Patrick J. Keeling - Publications

Affiliations: 
1999  

287 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Gavelis GS, Herranz M, Wakeman KC, Ripken C, Mitarai S, Gile GH, Keeling PJ, Leander BS. Dinoflagellate nucleus contains an extensive endomembrane network, the nuclear net. Scientific Reports. 9: 839. PMID 30696854 DOI: 10.1038/s41598-018-37065-w  1
2018 Votýpka J, Kment P, Kriegová E, Vermeij MJA, Keeling PJ, Yurchenko V, Lukeš J. High Prevalence and Endemism of Trypanosomatids on a Small Caribbean Island. The Journal of Eukaryotic Microbiology. PMID 30480347 DOI: 10.1111/jeu.12704  0.6
2018 Strassert JFH, Hehenberger E, Del Campo J, Okamoto N, Kolisko M, Richards TA, Worden AZ, Santoro AE, Keeling PJ. Phylogeny, Evidence for a Cryptic Plastid, and Distribution of Chytriodinium Parasites (Dinophyceae) Infecting Copepods. The Journal of Eukaryotic Microbiology. PMID 30444565 DOI: 10.1111/jeu.12701  1
2018 Sakamoto H, Hirakawa Y, Ishida KI, Keeling PJ, Kita K, Matsuzaki M. Puromycin selection for stable transfectants of the oyster-infecting parasite Perkinsus marinus. Parasitology International. PMID 30389616 DOI: 10.1016/j.parint.2018.10.011  0.72
2018 Irwin NAT, Tikhonenkov DV, Hehenberger E, Mylnikov AP, Burki F, Keeling PJ. Phylogenomics supports the monophyly of the Cercozoa. Molecular Phylogenetics and Evolution. PMID 30318266 DOI: 10.1016/j.ympev.2018.09.004  1
2018 Del Campo J, Kolisko M, Boscaro V, Santoferrara LF, Nenarokov S, Massana R, Guillou L, Simpson A, Berney C, de Vargas C, Brown MW, Keeling PJ, Wegener Parfrey L. EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution. Plos Biology. 16: e2005849. PMID 30222734 DOI: 10.1371/journal.pbio.2005849  1
2018 Vacek V, Novák LVF, Treitli SC, Táborský P, Cepicka I, Kolísko M, Keeling PJ, Hampl V. Fe-S Cluster Assembly in Oxymonads and Related Protists. Molecular Biology and Evolution. PMID 30184127 DOI: 10.1093/molbev/msy168  1
2018 Boscaro V, Syberg-Olsen MJ, Irwin NAT, Del Campo J, Keeling PJ. What Can Environmental Sequences Tell Us About the Distribution of Low-Rank Taxa? The Case of Euplotes (Ciliophora, Spirotrichea), Including a Description of Euplotes enigma sp. nov. The Journal of Eukaryotic Microbiology. PMID 30028565 DOI: 10.1111/jeu.12669  0.44
2018 Boscaro V, Santoferrara LF, Zhang Q, Gentekaki E, Syberg-Olsen MJ, Del Campo J, Keeling PJ. EukRef-Ciliophora: A manually curated, phylogeny-based database of small subunit rRNA gene sequences of ciliates. Environmental Microbiology. PMID 29727060 DOI: 10.1111/1462-2920.14264  0.44
2018 Mathur V, Del Campo J, Kolisko M, Keeling PJ. Global Diversity and Distribution of Close Relatives of Apicomplexan Parasites. Environmental Microbiology. PMID 29687563 DOI: 10.1111/1462-2920.14134  1
2018 Bass D, Tikhonenkov DV, Foster R, Dyal P, Janouskovec J, Keeling PJ, Gardner M, Neuhauser S, Hartikainen H, Mylnikov AP, Berney C. Rhizarian 'Novel Clade 10' Revealed as Abundant and Diverse Planktonic and Terrestrial Flagellates, including Aquavolon n. gen. The Journal of Eukaryotic Microbiology. PMID 29658156 DOI: 10.1111/jeu.12524  1
2018 Záhonová K, Petrželková R, Valach M, Yazaki E, Tikhonenkov DV, Butenko A, Janouškovec J, Hrdá Š, Klimeš V, Burger G, Inagaki Y, Keeling PJ, Hampl V, Flegontov P, Yurchenko V, et al. Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase. Scientific Reports. 8: 5239. PMID 29588502 DOI: 10.1038/s41598-018-23575-0  1
2018 Boscaro V, Kolisko M, Felletti M, Vannini C, Lynn DH, Keeling PJ. Publisher Correction: Parallel genome reduction in symbionts descended from closely related free-living bacteria. Nature Ecology & Evolution. PMID 29487366 DOI: 10.1038/s41559-018-0484-8  1
2018 Heger TJ, Giesbrecht IJW, Gustavsen J, Del Campo J, Kellogg CTE, Hoffman KM, Lertzman K, Mohn WW, Keeling PJ. High-throughput environmental sequencing reveals high diversity of litter and moss associated protist communities along a gradient of drainage and tree productivity. Environmental Microbiology. PMID 29417706 DOI: 10.1111/1462-2920.14061  0.44
2018 Kaur B, Valach M, Peña-Diaz P, Moreira S, Keeling PJ, Burger G, Lukeš J, Faktorová D. Transformation of Diplonema papillatum, the type species of the highly diverse and abundant marine micro-eukaryotes Diplonemida (Euglenozoa). Environmental Microbiology. PMID 29318727 DOI: 10.1111/1462-2920.14041  0.6
2017 Boscaro V, Fokin SI, Petroni G, Verni F, Keeling PJ, Vannini C. Symbiont replacement between bacteria of different classes reveals additional layers of complexity in the evolution of symbiosis in the ciliate Euplotes. Protist. 169: 43-52. PMID 29414319 DOI: 10.1016/j.protis.2017.12.003  0.36
2017 Orsi WD, Wilken S, Del Campo J, Heger T, James E, Richards TA, Keeling PJ, Worden AZ, Santoro AE. Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing. Environmental Microbiology. PMID 29215213 DOI: 10.1111/1462-2920.14018  1
2017 Del Campo J, James ER, Hirakawa Y, Fiorito R, Kolisko M, Irwin NAT, Mathur V, Boscaro V, Hehenberger E, Karnkowska A, Scheffrahn RH, Keeling PJ. Pseudotrichonympha leei, Pseudotrichonympha lifesoni, and Pseudotrichonympha pearti, new species of parabasalian flagellates and the description of a rotating subcellular structure. Scientific Reports. 7: 16349. PMID 29180788 DOI: 10.1038/s41598-017-16259-8  1
2017 Janouškovec J, Tikhonenkov DV, Burki F, Howe AT, Rohwer FL, Mylnikov AP, Keeling PJ. A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction. Current Biology : Cb. 27: 3717-3724.e5. PMID 29174886 DOI: 10.1016/j.cub.2017.10.051  1
2017 Boscaro V, Kolisko M, Felletti M, Vannini C, Lynn DH, Keeling PJ. Parallel genome reduction in symbionts descended from closely related free-living bacteria. Nature Ecology & Evolution. 1: 1160-1167. PMID 29046583 DOI: 10.1038/s41559-017-0237-0  1
2017 Strassert JFH, Karnkowska A, Hehenberger E, Del Campo J, Kolisko M, Okamoto N, Burki F, Janouškovec J, Poirier C, Leonard G, Hallam SJ, Richards TA, Worden AZ, Santoro AE, Keeling PJ. Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates. The Isme Journal. PMID 28994824 DOI: 10.1038/ismej.2017.167  1
2017 Boscaro V, James ER, Fiorito R, Hehenberger E, Karnkowska A, Del Campo J, Kolisko M, Irwin NAT, Mathur V, Scheffrahn RH, Keeling PJ. Molecular characterization and phylogeny of four new species of the genus Trichonympha (Parabasalia, Trichonymphea) from lower termite hindguts. International Journal of Systematic and Evolutionary Microbiology. PMID 28840814 DOI: 10.1099/ijsem.0.002169  1
2017 Gile GH, James ER, Tai V, Harper JT, Merrell TL, Boscaro V, Husník F, Scheffrahn RH, Keeling PJ. New Species of Spirotrichonympha from Reticulitermes and the Relationships Among Genera in Spirotrichonymphea (Parabasalia). The Journal of Eukaryotic Microbiology. PMID 28710832 DOI: 10.1111/jeu.12447  1
2017 Hehenberger E, Tikhonenkov DV, Kolisko M, Del Campo J, Esaulov AS, Mylnikov AP, Keeling PJ. Novel Predators Reshape Holozoan Phylogeny and Reveal the Presence of a Two-Component Signaling System in the Ancestor of Animals. Current Biology : Cb. PMID 28648822 DOI: 10.1016/j.cub.2017.06.006  1
2017 Keeling PJ, McCutcheon JP. Endosymbiosis: the feeling is not mutual. Journal of Theoretical Biology. PMID 28624393 DOI: 10.1016/j.jtbi.2017.06.008  1
2017 Gavelis GS, Keeling PJ, Leander BS. How exaptations facilitated photosensory evolution: Seeing the light by accident. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28570771 DOI: 10.1002/bies.201600266  1
2017 Hehenberger E, James ER, Del Campo J, Buckland-Nicks JA, Reimchen TE, Keeling PJ. Fish Parasite Dinoflagellates Haidadinium ichthyophilum and Piscinoodinium Share a Recent Common Ancestor. The Journal of Eukaryotic Microbiology. PMID 28544317 DOI: 10.1111/jeu.12430  0.52
2017 Freeman MA, Fuss J, Kristmundsson Á, Bjorbækmo MFM, Mangot JF, Del Campo J, Keeling PJ, Shalchian-Tabrizi K, Bass D. X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates. Current Biology : Cb. PMID 28528902 DOI: 10.1016/j.cub.2017.04.045  0.44
2017 Gavelis GS, Wakeman KC, Tillmann U, Ripken C, Mitarai S, Herranz M, Özbek S, Holstein T, Keeling PJ, Leander BS. Microbial arms race: Ballistic "nematocysts" in dinoflagellates represent a new extreme in organelle complexity. Science Advances. 3: e1602552. PMID 28435864 DOI: 10.1126/sciadv.1602552  1
2016 Gawryluk RM, Del Campo J, Okamoto N, Strassert JF, Lukeš J, Richards TA, Worden AZ, Santoro AE, Keeling PJ. Morphological Identification and Single-Cell Genomics of Marine Diplonemids. Current Biology : Cb. 26: 3053-3059. PMID 27875688 DOI: 10.1016/j.cub.2016.09.013  1
2016 Syberg-Olsen MJ, Irwin NA, Vannini C, Erra F, Di Giuseppe G, Boscaro V, Keeling PJ. Biogeography and Character Evolution of the Ciliate Genus Euplotes (Spirotrichea, Euplotia), with Description of Euplotes curdsi sp. nov. Plos One. 11: e0165442. PMID 27828996 DOI: 10.1371/journal.pone.0165442  0.36
2016 Novák L, Zubáčová Z, Karnkowska A, Kolisko M, Hroudová M, Stairs CW, Simpson AG, Keeling PJ, Roger AJ, Čepička I, Hampl V. Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes. Bmc Evolutionary Biology. 16: 197. PMID 27716026 DOI: 10.1186/s12862-016-0771-4  1
2016 Del Campo J, Pombert JF, Šlapeta J, Larkum A, Keeling PJ. The 'other' coral symbiont: Ostreobium diversity and distribution. The Isme Journal. PMID 27420029 DOI: 10.1038/ismej.2016.101  1
2016 Stentiford GD, Becnel JJ, Weiss LM, Keeling PJ, Didier ES, Williams BA, Bjornson S, Kent ML, Freeman MA, Brown MJ, Troemel ER, Roesel K, Sokolova Y, Snowden KF, Solter LF. Microsporidia-Emergent Pathogens in the Global Food Chain (Trends in Parasitology 32, 336-348; April 2, 2016). Trends in Parasitology. PMID 27365191 DOI: 10.1016/j.pt.2016.06.002  1
2016 Smith DR, Keeling PJ. Protists and the Wild, Wild West of Gene Expression: New Frontiers, Lawlessness, and Misfits. Annual Review of Microbiology. PMID 27359218 DOI: 10.1146/annurev-micro-102215-095448  1
2016 Pan J, Del Campo J, Keeling PJ. Reference Tree and Environmental Sequence Diversity of Labyrinthulomycetes. The Journal of Eukaryotic Microbiology. PMID 27329779 DOI: 10.1111/jeu.12342  0.44
2016 Hehenberger E, Burki F, Kolisko M, Keeling PJ. Functional relationship between a dinoflagellate host and its diatom endosymbiont. Molecular Biology and Evolution. PMID 27297471 DOI: 10.1093/molbev/msw109  1
2016 Tai V, Carpenter KJ, Weber PK, Nalepa CA, Perlman SJ, Keeling PJ. Genome evolution and nitrogen-fixation in bacterial ectosymbionts of a protist inhabiting wood-feeding cockroaches. Applied and Environmental Microbiology. PMID 27235430 DOI: 10.1128/AEM.00611-16  1
2016 Orsi WD, Smith JM, Liu S, Liu Z, Sakamoto CM, Wilken S, Poirier C, Richards TA, Keeling PJ, Worden AZ, Santoro AE. Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean. The Isme Journal. PMID 26953597 DOI: 10.1038/ismej.2016.20  1
2016 Janouskovec J, Keeling PJ. Evolution: Causality and the Origin of Parasitism. Current Biology : Cb. 26: R174-7. PMID 26906491 DOI: 10.1016/j.cub.2015.12.057  1
2016 Strassert JF, Tikhonenkov DV, Pombert JF, Kolisko M, Tai V, Mylnikov AP, Keeling PJ. Moramonas marocensis gen. nov., sp. nov.: a jakobid flagellate isolated from desert soil with a bacteria-like, but bloated mitochondrial genome. Open Biology. 6. PMID 26887409 DOI: 10.1098/rsob.150239  1
2016 Burki F, Kaplan M, Tikhonenkov DV, Zlatogursky V, Minh BQ, Radaykina LV, Smirnov A, Mylnikov AP, Keeling PJ. Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista. Proceedings. Biological Sciences / the Royal Society. 283. PMID 26817772 DOI: 10.1098/rspb.2015.2802  1
2016 Stentiford GD, Becnel JJ, Weiss LM, Keeling PJ, Didier ES, Williams BA, Bjornson S, Kent ML, Freeman MA, Brown MJ, Troemel ER, Roesel K, Sokolova Y, Snowden KF, Solter L. Microsporidia - Emergent Pathogens in the Global Food Chain. Trends in Parasitology. PMID 26796229 DOI: 10.1016/j.pt.2015.12.004  1
2015 Tikhonenkov DV, Janouškovec J, Keeling PJ, Mylnikov AP. The Morphology, Ultrastructure and SSU rRNA Gene Sequence of a New Freshwater Flagellate, Neobodo borokensis n. sp. (Kinetoplastea, Excavata). The Journal of Eukaryotic Microbiology. PMID 26399688 DOI: 10.1111/jeu.12271  1
2015 Keeling PJ, McCutcheon JP, Doolittle WF. Symbiosis becoming permanent: Survival of the luckiest. Proceedings of the National Academy of Sciences of the United States of America. 112: 10101-3. PMID 26283342 DOI: 10.1073/pnas.1513346112  1
2015 Gavelis GS, White RA, Suttle CA, Keeling PJ, Leander BS. Single-cell transcriptomics using spliced leader PCR: Evidence for multiple losses of photosynthesis in polykrikoid dinoflagellates. Bmc Genomics. 16: 528. PMID 26183220 DOI: 10.1186/s12864-015-1636-8  1
2015 Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, Michálek J, Saxena A, Shanmugam D, Tayyrov A, Veluchamy A, Ali S, Bernal A, del Campo J, Cihlář J, Flegontov P, ... ... Keeling PJ, et al. Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites. Elife. 4: e06974. PMID 26175406 DOI: 10.7554/eLife.06974  1
2015 Gavelis GS, Hayakawa S, White RA, Gojobori T, Suttle CA, Keeling PJ, Leander BS. Eye-like ocelloids are built from different endosymbiotically acquired components. Nature. 523: 204-7. PMID 26131935 DOI: 10.1038/nature14593  1
2015 Smith DR, Keeling PJ. Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes. Proceedings of the National Academy of Sciences of the United States of America. PMID 25814499 DOI: 10.1073/pnas.1422049112  1
2015 Janouškovec J, Tikhonenkov DV, Burki F, Howe AT, Kolísko M, Mylnikov AP, Keeling PJ. Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives. Proceedings of the National Academy of Sciences of the United States of America. 112: 10200-7. PMID 25717057 DOI: 10.1073/pnas.1423790112  1
2015 Worden AZ, Follows MJ, Giovannoni SJ, Wilken S, Zimmerman AE, Keeling PJ. Environmental science. Rethinking the marine carbon cycle: factoring in the multifarious lifestyles of microbes. Science (New York, N.Y.). 347: 1257594. PMID 25678667 DOI: 10.1126/science.1257594  1
2015 Flegontov P, Michálek J, Janouškovec J, Lai DH, Jirk? M, Hajdušková E, Tom?ala A, Otto TD, Keeling PJ, Pain A, Oborník M, Lukeš J. Divergent mitochondrial respiratory chains in phototrophic relatives of apicomplexan parasites. Molecular Biology and Evolution. 32: 1115-31. PMID 25660376 DOI: 10.1093/molbev/msv021  1
2015 Gile GH, James ER, Okamoto N, Carpenter KJ, Scheffrahn RH, Keeling PJ. Molecular Evidence for the Polyphyly of Macrotrichomonas (Parabasalia: Cristamonadea) and a Proposal for Macrotrichomonoides n. gen. The Journal of Eukaryotic Microbiology. PMID 25600410 DOI: 10.1111/jeu.12204  1
2015 Pombert JF, Haag KL, Beidas S, Ebert D, Keeling PJ. The Ordospora colligata genome: Evolution of extreme reduction in microsporidia and host-to-parasite horizontal gene transfer. Mbio. 6. PMID 25587016 DOI: 10.1128/mBio.02400-14  1
2015 Tai V, James ER, Nalepa CA, Scheffrahn RH, Perlman SJ, Keeling PJ. The role of host phylogeny varies in shaping microbial diversity in the hindguts of lower termites. Applied and Environmental Microbiology. 81: 1059-70. PMID 25452280 DOI: 10.1128/AEM.02945-14  1
2015 Tai V, Gile GH, Pan J, James ER, Carpenter KJ, Scheffrahn RH, Keeling PJ. The phylogenetic position of Kofoidia loriculata (Parabasalia) and its implications for the evolution of the Cristamonadea. The Journal of Eukaryotic Microbiology. 62: 255-9. PMID 25155455 DOI: 10.1111/jeu.12163  1
2015 Keeling PJ, Rayner JC. The origins of malaria: there are more things in heaven and earth …. Parasitology. 142: S16-25. PMID 24963725 DOI: 10.1017/S0031182014000766  1
2015 Gavelis GS, White RA, Suttle CA, Keeling PJ, Leander BS. Single-cell transcriptomics using spliced leader PCR: Evidence for multiple losses of photosynthesis in polykrikoid dinoflagellates Bmc Genomics. 16. DOI: 10.1186/s12864-015-1636-8  1
2015 Gavelis GS, Hayakawa S, White RA, Gojobori T, Suttle CA, Keeling PJ, Leander BS. Eye-like ocelloids are built from different endosymbiotically acquired components Nature. 523: 204-207. DOI: 10.1038/nature14593  1
2014 Okamoto N, Keeling PJ. A Comparative Overview of the Flagellar Apparatus of Dinoflagellate, Perkinsids and Colpodellids. Microorganisms. 2: 73-91. PMID 27694777 DOI: 10.3390/microorganisms2010073  0.76
2014 Kolisko M, Boscaro V, Burki F, Lynn DH, Keeling PJ. Single-cell transcriptomics for microbial eukaryotes. Current Biology : Cb. 24: R1081-2. PMID 25458215 DOI: 10.1016/j.cub.2014.10.026  1
2014 Mikhailov KV, Janouškovec J, Tikhonenkov DV, Mirzaeva GS, Diakin AY, Simdyanov TG, Mylnikov AP, Keeling PJ, Aleoshin VV. A complex distribution of elongation family GTPases EF1A and EFL in basal alveolate lineages. Genome Biology and Evolution. 6: 2361-7. PMID 25179686 DOI: 10.1093/gbe/evu186  1
2014 Hehenberger E, Imanian B, Burki F, Keeling PJ. Evidence for the retention of two evolutionary distinct plastids in dinoflagellates with diatom endosymbionts. Genome Biology and Evolution. 6: 2321-34. PMID 25172904 DOI: 10.1093/gbe/evu182  1
2014 McCutcheon JP, Keeling PJ. Endosymbiosis: protein targeting further erodes the organelle/symbiont distinction. Current Biology : Cb. 24: R654-5. PMID 25050964 DOI: 10.1016/j.cub.2014.05.073  1
2014 Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. Plos Biology. 12: e1001889. PMID 24959919 DOI: 10.1371/journal.pbio.1001889  1
2014 Pombert JF, Blouin NA, Lane C, Boucias D, Keeling PJ. A lack of parasitic reduction in the obligate parasitic green alga Helicosporidium. Plos Genetics. 10: e1004355. PMID 24809511 DOI: 10.1371/journal.pgen.1004355  1
2014 Tikhonenkov DV, Janouškovec J, Mylnikov AP, Mikhailov KV, Simdyanov TG, Aleoshin VV, Keeling PJ. Description of Colponema vietnamica sp.n. and Acavomonas peruviana n. gen. n. sp., two new alveolate phyla (Colponemidia nom. nov. and Acavomonidia nom. nov.) and their contributions to reconstructing the ancestral state of alveolates and eukaryotes. Plos One. 9: e95467. PMID 24740116 DOI: 10.1371/journal.pone.0095467  1
2014 Del Campo J, Sieracki ME, Molestina R, Keeling P, Massana R, Ruiz-Trillo I. The others: Our biased perspective of eukaryotic genomes Trends in Ecology and Evolution. 29: 252-259. PMID 24726347 DOI: 10.1016/j.tree.2014.03.006  1
2014 Hirakawa Y, Suzuki S, Archibald JM, Keeling PJ, Ishida K. Overexpression of molecular chaperone genes in nucleomorph genomes. Molecular Biology and Evolution. 31: 1437-43. PMID 24603278 DOI: 10.1093/molbev/msu092  1
2014 Lee R, Lai H, Malik SB, Saldarriaga JF, Keeling PJ, Slamovits CH. Analysis of EST data of the marine protist Oxyrrhis marina, an emerging model for alveolate biology and evolution. Bmc Genomics. 15: 122. PMID 24512041 DOI: 10.1186/1471-2164-15-122  1
2014 Burki F, Keeling PJ. Rhizaria. Current Biology : Cb. 24: R103-7. PMID 24502779 DOI: 10.1016/j.cub.2013.12.025  1
2014 Keeling PJ. The impact of history on our perception of evolutionary events: endosymbiosis and the origin of eukaryotic complexity. Cold Spring Harbor Perspectives in Biology. 6. PMID 24492708 DOI: 10.1101/cshperspect.a016196  1
2014 Imanian B, Keeling PJ. Horizontal gene transfer and redundancy of tryptophan biosynthetic enzymes in dinotoms. Genome Biology and Evolution. 6: 333-43. PMID 24448981 DOI: 10.1093/gbe/evu014  1
2014 Okamoto N, Keeling PJ. The 3D structure of the apical complex and association with the flagellar apparatus revealed by serial TEM tomography in Psammosa pacifica, a distant relative of the Apicomplexa. Plos One. 9: e84653. PMID 24392150 DOI: 10.1371/journal.pone.0084653  1
2014 Burki F, Imanian B, Hehenberger E, Hirakawa Y, Maruyama S, Keeling PJ. Endosymbiotic gene transfer in tertiary plastid-containing dinoflagellates. Eukaryotic Cell. 13: 246-55. PMID 24297445 DOI: 10.1128/EC.00299-13  1
2014 Keeling PJ, Fast NM, Corradi N. Microsporidian Genome Structure and Function Microsporidia: Pathogens of Opportunity: First Edition. 221-229. DOI: 10.1002/9781118395264.ch7  1
2014 Keeling PJ. Phylogenetic Place of Microsporidia in the Tree of Eukaryotes Microsporidia: Pathogens of Opportunity: First Edition. 195-202. DOI: 10.1002/9781118395264.ch5  1
2013 Janouškovec J, Tikhonenkov DV, Mikhailov KV, Simdyanov TG, Aleoshin VV, Mylnikov AP, Keeling PJ. Colponemids represent multiple ancient alveolate lineages. Current Biology : Cb. 23: 2546-52. PMID 24316202 DOI: 10.1016/j.cub.2013.10.062  1
2013 Carpenter KJ, Weber PK, Davisson ML, Pett-Ridge J, Haverty MI, Keeling PJ. Correlated SEM, FIB-SEM, TEM, and NanoSIMS imaging of microbes from the hindgut of a lower termite: methods for in situ functional and ecological studies of uncultivable microbes. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 19: 1490-501. PMID 24119340 DOI: 10.1017/S1431927613013482  1
2013 Janouskovec J, Sobotka R, Lai DH, Flegontov P, Koník P, Komenda J, Ali S, Prásil O, Pain A, Oborník M, Lukes J, Keeling PJ. Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia. Molecular Biology and Evolution. 30: 2447-62. PMID 23974208 DOI: 10.1093/molbev/mst144  1
2013 James ER, Tai V, Scheffrahn RH, Keeling PJ. Trichonympha burlesquei n. sp. from Reticulitermes virginicus and evidence against a cosmopolitan distribution of Trichonympha agilis in many termite hosts. International Journal of Systematic and Evolutionary Microbiology. 63: 3873-6. PMID 23918788 DOI: 10.1099/ijs.0.054874-0  1
2013 Burki F, Corradi N, Sierra R, Pawlowski J, Meyer GR, Abbott CL, Keeling PJ. Phylogenomics of the intracellular parasite Mikrocytos mackini reveals evidence for a mitosome in rhizaria. Current Biology : Cb. 23: 1541-7. PMID 23891116 DOI: 10.1016/j.cub.2013.06.033  1
2013 Tai V, Keeling PJ. Termite hindguts and the ecology of microbial communities in the sequencing age. The Journal of Eukaryotic Microbiology. 60: 421-8. PMID 23710655 DOI: 10.1111/jeu.12048  1
2013 Smith DR, Keeling PJ. Gene conversion shapes linear mitochondrial genome architecture. Genome Biology and Evolution. 5: 905-12. PMID 23572386 DOI: 10.1093/gbe/evt059  1
2013 Janouškovec J, Liu SL, Martone PT, Carré W, Leblanc C, Collén J, Keeling PJ. Evolution of red algal plastid genomes: ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers. Plos One. 8: e59001. PMID 23536846 DOI: 10.1371/journal.pone.0059001  1
2013 Tai V, James ER, Perlman SJ, Keeling PJ. Single-Cell DNA barcoding using sequences from the small subunit rRNA and internal transcribed spacer region identifies new species of Trichonympha and Trichomitopsis from the hindgut of the termite Zootermopsis angusticollis. Plos One. 8: e58728. PMID 23536818 DOI: 10.1371/journal.pone.0058728  1
2013 James ER, Okamoto N, Burki F, Scheffrahn RH, Keeling PJ. Cthulhu Macrofasciculumque n. g., n. sp. and Cthylla Microfasciculumque n. g., n. sp., a newly identified lineage of parabasalian termite symbionts. Plos One. 8: e58509. PMID 23526991 DOI: 10.1371/journal.pone.0058509  1
2013 Pan G, Xu J, Li T, Xia Q, Liu SL, Zhang G, Li S, Li C, Liu H, Yang L, Liu T, Zhang X, Wu Z, Fan W, Dang X, ... ... Keeling PJ, et al. Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation. Bmc Genomics. 14: 186. PMID 23496955 DOI: 10.1186/1471-2164-14-186  1
2013 Keeling PJ. The number, speed, and impact of plastid endosymbioses in eukaryotic evolution. Annual Review of Plant Biology. 64: 583-607. PMID 23451781 DOI: 10.1146/annurev-arplant-050312-120144  1
2013 Gile GH, Carpenter KJ, James ER, Scheffrahn RH, Keeling PJ. Morphology and molecular phylogeny of Staurojoenina mulleri sp. nov. (Trichonymphida, Parabasalia) from the hindgut of the kalotermitid Neotermes jouteli. The Journal of Eukaryotic Microbiology. 60: 203-13. PMID 23398273 DOI: 10.1111/jeu.12024  1
2013 James ER, Burki F, Todd Harper J, Scheffrahn RH, Keeling PJ. Molecular characterization of parabasalian symbionts Coronympha clevelandii and Trichonympha subquasilla from the Hawaiian lowland tree termite Incisitermes immigrans. The Journal of Eukaryotic Microbiology. 60: 313-6. PMID 23384430 DOI: 10.1111/jeu.12027  1
2013 Smith DR, Hamaji T, Olson BJ, Durand PM, Ferris P, Michod RE, Featherston J, Nozaki H, Keeling PJ. Organelle genome complexity scales positively with organism size in volvocine green algae. Molecular Biology and Evolution. 30: 793-7. PMID 23300255 DOI: 10.1093/molbev/mst002  1
2013 Pombert JF, Xu J, Smith DR, Heiman D, Young S, Cuomo CA, Weiss LM, Keeling PJ. Complete genome sequences from three genetically distinct strains reveal high intraspecies genetic diversity in the microsporidian Encephalitozoon cuniculi. Eukaryotic Cell. 12: 503-11. PMID 23291622 DOI: 10.1128/EC.00312-12  1
2013 Janouškovec J, Horák A, Barott KL, Rohwer FL, Keeling PJ. Environmental distribution of coral-associated relatives of apicomplexan parasites. The Isme Journal. 7: 444-7. PMID 23151646 DOI: 10.1038/ismej.2012.129  1
2012 Pombert JF, James ER, Janouškovec J, Keeling PJ. Evidence for transitional stages in the evolution of euglenid group II introns and twintrons in the Monomorphina aenigmatica plastid genome. Plos One. 7: e53433. PMID 23300929 DOI: 10.1371/journal.pone.0053433  1
2012 Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, ... ... Keeling PJ, et al. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature. 492: 59-65. PMID 23201678 DOI: 10.1038/nature11681  0.68
2012 Pawlowski J, Audic S, Adl S, Bass D, Belbahri L, Berney C, Bowser SS, Cepicka I, Decelle J, Dunthorn M, Fiore-Donno AM, Gile GH, Holzmann M, Jahn R, Jirků M, ... Keeling PJ, et al. CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. Plos Biology. 10: e1001419. PMID 23139639 DOI: 10.1371/journal.pbio.1001419  1
2012 Hirakawa Y, Burki F, Keeling PJ. Dual targeting of aminoacyl-tRNA synthetases to the mitochondrion and complex plastid in chlorarachniophytes. Journal of Cell Science. 125: 6176-84. PMID 23038770 DOI: 10.1242/jcs.116533  1
2012 Worden AZ, Janouskovec J, McRose D, Engman A, Welsh RM, Malfatti S, Tringe SG, Keeling PJ. Global distribution of a wild alga revealed by targeted metagenomics. Current Biology : Cb. 22: R675-7. PMID 22974991 DOI: 10.1016/j.cub.2012.07.054  1
2012 Imanian B, Pombert JF, Dorrell RG, Burki F, Keeling PJ. Tertiary endosymbiosis in two dinotoms has generated little change in the mitochondrial genomes of their dinoflagellate hosts and diatom endosymbionts. Plos One. 7: e43763. PMID 22916303 DOI: 10.1371/journal.pone.0043763  1
2012 Stern RF, Andersen RA, Jameson I, Küpper FC, Coffroth MA, Vaulot D, Le Gall F, Véron B, Brand JJ, Skelton H, Kasai F, Lilly EL, Keeling PJ. Evaluating the ribosomal internal transcribed spacer (ITS) as a candidate dinoflagellate barcode marker. Plos One. 7: e42780. PMID 22916158 DOI: 10.1371/journal.pone.0042780  1
2012 Pombert JF, Selman M, Burki F, Bardell FT, Farinelli L, Solter LF, Whitman DW, Weiss LM, Corradi N, Keeling PJ. Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites. Proceedings of the National Academy of Sciences of the United States of America. 109: 12638-43. PMID 22802648 DOI: 10.1073/pnas.1205020109  1
2012 Janouškovec J, Horák A, Barott KL, Rohwer FL, Keeling PJ. Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs. Current Biology : Cb. 22: R518-9. PMID 22789997 DOI: 10.1016/j.cub.2012.04.047  1
2012 Smith DR, Hua J, Lee RW, Keeling PJ. Relative rates of evolution among the three genetic compartments of the red alga Porphyra differ from those of green plants and do not correlate with genome architecture. Molecular Phylogenetics and Evolution. 65: 339-44. PMID 22760027 DOI: 10.1016/j.ympev.2012.06.017  1
2012 Okamoto N, Horák A, Keeling PJ. Description of two species of early branching dinoflagellates, Psammosa pacifica n. g., n. sp. and P. atlantica n. sp. Plos One. 7: e34900. PMID 22719825 DOI: 10.1371/journal.pone.0034900  1
2012 Burki F, Flegontov P, Oborník M, Cihlár J, Pain A, Lukes J, Keeling PJ. Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin. Genome Biology and Evolution. 4: 626-35. PMID 22593553 DOI: 10.1093/gbe/evs049  1
2012 Burki F, Hirakawa Y, Keeling PJ. Intragenomic spread of plastid-targeting presequences in the coccolithophore Emiliania huxleyi. Molecular Biology and Evolution. 29: 2109-12. PMID 22466155 DOI: 10.1093/molbev/mss103  1
2012 Zhao S, Burki F, Bråte J, Keeling PJ, Klaveness D, Shalchian-Tabrizi K. Collodictyon--an ancient lineage in the tree of eukaryotes. Molecular Biology and Evolution. 29: 1557-68. PMID 22319147 DOI: 10.1093/molbev/mss001  1
2012 Burki F, Okamoto N, Pombert JF, Keeling PJ. The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proceedings. Biological Sciences / the Royal Society. 279: 2246-54. PMID 22298847 DOI: 10.1098/rspb.2011.2301  1
2012 Hirakawa Y, Burki F, Keeling PJ. Genome-based reconstruction of the protein import machinery in the secondary plastid of a chlorarachniophyte alga. Eukaryotic Cell. 11: 324-33. PMID 22267775 DOI: 10.1128/EC.05264-11  1
2012 Yuan CL, Keeling PJ, Krause PJ, Horak A, Bent S, Rollend L, Hua XG. Colpodella spp.-like parasite infection in woman, China. Emerging Infectious Diseases. 18: 125-7. PMID 22260904 DOI: 10.3201/eid1801.110716  1
2012 Smith DR, Keeling PJ. Twenty-fold difference in evolutionary rates between the mitochondrial and plastid genomes of species with secondary red plastids. The Journal of Eukaryotic Microbiology. 59: 181-4. PMID 22236077 DOI: 10.1111/j.1550-7408.2011.00601.x  1
2012 Ghosh K, Nieves E, Keeling P, Cali A, Weiss LM. A new vesicular compartment in Encephalitozoon cuniculi. Microbes and Infection / Institut Pasteur. 14: 324-8. PMID 22166342 DOI: 10.1016/j.micinf.2011.11.010  1
2012 Smith DR, Kayal E, Yanagihara AA, Collins AG, Pirro S, Keeling PJ. First complete mitochondrial genome sequence from a box jellyfish reveals a highly fragmented linear architecture and insights into telomere evolution. Genome Biology and Evolution. 4: 52-8. PMID 22117085 DOI: 10.1093/gbe/evr127  1
2011 Koreny L, Sobotka R, Janouskovec J, Keeling PJ, Oborník M. Tetrapyrrole synthesis of photosynthetic chromerids is likely homologous to the unusual pathway of apicomplexan parasites. The Plant Cell. 23: 3454-62. PMID 21963666 DOI: 10.1105/tpc.111.089102  1
2011 Saldarriaga JF, Gile GH, James ER, Horák A, Scheffrahn RH, Keeling PJ. Morphology and molecular phylogeny of Pseudotrichonympha hertwigi and Pseudotrichonympha paulistana (Trichonymphea, parabasalia) from neotropical rhinotermitids. The Journal of Eukaryotic Microbiology. 58: 487-96. PMID 21895839 DOI: 10.1111/j.1550-7408.2011.00575.x  1
2011 Fernández Robledo JA, Caler E, Matsuzaki M, Keeling PJ, Shanmugam D, Roos DS, Vasta GR. The search for the missing link: a relic plastid in Perkinsus? International Journal For Parasitology. 41: 1217-29. PMID 21889509 DOI: 10.1016/j.ijpara.2011.07.008  1
2011 Smith DR, Burki F, Yamada T, Grimwood J, Grigoriev IV, Van Etten JL, Keeling PJ. The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. Plos One. 6: e23624. PMID 21887287 DOI: 10.1371/journal.pone.0023624  1
2011 Hirakawa Y, Howe A, James ER, Keeling PJ. Morphological diversity between culture strains of a chlorarachniophyte, Lotharella globosa. Plos One. 6: e23193. PMID 21858028 DOI: 10.1371/journal.pone.0023193  1
2011 Keeling PJ. Endosymbiosis: bacteria sharing the load. Current Biology : Cb. 21: R623-4. PMID 21855000 DOI: 10.1016/j.cub.2011.06.061  1
2011 Selman M, Pombert JF, Solter L, Farinelli L, Weiss LM, Keeling P, Corradi N. Acquisition of an animal gene by microsporidian intracellular parasites. Current Biology : Cb. 21: R576-7. PMID 21820617 DOI: 10.1016/j.cub.2011.06.017  1
2011 Botté CY, Yamaryo-Botté Y, Janouskovec J, Rupasinghe T, Keeling PJ, Crellin P, Coppel RL, Maréchal E, McConville MJ, McFadden GI. Identification of plant-like galactolipids in Chromera velia, a photosynthetic relative of malaria parasites. The Journal of Biological Chemistry. 286: 29893-903. PMID 21712377 DOI: 10.1074/jbc.M111.254979  1
2011 Carpenter KJ, Horak A, Chow L, Keeling PJ. Symbiosis, morphology, and phylogeny of Hoplonymphidae (Parabasalia) of the wood-feeding roach Cryptocercus punctulatus. The Journal of Eukaryotic Microbiology. 58: 426-36. PMID 21699624 DOI: 10.1111/j.1550-7408.2011.00564.x  1
2011 Lukeš J, Archibald JM, Keeling PJ, Doolittle WF, Gray MW. How a neutral evolutionary ratchet can build cellular complexity. Iubmb Life. 63: 528-37. PMID 21698757 DOI: 10.1002/iub.489  1
2011 Doolittle WF, Lukeš J, Archibald JM, Keeling PJ, Gray MW. Comment on "Does constructive neutral evolution play an important role in the origin of cellular complexity?" DOI 10.1002/bies.201100010. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 33: 427-9. PMID 21538416 DOI: 10.1002/bies.201100039  1
2011 Hirakawa Y, Burki F, Keeling PJ. Nucleus- and nucleomorph-targeted histone proteins in a chlorarachniophyte alga. Molecular Microbiology. 80: 1439-49. PMID 21470316 DOI: 10.1111/j.1365-2958.2011.07643.x  1
2011 Slamovits CH, Okamoto N, Burri L, James ER, Keeling PJ. A bacterial proteorhodopsin proton pump in marine eukaryotes. Nature Communications. 2: 183. PMID 21304512 DOI: 10.1038/ncomms1188  1
2011 Barott KL, Rodriguez-Brito B, JanouÅ¡kovec J, Marhaver KL, Smith JE, Keeling P, Rohwer FL. Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis. Environmental Microbiology. 13: 1192-204. PMID 21272183 DOI: 10.1111/j.1462-2920.2010.02419.x  1
2011 Ghosh K, Nieves E, Keeling P, Pombert JF, Henrich PP, Cali A, Weiss LM. Branching network of proteinaceous filaments within the parasitophorous vacuole of Encephalitozoon cuniculi and Encephalitozoon hellem. Infection and Immunity. 79: 1374-85. PMID 21220485 DOI: 10.1128/IAI.01152-10  1
2011 Keeling PJ, Corradi N. Shrink it or lose it: balancing loss of function with shrinking genomes in the microsporidia. Virulence. 2: 67-70. PMID 21217203 DOI: 10.4161/viru.2.1.14606  1
2011 Gile GH, James ER, Scheffrahn RH, Carpenter KJ, Harper JT, Keeling PJ. Molecular and morphological analysis of the family Calonymphidae with a description of Calonympha chia sp. nov., Snyderella kirbyi sp. nov., Snyderella swezyae sp. nov. and Snyderella yamini sp. nov. International Journal of Systematic and Evolutionary Microbiology. 61: 2547-58. PMID 21112987 DOI: 10.1099/ijs.0.028480-0  1
2011 Oborník M, Vancová M, Lai DH, Janouškovec J, Keeling PJ, Lukeš J. Morphology and ultrastructure of multiple life cycle stages of the photosynthetic relative of apicomplexa, Chromera velia. Protist. 162: 115-30. PMID 20643580 DOI: 10.1016/j.protis.2010.02.004  1
2011 Slamovits CH, Keeling PJ. Contributions of Oxyrrhis marina to molecular biology, genomics and organelle evolution of dinoflagellates Journal of Plankton Research. 33: 591-602. DOI: 10.1093/plankt/fbq153  1
2011 Montagnes DJS, Lowe CD, Roberts EC, Breckels MN, Boakes DE, Davidson K, Keeling PJ, Slamovits CH, Steinke M, Yang Z, Watts PC. An introduction to the special issue: Oxyrrhis marina, a model organism? Journal of Plankton Research. 33: 549-554. DOI: 10.1093/plankt/fbq121  1
2011 Lowe CD, Keeling PJ, Martin LE, Slamovits CH, Watts PC, Montagnes DJS. Who is Oxyrrhis marina? Morphological and phylogenetic studies on an unusual dinoflagellate Journal of Plankton Research. 33: 555-567. DOI: 10.1093/plankt/fbq110  1
2010 Burki F, Kudryavtsev A, Matz MV, Aglyamova GV, Bulman S, Fiers M, Keeling PJ, Pawlowski J. Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists. Bmc Evolutionary Biology. 10: 377. PMID 21126361 DOI: 10.1186/1471-2148-10-377  1
2010 Stern RF, Horak A, Andrew RL, Coffroth MA, Andersen RA, Küpper FC, Jameson I, Hoppenrath M, Véron B, Kasai F, Brand J, James ER, Keeling PJ. Environmental barcoding reveals massive dinoflagellate diversity in marine environments. Plos One. 5: e13991. PMID 21085582 DOI: 10.1371/journal.pone.0013991  1
2010 Gray MW, Lukes J, Archibald JM, Keeling PJ, Doolittle WF. Cell biology. Irremediable complexity? Science (New York, N.Y.). 330: 920-1. PMID 21071654 DOI: 10.1126/science.1198594  1
2010 Cocquyt E, Gile GH, Leliaert F, Verbruggen H, Keeling PJ, De Clerck O. Complex phylogenetic distribution of a non-canonical genetic code in green algae Bmc Evolutionary Biology. 10. PMID 20977766 DOI: 10.1186/1471-2148-10-327  1
2010 Corradi N, Pombert JF, Farinelli L, Didier ES, Keeling PJ. The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis. Nature Communications. 1: 77. PMID 20865802 DOI: 10.1038/ncomms1082  1
2010 Keeling PJ, Corradi N, Morrison HG, Haag KL, Ebert D, Weiss LM, Akiyoshi DE, Tzipori S. The reduced genome of the parasitic microsporidian Enterocytozoon bieneusi lacks genes for core carbon metabolism. Genome Biology and Evolution. 2: 304-9. PMID 20624735 DOI: 10.1093/gbe/evq022  1
2010 Janouskovec J, Horák A, Oborník M, Lukes J, Keeling PJ. A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proceedings of the National Academy of Sciences of the United States of America. 107: 10949-54. PMID 20534454 DOI: 10.1073/pnas.1003335107  1
2010 Imanian B, Pombert JF, Keeling PJ. The complete plastid genomes of the two 'dinotoms' Durinskia baltica and Kryptoperidinium foliaceum. Plos One. 5: e10711. PMID 20502706 DOI: 10.1371/journal.pone.0010711  1
2010 Lee SC, Corradi N, Doan S, Dietrich FS, Keeling PJ, Heitman J. Evolution of the sex-related locus and genomic features shared in microsporidia and fungi. Plos One. 5: e10539. PMID 20479876 DOI: 10.1371/journal.pone.0010539  1
2010 Williams BA, Elliot C, Burri L, Kido Y, Kita K, Moore AL, Keeling PJ. A broad distribution of the alternative oxidase in microsporidian parasites. Plos Pathogens. 6: e1000761. PMID 20169184 DOI: 10.1371/journal.ppat.1000761  1
2010 Gill EE, Lee RC, Corradi N, Grisdale CJ, Limpright VO, Keeling PJ, Fast NM. Splicing and transcription differ between spore and intracellular life stages in the parasitic microsporidia. Molecular Biology and Evolution. 27: 1579-84. PMID 20167610 DOI: 10.1093/molbev/msq050  1
2010 Hirakawa Y, Gile GH, Ota S, Keeling PJ, Ishida K. Characterization of periplastidal compartment-targeting signals in chlorarachniophytes. Molecular Biology and Evolution. 27: 1538-45. PMID 20133351 DOI: 10.1093/molbev/msq038  1
2010 Pombert JF, Keeling PJ. The mitochondrial genome of the entomoparasitic green alga helicosporidium. Plos One. 5: e8954. PMID 20126458 DOI: 10.1371/journal.pone.0008954  1
2010 Keeling PJ. The endosymbiotic origin, diversification and fate of plastids. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 729-48. PMID 20124341 DOI: 10.1098/rstb.2009.0103  1
2010 Carpenter KJ, Horak A, Keeling PJ. Phylogenetic position and morphology of spirotrichosomidae (parabasalia): new evidence from Leptospironympha of Cryptocercus punctulatus. Protist. 161: 122-32. PMID 19664955 DOI: 10.1016/j.protis.2009.06.003  1
2010 Gile GH, Stern RF, James ER, Keeling PJ. DNA barcoding of chlorarachniophytes using nucleomorph its sequences Journal of Phycology. 46: 743-750. DOI: 10.1111/j.1529-8817.2010.00851.x  1
2010 Keeling PJ, Leander BS, Lukeš J. Reply to Speijer: Does complexity necessarily arise from selective advantage? Proceedings of the National Academy of Sciences of the United States of America. 107: E26. DOI: 10.1073/pnas.0911933107  1
2009 Burki F, Inagaki Y, Bråte J, Archibald JM, Keeling PJ, Cavalier-Smith T, Sakaguchi M, Hashimoto T, Horak A, Kumar S, Klaveness D, Jakobsen KS, Pawlowski J, Shalchian-Tabrizi K. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biology and Evolution. 1: 231-8. PMID 20333193 DOI: 10.1093/gbe/evp022  1
2009 Keeling PJ. Functional and ecological impacts of horizontal gene transfer in eukaryotes. Current Opinion in Genetics & Development. 19: 613-9. PMID 19897356 DOI: 10.1016/j.gde.2009.10.001  1
2009 Corradi N, Haag KL, Pombert JF, Ebert D, Keeling PJ. Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions. Genome Biology. 10: R106. PMID 19807911 DOI: 10.1186/gb-2009-10-10-r106  1
2009 Okamoto N, Chantangsi C, Horák A, Leander BS, Keeling PJ. Molecular phylogeny and description of the novel katablepharid Roombia truncata gen. et sp. nov., and establishment of the Hacrobia taxon nov. Plos One. 4: e7080. PMID 19759916 DOI: 10.1371/journal.pone.0007080  1
2009 Keeling PJ. Life in science. Creationists made me do it. Science (New York, N.Y.). 325: 945. PMID 19696333 DOI: 10.1126/science.325_945b  1
2009 Harper JT, Gile GH, James ER, Carpenter KJ, Keeling PJ. The inadequacy of morphology for species and genus delineation in microbial eukaryotes: an example from the parabasalian termite symbiont coronympha. Plos One. 4: e6577. PMID 19668363 DOI: 10.1371/journal.pone.0006577  1
2009 Gile GH, Novis PM, Cragg DS, Zuccarello GC, Keeling PJ. The distribution of Elongation Factor-1 Alpha (EF-1alpha), Elongation Factor-Like (EFL), and a non-canonical genetic code in the ulvophyceae: discrete genetic characters support a consistent phylogenetic framework. The Journal of Eukaryotic Microbiology. 56: 367-72. PMID 19602082 DOI: 10.1111/j.1550-7408.2009.00411.x  1
2009 Elias M, Patron NJ, Keeling PJ. The RAB family GTPase Rab1A from Plasmodium falciparum defines a unique paralog shared by chromalveolates and rhizaria. The Journal of Eukaryotic Microbiology. 56: 348-56. PMID 19602080 DOI: 10.1111/j.1550-7408.2009.00408.x  1
2009 Carpenter KJ, Chow L, Keeling PJ. Morphology, phylogeny, and diversity of Trichonympha (Parabasalia: Hypermastigida) of the wood-feeding cockroach Cryptocercus punctulatus. The Journal of Eukaryotic Microbiology. 56: 305-13. PMID 19602076 DOI: 10.1111/j.1550-7408.2009.00406.x  1
2009 Lukes J, Leander BS, Keeling PJ. Cascades of convergent evolution: the corresponding evolutionary histories of euglenozoans and dinoflagellates. Proceedings of the National Academy of Sciences of the United States of America. 106: 9963-70. PMID 19528647 DOI: 10.1073/pnas.0901004106  1
2009 Slamovits CH, Keeling PJ. Evolution of ultrasmall spliceosomal introns in highly reduced nuclear genomes. Molecular Biology and Evolution. 26: 1699-705. PMID 19380463 DOI: 10.1093/molbev/msp081  1
2009 Gile GH, Faktorová D, Castlejohn CA, Burger G, Lang BF, Farmer MA, Lukes J, Keeling PJ. Distribution and phylogeny of EFL and EF-1alpha in Euglenozoa suggest ancestral co-occurrence followed by differential loss. Plos One. 4: e5162. PMID 19357788 DOI: 10.1371/journal.pone.0005162  1
2009 Keeling PJ. Chromalveolates and the evolution of plastids by secondary endosymbiosis Journal of Eukaryotic Microbiology. 56: 1-8. PMID 19335769 DOI: 10.1111/j.1550-7408.2008.00371.x  1
2009 Keeling PJ. Role of horizontal gene transfer in the evolution of photosynthetic eukaryotes and their plastids Methods in Molecular Biology (Clifton, N.J.). 532: 501-515. PMID 19271204 DOI: 10.1007/978-1-60327-853-9_29  1
2009 Akiyoshi DE, Morrison HG, Lei S, Feng X, Zhang Q, Corradi N, Mayanja H, Tumwine JK, Keeling PJ, Weiss LM, Tzipori S. Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi Plos Pathogens. 5. PMID 19132089 DOI: 10.1371/journal.ppat.1000261  1
2009 Corradi N, Keeling PJ. Microsporidia: a journey through radical taxonomical revisions Fungal Biology Reviews. 23: 1-8. DOI: 10.1016/j.fbr.2009.05.001  1
2009 Keeling PJ. Creationists made me do it Science. 325: 945.  1
2009 Redhead SA, Kirk PM, Keeling PJ, Weiss LM. (048-051) Proposals to exclude the phylum Microsporidia from the Code Taxon. 58: 669.  1
2009 Redhead SA, Kirk PM, Keeling PJ, Weiss LM. Proposals 048-051 to amend the international code of botanical nomenclature Mycotaxon. 108: 505-507.  1
2008 McEwan M, Humayun R, Slamovits CH, Keeling PJ. Nuclear genome sequence survey of the dinoflagellate Heterocapsa triquetra Journal of Eukaryotic Microbiology. 55: 530-535. PMID 19120799 DOI: 10.1111/j.1550-7408.2008.00357.x  1
2008 Lee RC, Williams BA, Brown AM, Adamson ML, Keeling PJ, Fast NM. Alpha- and beta-tubulin phylogenies support a close relationship between the microsporidia Brachiola algerae and Antonospora locustae. The Journal of Eukaryotic Microbiology. 55: 388-92. PMID 19017059 DOI: 10.1111/j.1550-7408.2008.00348.x  1
2008 Lee SC, Corradi N, Byrnes EJ, Torres-Martinez S, Dietrich FS, Keeling PJ, Heitman J. Microsporidia evolved from ancestral sexual fungi. Current Biology : Cb. 18: 1675-9. PMID 18976912 DOI: 10.1016/j.cub.2008.09.030  1
2008 Corradi N, Burri L, Keeling PJ. mRNA processing in Antonospora locustae spores Molecular Genetics and Genomics. 280: 565-574. PMID 18818951 DOI: 10.1007/s00438-008-0387-5  1
2008 Slamovits CH, Keeling PJ. Widespread recycling of processed cDNAs in dinoflagellates Current Biology. 18: R550-R552. PMID 18606121 DOI: 10.1016/j.cub.2008.04.054  1
2008 Gile GH, Keeling PJ. Nucleus-encoded periplastid-targeted EFL in chlorarachniophytes Molecular Biology and Evolution. 25: 1967-1977. PMID 18599495 DOI: 10.1093/molbev/msn147  1
2008 Keeling PJ, Palmer JD. Horizontal gene transfer in eukaryotic evolution. Nature Reviews. Genetics. 9: 605-18. PMID 18591983 DOI: 10.1038/nrg2386  1
2008 Williams BA, Lee RC, Becnel JJ, Weiss LM, Fast NM, Keeling PJ. Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities. Bmc Genomics. 9: 200. PMID 18445287 DOI: 10.1186/1471-2164-9-200  1
2008 Keeling PJ, Archibald JM. Organelle evolution: what's in a name? Current Biology : Cb. 18: R345-7. PMID 18430636 DOI: 10.1016/j.cub.2008.02.065  1
2008 Slamovits CH, Keeling PJ. Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina Molecular Biology and Evolution. 25: 1297-1306. PMID 18385218 DOI: 10.1093/molbev/msn075  1
2008 Williams BA, Cali A, Takvorian PM, Keeling PJ. Distinct localization patterns of two putative mitochondrial proteins in the microsporidian Encephalitozoon cuniculi. The Journal of Eukaryotic Microbiology. 55: 131-3. PMID 18318866 DOI: 10.1111/j.1550-7408.2008.00315.x  1
2008 Keeling PJ. Evolutionary biology: Bridge over troublesome plastids Nature. 451: 896-897. PMID 18288173 DOI: 10.1038/451896a  1
2008 Corradi N, Gangaeva A, Keeling PJ. Comparative profiling of overlapping transcription in the compacted genomes of microsporidia Antonospora locustae and Encephalitozoon cuniculi Genomics. 91: 388-393. PMID 18280697 DOI: 10.1016/j.ygeno.2007.12.006  1
2008 De Koning AP, Noble GP, Heiss AA, Wong J, Keeling PJ. Environmental PCR survey to determine the distribution of a non-canonical genetic code in uncultivable oxymonads Environmental Microbiology. 10: 65-74. PMID 18211267 DOI: 10.1111/j.1462-2920.2007.01430.x  1
2008 Williams BA, Haferkamp I, Keeling PJ. An ADP/ATP-specific mitochondrial carrier protein in the microsporidian Antonospora locustae. Journal of Molecular Biology. 375: 1249-57. PMID 18078956 DOI: 10.1016/j.jmb.2007.11.005  1
2008 Carpenter KJ, Waller RF, Keeling PJ. Surface morphology of Saccinobaculus (Oxymonadida): implications for character evolution and function in oxymonads. Protist. 159: 209-21. PMID 18024180 DOI: 10.1016/j.protis.2007.09.002  1
2007 Corradi N, Akiyoshi DE, Morrison HG, Feng X, Weiss LM, Tzipori S, Keeling PJ. Patterns of genome evolution among the Microsporidian parasites Encephalitozoon cuniculi, Antonospora locustae and enterocytozoon bieneusi Plos One. 2. PMID 18060071 DOI: 10.1371/journal.pone.0001277  1
2007 Keeling PJ. Genomics: Deep questions in the tree of life Science. 317: 1875-1876. PMID 17901321 DOI: 10.1126/science.1149593  1
2007 Jackson CJ, Norman JE, Schnare MN, Gray MW, Keeling PJ, Waller RF. Broad genomic and transcriptional analysis reveals a highly derived genome in dinoflagellate mitochondria. Bmc Biology. 5: 41. PMID 17897476 DOI: 10.1186/1741-7007-5-41  1
2007 Imanian B, Keeling PJ. The dinoflagellates Durinskia baltica and Kryptoperidinium foliaceum retain functionally overlapping mitochondria from two evolutionarily distinct lineages Bmc Evolutionary Biology. 7. PMID 17892581 DOI: 10.1186/1471-2148-7-172  1
2007 Carpenter KJ, Keeling PJ. Morphology and phylogenetic position of Eucomonympha imla (Parabasalia: Hypermastigida). The Journal of Eukaryotic Microbiology. 54: 325-32. PMID 17669157 DOI: 10.1111/j.1550-7408.2007.00263.x  1
2007 Slamovits CH, Saldarriaga JF, Larocque A, Keeling PJ. The Highly Reduced and Fragmented Mitochondrial Genome of the Early-branching Dinoflagellate Oxyrrhis marina Shares Characteristics with both Apicomplexan and Dinoflagellate Mitochondrial Genomes Journal of Molecular Biology. 372: 356-368. PMID 17655860 DOI: 10.1016/j.jmb.2007.06.085  1
2007 Rogers MB, Patron NJ, Keeling PJ. Horizontal transfer of a eukaryotic plastid-targeted protein gene to cyanobacteria. Bmc Biology. 5: 26. PMID 17584924 DOI: 10.1186/1741-7007-5-26  1
2007 Rogers MB, Watkins RF, Harper JT, Durnford DG, Gray MW, Keeling PJ. A complex and punctate distribution of three eukaryotic genes derived by lateral gene transfer. Bmc Evolutionary Biology. 7: 89. PMID 17562012 DOI: 10.1186/1471-2148-7-89  1
2007 Noble GP, Rogers MB, Keeling PJ. Complex distribution of EFL and EF-1alpha proteins in the green algal lineage. Bmc Evolutionary Biology. 7: 82. PMID 17521426 DOI: 10.1186/1471-2148-7-82  1
2007 Patron NJ, Inagaki Y, Keeling PJ. Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages. Current Biology : Cb. 17: 887-91. PMID 17462896 DOI: 10.1016/j.cub.2007.03.069  0.96
2007 Imanian B, Carpenter KJ, Keeling PJ. Mitochondrial genome of a tertiary endosymbiont retains genes for electron transport proteins. The Journal of Eukaryotic Microbiology. 54: 146-53. PMID 17403155 DOI: 10.1111/j.1550-7408.2007.00245.x  1
2007 Keeling PJ. Ostreococcus tauri: seeing through the genes to the genome Trends in Genetics. 23: 151-154. PMID 17331615 DOI: 10.1016/j.tig.2007.02.008  1
2007 Akiyoshi DE, Weiss LM, Feng X, Williams BA, Keeling PJ, Zhang Q, Tzipori S. Analysis of the beta-tubulin genes from Enterocytozoon bieneusi isolates from a human and rhesus macaque. The Journal of Eukaryotic Microbiology. 54: 38-41. PMID 17300517 DOI: 10.1111/j.1550-7408.2006.00140.x  1
2007 Burri L, Keeling PJ. Protein targeting in parasites with cryptic mitochondria International Journal For Parasitology. 37: 265-272. PMID 17250838 DOI: 10.1016/j.ijpara.2006.12.004  1
2007 Rogers MB, Gilson PR, Su V, McFadden GI, Keeling PJ. The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts. Molecular Biology and Evolution. 24: 54-62. PMID 16990439 DOI: 10.1093/molbev/msl129  1
2006 Burri L, Williams BA, Bursac D, Lithgow T, Keeling PJ. Microsporidian mitosomes retain elements of the general mitochondrial targeting system. Proceedings of the National Academy of Sciences of the United States of America. 103: 15916-20. PMID 17043242 DOI: 10.1073/pnas.0604109103  1
2006 Waller RF, Keeling PJ. Alveolate and chlorophycean mitochondrial cox2 genes split twice independently Gene. 383: 33-37. PMID 16987614 DOI: 10.1016/j.gene.2006.07.003  1
2006 Gould SB, Sommer MS, Kroth PG, Gile GH, Keeling PJ, Maier UG. Nucleus-to-nucleus gene transfer and protein retargeting into a remnant cytoplasm of cryptophytes and diatoms Molecular Biology and Evolution. 23: 2413-2422. PMID 16971693 DOI: 10.1093/molbev/msl113  1
2006 Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, ... ... Keeling PJ, et al. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. Plos Biology. 4: e286. PMID 16933976 DOI: 10.1371/journal.pbio.0040286  1
2006 Gile GH, Patron NJ, Keeling PJ. EFL GTPase in Cryptomonads and the Distribution of EFL and EF-1α in Chromalveolates Protist. 157: 435-444. PMID 16904374 DOI: 10.1016/j.protis.2006.06.002  1
2006 Heiss AA, Keeling PJ. The Phylogenetic Position of the Oxymonad Saccinobaculus Based on SSU rRNA Protist. 157: 335-344. PMID 16839812 DOI: 10.1016/j.protis.2006.05.007  1
2006 Patron NJ, Rogers MB, Keeling PJ. Comparative rates of evolution in endosymbiotic nuclear genomes. Bmc Evolutionary Biology. 6: 46. PMID 16772046 DOI: 10.1186/1471-2148-6-46  1
2006 Gilson PR, Su V, Slamovits CH, Reith ME, Keeling PJ, McFadden GI. Complete nucleotide sequence of the chlorarachniophyte nucleomorph: Nature's smallest nucleus Proceedings of the National Academy of Sciences of the United States of America. 103: 9566-9571. PMID 16760254 DOI: 10.1073/pnas.0600707103  1
2006 Waller RF, Patron NJ, Keeling PJ. Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra International Journal of Systematic and Evolutionary Microbiology. 56: 1439-1447. PMID 16738125 DOI: 10.1099/ijs.0.64061-0  1
2006 Waller RF, Slamovits CH, Keeling PJ. Lateral gene transfer of a multigene region from cyanobacteria to dinoflagellates resulting in a novel plastid-targeted fusion protein Molecular Biology and Evolution. 23: 1437-1443. PMID 16675503 DOI: 10.1093/molbev/msl008  1
2006 Slamovits CH, Burri L, Keeling PJ. Characterization of a Divergent Sec61β Gene in Microsporidia Journal of Molecular Biology. 359: 1196-1202. PMID 16650859 DOI: 10.1016/j.jmb.2006.04.028  1
2006 Slamovits CH, Keeling PJ. A high density of ancient spliceosomal introns in oxymonad excavates Bmc Evolutionary Biology. 6. PMID 16638131 DOI: 10.1186/1471-2148-6-34  1
2006 de Koning AP, Keeling PJ. The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured Bmc Biology. 4. PMID 16630350 DOI: 10.1186/1741-7007-4-12  1
2006 Keeling PJ, Brugerolle G. Evidence from SSU rRNA Phylogeny that Octomitus is a Sister Lineage to Giardia Protist. 157: 205-212. PMID 16618550 DOI: 10.1016/j.protis.2006.01.003  1
2006 Patron NJ, Waller RF, Keeling PJ. A tertiary plastid uses genes from two endosymbionts Journal of Molecular Biology. 357: 1373-1382. PMID 16490209 DOI: 10.1016/j.jmb.2006.01.084  1
2006 Slamovits CH, Keeling PJ. Pyruvate-phosphate dikinase of oxymonads and parabasalia and the evolution of pyrophosphate-dependent glycolysis in anaerobic eukaryotes Eukaryotic Cell. 5: 148-154. PMID 16400177 DOI: 10.1128/EC.5.1.148-154.2006  1
2005 Keeling PJ, Burger G, Durnford DG, Lang BF, Lee RW, Pearlman RE, Roger AJ, Gray MW. The tree of eukaryotes. Trends in Ecology & Evolution. 20: 670-6. PMID 16701456 DOI: 10.1016/j.tree.2005.09.005  1
2005 Keeling PJ, Slamovits CH. Causes and effects of nuclear genome reduction Current Opinion in Genetics and Development. 15: 601-608. PMID 16188433 DOI: 10.1016/j.gde.2005.09.003  1
2005 De Koning AP, Tartar A, Boucias DG, Keeling PJ. Expressed sequence tag (EST) survey of the highly adapted green algal parasite, Helicosporidium Protist. 156: 181-190. PMID 16171185 DOI: 10.1016/j.protis.2005.02.005  1
2005 Williams BA, Slamovits CH, Patron NJ, Fast NM, Keeling PJ. A high frequency of overlapping gene expression in compacted eukaryotic genomes. Proceedings of the National Academy of Sciences of the United States of America. 102: 10936-41. PMID 16037215 DOI: 10.1073/pnas.0501321102  1
2005 Takishita K, Patron NJ, Ishida KI, Maruyama T, Keeling PJ. A transcriptional fusion of genes encoding glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and enolase in dinoflagellates Journal of Eukaryotic Microbiology. 52: 343-348. PMID 16014012 DOI: 10.1111/j.1550-7408.2005.00042x  1
2005 Keeling PJ, Fast NM, Law JS, Williams BA, Slamovits CH. Comparative genomics of microsporidia. Folia Parasitologica. 52: 8-14. PMID 16004359  1
2005 Williams BA, Keeling PJ. Microsporidian mitochondrial proteins: expression in Antonospora locustae spores and identification of genes coding for two further proteins. The Journal of Eukaryotic Microbiology. 52: 271-6. PMID 15927004 DOI: 10.1111/j.1550-7408.2005.05-00036.x  1
2005 Patron NJ, Waller RF, Archibald JM, Keeling PJ. Complex protein targeting to dinoflagellate plastids. Journal of Molecular Biology. 348: 1015-24. PMID 15843030 DOI: 10.1016/j.jmb.2005.03.030  1
2005 Liki? VA, Perry A, Hulett J, Derby M, Traven A, Waller RF, Keeling PJ, Koehler CM, Curran SP, Gooley PR, Lithgow T. Patterns that define the four domains conserved in known and novel isoforms of the protein import receptor Tom20 Journal of Molecular Biology. 347: 81-93. PMID 15733919 DOI: 10.1016/j.jmb.2004.12.057  1
2005 Harper JT, Waanders E, Keeling PJ. On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes International Journal of Systematic and Evolutionary Microbiology. 55: 487-496. PMID 15653923 DOI: 10.1099/ijs.0.63216-0  1
2005 Patron NJ, Keeling PJ. Common evolutionary origin of starch biosynthetic enzymes in green and red algae Journal of Phycology. 41: 1131-1141. DOI: 10.1111/j.1529-8817.2005.00135.x  1
2004 McEwan ML, Keeling PJ. HSP90, tubulin and actin are retained in the tertiary endosymbiont genome of Kryptoperidinium foliaceum Journal of Eukaryotic Microbiology. 51: 651-659. PMID 15666722 DOI: 10.1111/j.1550-7408.2004.tb00604.x  1
2004 Keeling PJ, Archibald JM, Fast NM, Palmer JD. Comment on "The evolution of modern eukaryotic phytoplankton". Science (New York, N.Y.). 306: 2191; author reply 2. PMID 15618503 DOI: 10.1126/science.1103879  1
2004 Keeling PJ, Slamovits CH. Simplicity and complexity of microsporidian genomes Eukaryotic Cell. 3: 1363-1369. PMID 15590811 DOI: 10.1128/EC.3.6.1363-1369.2004  1
2004 Rogers MB, Archibald JM, Field MA, Li C, Striepen B, Keeling PJ. Plastid-targeting peptides from the chlorarachniophyte Bigelowiella natans. The Journal of Eukaryotic Microbiology. 51: 529-35. PMID 15537087  1
2004 Keeling PJ, Inagaki Y. A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1α Proceedings of the National Academy of Sciences of the United States of America. 101: 15380-15385. PMID 15492217 DOI: 10.1073/pnas.0404505101  1
2004 Harper JT, Keeling PJ. Lateral gene transfer and the complex distribution of insertions in eukaryotic enolase Gene. 340: 227-235. PMID 15475163 DOI: 10.1016/j.gene.2004.06.048  1
2004 De Koning AP, Keeling PJ. Nucleus-encoded genes for plastid-targeted proteins in Helicosporidium: Functional diversity of a cryptic plastid in a parasitic alga Eukaryotic Cell. 3: 1198-1205. PMID 15470248 DOI: 10.1128/EC.3.5.1198-1205.2004  1
2004 Patron NJ, Rogers MB, Keeling PJ. Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates. Eukaryotic Cell. 3: 1169-75. PMID 15470245 DOI: 10.1128/EC.3.5.1169-1175.2004  1
2004 Slamovits CH, Keeling PJ. Class II photolyase in a microsporidian intracellular parasite Journal of Molecular Biology. 341: 713-721. PMID 15288781 DOI: 10.1016/j.jmb.2004.06.032  1
2004 Leander BS, Keeling PJ. Symbiotic innovation in the oxymonad Streblomastix strix. The Journal of Eukaryotic Microbiology. 51: 291-300. PMID 15218697  1
2004 Slamovits CH, Fast NM, Law JS, Keeling PJ. Genome compaction and stability in microsporidian intracellular parasites. Current Biology : Cb. 14: 891-6. PMID 15186746 DOI: 10.1016/j.cub.2004.04.041  1
2004 Slamovits CH, Williams BA, Keeling PJ. Transfer of Nosema locustae (Microsporidia) to Antonospora locustae n. comb. based on molecular and ultrastructural data. The Journal of Eukaryotic Microbiology. 51: 207-13. PMID 15134257 DOI: 10.1111/j.1550-7408.2004.tb00547.x  1
2004 Keeling PJ. Reduction and compaction in the genome of the apicomplexan parasite Cryptosporidium parvum Developmental Cell. 6: 614-616. PMID 15130487 DOI: 10.1016/S1534-5807(04)00135-2  1
2004 Rogers M, Keeling PJ. Lateral transfer and recompartmentalization of Calvin cycle enzymes of plants and algae. Journal of Molecular Evolution. 58: 367-75. PMID 15114416 DOI: 10.1007/s00239-003-2558-7  1
2004 Archibald JM, Keeling PJ. Actin and ubiquitin protein sequences support a cercozoan/foraminiferan ancestry for the plasmodiophorid plant pathogens. The Journal of Eukaryotic Microbiology. 51: 113-8. PMID 15068273 DOI: 10.1111/j.1550-7408.2004.tb00172.x  1
2004 Gerbod D, Sanders E, Moriya S, Noël C, Takasu H, Fast NM, Delgado-Viscogliosi P, Ohkuma M, Kudo T, Capron M, Palmer JD, Keeling PJ, Viscogliosi E. Molecular phylogenies of Parabasalia inferred from four protein genes and comparison with rRNA trees. Molecular Phylogenetics and Evolution. 31: 572-80. PMID 15062795 DOI: 10.1016/j.ympev.2003.09.013  1
2004 Keeling PJ. Diversity and evolutionary history of plastids and their hosts American Journal of Botany. 91: 1481-1493. DOI: 10.3732/ajb.91.10.1481  1
2004 Saldarriaga JF, Taylor FJR, Cavalier-Smith T, Menden-Deuer S, Keeling PJ. Molecular data and the evolutionary history of dinoflagellates European Journal of Protistology. 40: 85-111. DOI: 10.1016/j.ejop.2003.11.003  1
2003 Leander BS, Harper JT, Keeling PJ. Molecular phylogeny and surface morphology of marine aseptate gregarines (Apicomplexa): Selenidium spp. and Lecudina spp. The Journal of Parasitology. 89: 1191-205. PMID 14740910 DOI: 10.1645/GE-3155  1
2003 Williams BA, Keeling PJ. Cryptic organelles in parasitic protists and fungi. Advances in Parasitology. 54: 9-68. PMID 14711083  0.84
2003 Longet D, Archibald JM, Keeling PJ, Pawlowski J. Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies. International Journal of Systematic and Evolutionary Microbiology. 53: 1735-9. PMID 14657101 DOI: 10.1099/ijs.0.02597-0  1
2003 Leander BS, Kuvardina ON, Aleshin VV, Mylnikov AP, Keeling PJ. Molecular phylogeny and surface morphology of Colpodella edax (Alveolata): insights into the phagotrophic ancestry of apicomplexans. The Journal of Eukaryotic Microbiology. 50: 334-40. PMID 14563171  1
2003 Fast NM, Law JS, Williams BA, Keeling PJ. Bacterial catalase in the microsporidian Nosema locustae: implications for microsporidian metabolism and genome evolution. Eukaryotic Cell. 2: 1069-75. PMID 14555490 DOI: 10.1128/EC.2.5.1069-1075.2003  1
2003 Ryall K, Harper JT, Keeling PJ. Plastid-derived Type II fatty acid biosynthetic enzymes in chromists. Gene. 313: 139-48. PMID 12957385  0.56
2003 Harper JT, Keeling PJ. Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Molecular Biology and Evolution. 20: 1730-5. PMID 12885964 DOI: 10.1093/molbev/msg195  0.56
2003 Waller RF, Keeling PJ, van Dooren GG, McFadden GI. Comment on "A green algal apicoplast ancestor". Science (New York, N.Y.). 301: 49; author reply 49. PMID 12843377 DOI: 10.1126/science.1083647  0.96
2003 Archibald JM, Rogers MB, Toop M, Ishida K, Keeling PJ. Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proceedings of the National Academy of Sciences of the United States of America. 100: 7678-83. PMID 12777624 DOI: 10.1073/pnas.1230951100  1
2003 Archibald JM, Teh EM, Keeling PJ. Novel ubiquitin fusion proteins: ribosomal protein P1 and actin. Journal of Molecular Biology. 328: 771-8. PMID 12729753 DOI: 10.1016/S0022-2836(03)00374-7  1
2003 Saldarriaga JF, McEwan ML, Fast NM, Taylor FJ, Keeling PJ. Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage. International Journal of Systematic and Evolutionary Microbiology. 53: 355-65. PMID 12656195 DOI: 10.1099/ijs.0.02328-0  0.8
2003 Leander BS, Clopton RE, Keeling PJ. Phylogeny of gregarines (Apicomplexa) as inferred from small-subunit rDNA and beta-tubulin. International Journal of Systematic and Evolutionary Microbiology. 53: 345-54. PMID 12656194 DOI: 10.1099/ijs.0.02284-0  1
2003 Keeling PJ, Leander BS. Characterisation of a non-canonical genetic code in the oxymonad Streblomastix strix. Journal of Molecular Biology. 326: 1337-49. PMID 12595248  1
2003 Archibald JM, Keeling PJ. Comparative genomics. Plant genomes: cyanobacterial genes revealed. Heredity. 90: 2-3. PMID 12522415 DOI: 10.1038/sj.hdy.6800204  1
2003 Archibald JM, Longet D, Pawlowski J, Keeling PJ. A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Molecular Biology and Evolution. 20: 62-6. PMID 12519907 DOI: 10.1093/molbev/msg006  1
2002 Kuvardina ON, Leander BS, Aleshin VV, Myl'nikov AP, Keeling PJ, Simdyanov TG. The phylogeny of colpodellids (Alveolata) using small subunit rRNA gene sequences suggests they are the free-living sister group to apicomplexans. The Journal of Eukaryotic Microbiology. 49: 498-504. PMID 12503687  1
2002 Archibald JM, Keeling PJ. Recycled plastids: a 'green movement' in eukaryotic evolution. Trends in Genetics : Tig. 18: 577-84. PMID 12414188 DOI: 10.1016/S0168-9525(02)02777-4  1
2002 Brinkman FS, Blanchard JL, Cherkasov A, Av-Gay Y, Brunham RC, Fernandez RC, Finlay BB, Otto SP, Ouellette BF, Keeling PJ, Rose AM, Hancock RE, Jones SJ, Greberg H. Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast. Genome Research. 12: 1159-67. PMID 12176923 DOI: 10.1101/gr.341802  1
2002 Keeling PJ, Fast NM. Microsporidia: biology and evolution of highly reduced intracellular parasites. Annual Review of Microbiology. 56: 93-116. PMID 12142484 DOI: 10.1146/annurev.micro.56.012302.160854  0.8
2002 Fast NM, Xue L, Bingham S, Keeling PJ. Re-examining alveolate evolution using multiple protein molecular phylogenies. The Journal of Eukaryotic Microbiology. 49: 30-7. PMID 11908896  1
2001 Keeling PJ, Palmer JD. Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase. Proceedings of the National Academy of Sciences of the United States of America. 98: 10745-50. PMID 11526220 DOI: 10.1073/pnas.191337098  1
2001 Saldarriaga JF, Taylor FJ, Keeling PJ, Cavalier-Smith T. Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements. Journal of Molecular Evolution. 53: 204-13. PMID 11523007 DOI: 10.1007/s002390010210  1
2000 De Koning AP, Brinkman FSL, Jones SJM, Keeling PJ. Lateral gene transfer and metabolic adaptation in the human parasite trichomonas vaginalis Molecular Biology and Evolution. 17: 1769-1773. PMID 11070064  1
2000 Keeling PJ, Palmer JD. Parabasalian flagellates are ancient eukaryotes. Nature. 405: 635-7. PMID 10864312 DOI: 10.1038/35015167  1
2000 Keeling PJ, Luker MA, Palmer JD. Evidence from beta-tubulin phylogeny that microsporidia evolved from within the fungi. Molecular Biology and Evolution. 17: 23-31. PMID 10666703  1
1999 Keeling PJ, Palmer JD, Donald RG, Roos DS, Waller RF, McFadden GI. Shikimate pathway in apicomplexan parasites. Nature. 397: 219-20. PMID 9930696 DOI: 10.1038/16615  1
1998 Keeling PJ, Klenk HP, Singh RK, Schenk ME, Sensen CW, Zillig W, Doolittle WF. Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry. Extremophiles : Life Under Extreme Conditions. 2: 391-3. PMID 9827327  1
1998 Waller RF, Keeling PJ, Donald RG, Striepen B, Handman E, Lang-Unnasch N, Cowman AF, Besra GS, Roos DS, McFadden GI. Nuclear-encoded proteins target to the plastid in Toxoplasma gondii and Plasmodium falciparum. Proceedings of the National Academy of Sciences of the United States of America. 95: 12352-7. PMID 9770490  0.96
1997 Keeling PJ, Doolittle WF. Widespread and ancient distribution of a noncanonical genetic code in diplomonads. Molecular Biology and Evolution. 14: 895-901. PMID 9287422  1
1997 Keeling PJ, Doolittle WF. Evidence that eukaryotic triosephosphate isomerase is of alpha-proteobacterial origin. Proceedings of the National Academy of Sciences of the United States of America. 94: 1270-5. PMID 9037042 DOI: 10.1073/pnas.94.4.1270  1
1996 Keeling PJ, Doherty-Kirby AL, Teh EM, Doolittle WF. Linked genes for calmodulin and E2 ubiquitin-conjugating enzyme in Trichomonas vaginalis. The Journal of Eukaryotic Microbiology. 43: 468-74. PMID 8976604  1
1996 Keeling PJ, Doolittle WF. Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family. Molecular Biology and Evolution. 13: 1297-305. PMID 8952074  1
1996 Keeling PJ, Doolittle WF. Methionine aminopeptidase-1: the MAP of the mitochondrion? Trends in Biochemical Sciences. 21: 285-6. PMID 8772380  1
1996 Keeling PJ, Klenk HP, Singh RK, Feeley O, Schleper C, Zillig W, Doolittle WF, Sensen CW. Complete nucleotide sequence of the Sulfolobus islandicus multicopy plasmid pRN1. Plasmid. 35: 141-4. PMID 8700967 DOI: 10.1006/plas.1996.0016  1
1996 Keeling PJ, Doolittle WF. A non-canonical genetic code in an early diverging eukaryotic lineage. The Embo Journal. 15: 2285-90. PMID 8641293  1
1995 Keeling PJ, Doolittle WF. Archaea: narrowing the gap between prokaryotes and eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 92: 5761-4. PMID 7597025 DOI: 10.1073/pnas.92.13.5761  1
1995 Keeling PJ, Doolittle WF. An archaebacterial elF-1A: new grist for the mill. Molecular Microbiology. 17: 399-400. PMID 7494488 DOI: 10.1111/j.1365-2958.1995.mmi_17020399.x  1
1995 Keeling PJ, Doolittle WF. Concerted evolution in protists: recent homogenization of a polyubiquitin gene in Trichomonas vaginalis. Journal of Molecular Evolution. 41: 556-62. PMID 7490769 DOI: 10.1007/BF00175813  1
1994 Roger AJ, Keeling PJ, Doolittle WF. Introns, the broken transposons. Society of General Physiologists Series. 49: 27-37. PMID 7939900  1
1994 Keeling PJ, Charlebois RL, Doolittle WF. Archaebacterial genomes: eubacterial form and eukaryotic content. Current Opinion in Genetics & Development. 4: 816-22. PMID 7888750  1
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