080/23802359.2021.1969699   
2021 Song YF, Ye Q, Li M, Chen J, Yi XG, Wang XR, Wang SJ. The complete plastid genome of cherry plants (Rosaceae) and its phylogenetic implication. Mitochondrial Dna. Part B, Resources. 6: 2681-2682. PMID 34435117 DOI: 10.1080/23802359.2021.1935355   
2021 Tian C, Li X, Wu Z, Li Z, Hou X, Li FY. Characterization and Comparative Analysis of Complete Chloroplast Genomes of Three Species From the Genus (Leguminosae). Frontiers in Genetics. 12: 705482. PMID 34422006 DOI: 10.3389/fgene.2021.705482   
2021 Zhuo W, Wang L, Zhu X, Lu S, Ren F. Characterization of the first chloroplast genome of and its phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 2991-2992. PMID 34568557 DOI: 10.1080/23802359.2021.1975506   
2021 Heckel DG. Perspectives on gene copy number variation and pesticide resistance. Pest Management Science. PMID 34480789 DOI: 10.1002/ps.6631   
2021 Li X, Li Y, Sylvester SP, Zang M, El-Kassaby YA, Fang Y. Evolutionary patterns of nucleotide substitution rates in plastid genomes of . Ecology and Evolution. 11: 13401-13414. PMID 34646478 DOI: 10.1002/ece3.8063   
2021 Zhang Y, Deng C, Yang J, Wang D, Deng G. The complete chloroplast genome of a medicinal plant Burm.f. (Loranthaceae). Mitochondrial Dna. Part B, Resources. 6: 2635-2637. PMID 34435106 DOI: 10.1080/23802359.2021.1962760   
2021 Guo W, Comai L, Henry IM. Chromoanagenesis from radiation-induced genome damage in Populus. Plos Genetics. 17: e1009735. PMID 34432802 DOI: 10.1371/journal.pgen.1009735   
2021 Senderowicz M, Nowak T, Rojek-Jelonek M, Bisaga M, Papp L, Weiss-Schneeweiss H, Kolano B. Descending Dysploidy and Bidirectional Changes in Genome Size Accompanied (Asteraceae) Evolution. Genes. 12. PMID 34573417 DOI: 10.3390/genes12091436   
2021 Wang M, Yang J, Xue Q, Liu W, Niu Z, Ding X. The complete chloroplast genome sequence of (Orchidaceae). Mitochondrial Dna. Part B, Resources. 6: 2638-2639. PMID 34409163 DOI: 10.1080/23802359.2021.1962766   
2021 Li J. The complete chloroplast genome sequence of (Rhamnaceae) and its phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 2828-2829. PMID 34514142 DOI: 10.1080/23802359.2021.1915716   
2021 Lupande-Mwenebitu D, Khedher MB, Khabthani S, Rym L, Phoba MF, Nabti LZ, Lunguya-Metila O, Pantel A, Lavigne JP, Rolain JM, Diene SM. First Genome Description of Isolate Bearing NDM-1 from Blood Culture. Microorganisms. 9. PMID 34442831 DOI: 10.3390/microorganisms9081751   
2021 Cheng L, Xu Y, Li Z, Zhao Y, He F, Wang Y. MITOGENOME ANNOUNCEMENTSCharacterization of the complete chloroplast genome of the Chinese endangered species D. Don. Mitochondrial Dna. Part B, Resources. 6: 2665-2666. PMID 34435113 DOI: 10.1080/23802359.2021.1964398   
2021 Wijayasekara D, Ali A. Evolutionary study of maize dwarf mosaic virus using nearly complete genome sequences acquired by next-generation sequencing. Scientific Reports. 11: 18786. PMID 34552152 DOI: 10.1038/s41598-021-98299-9   
2021 Wold J, Koepfli KP, Galla SJ, Eccles D, Hogg CJ, Le Lec MF, Guhlin J, Santure AW, Steeves TE. Expanding the conservation genomics toolbox: incorporating structural variants to enhance genomic studies for species of conservation concern. Molecular Ecology. PMID 34424587 DOI: 10.1111/mec.16141   
2021 Fang X, Zhang S. The complete chloroplast genome sequence of (Hochst.) Steane & Mabb., a traditional medicinal plant. Mitochondrial Dna. Part B, Resources. 6: 2699-2700. PMID 34435124 DOI: 10.1080/23802359.2021.1966340   
2021 Liu J, Wang J, Wang M, Zhao J, Zheng Y, Zhang T, Xue L, Lei J. Genome-Wide Analysis of the R2R3-MYB Gene Family in × and Its Function Identification During Anthocyanins Biosynthesis in Pink-Flowered Strawberry. Frontiers in Plant Science. 12: 702160. PMID 34527006 DOI: 10.3389/fpls.2021.702160   
2021 Pang J, Hu W, Wang W, Li J, Mao K. The complete chloroplast genome of , a Critically Endangered species in New Caledonia. Mitochondrial Dna. Part B, Resources. 6: 2648-2649. PMID 34409167 DOI: 10.1080/23802359.2021.1964399   
2021 Xu Y, Wu KY, Gong BC. Characterization of the complete chloroplast genome sequence of cv. . Mitochondrial Dna. Part B, Resources. 6: 2951-2952. PMID 34553054 DOI: 10.1080/23802359.2021.1972869   
2021 Grochowski CM, Krepischi ACV, Eisfeldt J, Du H, Bertola DR, Oliveira D, Costa SS, Lupski JR, Lindstrand A, Carvalho CMB. Chromoanagenesis Event Underlies a Pericentric and Multiple Paracentric Inversions in a Single Chromosome Causing Coffin-Siris Syndrome. Frontiers in Genetics. 12: 708348. PMID 34512724 DOI: 10.3389/fgene.2021.708348