Charles F. Delwiche - Publications

Affiliations: 
1993-1996 Indiana University, Bloomington, Bloomington, IN, United States 

74 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Janouškovec J, Gavelis GS, Burki F, Dinh D, Bachvaroff TR, Gornik SG, Bright KJ, Imanian B, Strom SL, Delwiche CF, Waller RF, Fensome RA, Leander BS, Rohwer FL, Saldarriaga JF. Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics. Proceedings of the National Academy of Sciences of the United States of America. PMID 28028238 DOI: 10.1073/pnas.1614842114  0.4
2016 Van de Poel B, Cooper ED, Van Der Straeten D, Chang C, Delwiche CF. Transcriptome profiling of the green alga Spirogyra pratensis (Charophyta) suggests an ancestral... Plant Physiology. PMID 27489312 DOI: 10.1104/pp.16.00299  0.96
2016 Delwiche CF. The Genomes of Charophyte Green Algae Advances in Botanical Research. DOI: 10.1016/bs.abr.2016.02.002  0.96
2015 Delwiche CF, Cooper ED. The Evolutionary Origin of a Terrestrial Flora. Current Biology : Cb. 25: R899-910. PMID 26439353 DOI: 10.1016/j.cub.2015.08.029  0.96
2015 Bentlage B, Rogers TS, Bachvaroff TR, Delwiche CF. Complex Ancestries of Isoprenoid Synthesis in Dinoflagellates. The Journal of Eukaryotic Microbiology. PMID 26291956 DOI: 10.1111/jeu.12261  0.96
2015 Gibbons TR, Mount SM, Cooper ED, Delwiche CF. Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm. Bmc Bioinformatics. 16: 218. PMID 26160651 DOI: 10.1186/s12859-015-0625-x  0.96
2015 Mendez GS, Delwiche CF, Apt KE, Lippmeier JC. Dinoflagellate Gene Structure and Intron Splice Sites in a Genomic Tandem Array. The Journal of Eukaryotic Microbiology. 62: 679-87. PMID 25963315 DOI: 10.1111/jeu.12230  0.96
2015 Miller JJ, Delwiche CF. Phylogenomic analysis of Emiliania huxleyi provides evidence for haptophyte-stramenopile association and a chimeric haptophyte nuclear genome. Marine Genomics. 21: 31-42. PMID 25746767 DOI: 10.1016/j.margen.2015.02.008  0.96
2015 Alexandrou MA, Cardinale BJ, Hall JD, Delwiche CF, Fritschie K, Narwani A, Venail PA, Bentlage B, Pankey MS, Oakley TH. Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae. Proceedings. Biological Sciences / the Royal Society. 282: 20141745. PMID 25473009 DOI: 10.1098/rspb.2014.1745  0.96
2015 Ju C, Van De Poel B, Cooper ED, Thierer JH, Gibbons TR, Delwiche CF, Chang C. Conservation of ethylene as a plant hormone over 450 million years of evolution Nature Plants. 1. DOI: 10.1038/nplants.2014.4  0.96
2014 Cooper ED, Bentlage B, Gibbons TR, Bachvaroff TR, Delwiche CF. Metatranscriptome profiling of a harmful algal bloom. Harmful Algae. 37: 75-83. PMID 25484636 DOI: 10.1016/j.hal.2014.04.016  0.96
2014 Viaene T, Landberg K, Thelander M, Medvecka E, Pederson E, Feraru E, Cooper ED, Karimi M, Delwiche CF, Ljung K, Geisler M, Sundberg E, Friml J. Directional auxin transport mechanisms in early diverging land plants. Current Biology : Cb. 24: 2786-91. PMID 25448004 DOI: 10.1016/j.cub.2014.09.056  0.96
2014 Demko V, Perroud PF, Johansen W, Delwiche CF, Cooper ED, Remme P, Ako AE, Kugler KG, Mayer KF, Quatrano R, Olsen OA. Genetic analysis of DEFECTIVE KERNEL1 loop function in three-dimensional body patterning in Physcomitrella patens. Plant Physiology. 166: 903-19. PMID 25185121 DOI: 10.1104/pp.114.243758  0.96
2014 Bachvaroff TR, Gornik SG, Concepcion GT, Waller RF, Mendez GS, Lippmeier JC, Delwiche CF. Dinoflagellate phylogeny revisited: using ribosomal proteins to resolve deep branching dinoflagellate clades. Molecular Phylogenetics and Evolution. 70: 314-22. PMID 24135237 DOI: 10.1016/j.ympev.2013.10.007  0.96
2013 Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, ... ... Delwiche CF, et al. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature. 499: 209-13. PMID 23760476 DOI: 10.1038/nature12221  0.96
2013 Viaene T, Delwiche CF, Rensing SA, Friml J. Origin and evolution of PIN auxin transporters in the green lineage. Trends in Plant Science. 18: 5-10. PMID 22981345 DOI: 10.1016/j.tplants.2012.08.009  0.96
2012 Finet C, Timme RE, Delwiche CF, Marletaz F. Erratum: Multigene phylogeny of the green lineage reveals the origin and diversification of land plants. Current Biology : Cb. 22: 1456-7. PMID 23050273 DOI: 10.1016/j.cub.2012.07.021  0.96
2012 Delaux PM, Xie X, Timme RE, Puech-Pages V, Dunand C, Lecompte E, Delwiche CF, Yoneyama K, Bécard G, Séjalon-Delmas N. Origin of strigolactones in the green lineage. The New Phytologist. 195: 857-71. PMID 22738134 DOI: 10.1111/j.1469-8137.2012.04209.x  0.96
2012 Chanroj S, Wang G, Venema K, Zhang MW, Delwiche CF, Sze H. Conserved and diversified gene families of monovalent cation/h(+) antiporters from algae to flowering plants. Frontiers in Plant Science. 3: 25. PMID 22639643 DOI: 10.3389/fpls.2012.00025  0.96
2012 Timme RE, Bachvaroff TR, Delwiche CF. Broad phylogenomic sampling and the sister lineage of land plants. Plos One. 7: e29696. PMID 22253761 DOI: 10.1371/journal.pone.0029696  0.96
2012 Coats DW, Bachvaroff TR, Delwiche CF. Revision of the family Duboscquellidae with description of Euduboscquella crenulata n. gen., n. sp. (Dinoflagellata, Syndinea), an intracellular parasite of the ciliate Favella panamensis Kofoid & Campbell. The Journal of Eukaryotic Microbiology. 59: 1-11. PMID 22221918 DOI: 10.1111/j.1550-7408.2011.00588.x  0.96
2012 Miller JJ, Delwiche CF, Coats DW. Ultrastructure of Amoebophrya sp. and its changes during the course of infection. Protist. 163: 720-45. PMID 22209083 DOI: 10.1016/j.protis.2011.11.007  0.96
2012 Bachvaroff TR, Kim S, Guillou L, Delwiche CF, Coats DW. Molecular diversity of the syndinean genus Euduboscquella based on single-cell PCR analysis. Applied and Environmental Microbiology. 78: 334-45. PMID 22081578 DOI: 10.1128/AEM.06678-11  0.96
2012 Leliaert F, Smith DR, Moreau H, Herron MD, Verbruggen H, Delwiche CF, De Clerck O. Phylogeny and Molecular Evolution of the Green Algae Critical Reviews in Plant Sciences. 31: 1-46. DOI: 10.1080/07352689.2011.615705  0.96
2011 Delwiche CF, Timme RE. Plants. Current Biology : Cb. 21: R417-22. PMID 21640897 DOI: 10.1016/j.cub.2011.04.021  0.96
2011 Bachvaroff TR, Handy SM, Place AR, Delwiche CF. Alveolate phylogeny inferred using concatenated ribosomal proteins. The Journal of Eukaryotic Microbiology. 58: 223-33. PMID 21518081 DOI: 10.1111/j.1550-7408.2011.00555.x  0.96
2011 Hoffman GE, Sanchez Puerta MV, Delwiche CF. Evolution of light-harvesting complex proteins from Chl c-containing algae. Bmc Evolutionary Biology. 11: 101. PMID 21496217 DOI: 10.1186/1471-2148-11-101  0.96
2011 Kim S, Bachvaroff TR, Handy SM, Delwiche CF. Dynamics of actin evolution in dinoflagellates. Molecular Biology and Evolution. 28: 1469-80. PMID 21149641 DOI: 10.1093/molbev/msq332  0.96
2010 Finet C, Timme RE, Delwiche CF, Marlétaz F. Multigene phylogeny of the green lineage reveals the origin and diversification of land plants. Current Biology : Cb. 20: 2217-22. PMID 21145743 DOI: 10.1016/j.cub.2010.11.035  0.96
2010 Coats DW, Kim S, Bachvaroff TR, Handy SM, Delwiche CF. Tintinnophagus acutus n. g., n. sp. (Phylum Dinoflagellata), an ectoparasite of the ciliate Tintinnopsis cylindrica Daday 1887, and its relationship to Duboscquodinium collini Grassé 1952. The Journal of Eukaryotic Microbiology. 57: 468-82. PMID 20880034 DOI: 10.1111/j.1550-7408.2010.00504.x  0.96
2010 Timme RE, Delwiche CF. Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes. Bmc Plant Biology. 10: 96. PMID 20500869 DOI: 10.1186/1471-2229-10-96  0.96
2010 Robinson GE, Banks JA, Padilla DK, Burggren WW, Cohen CS, Delwiche CF, Funk V, Hoekstra HE, Jarvis ED, Johnson L, Martindale MQ, Rio CMD, Medina M, Salt DE, Sinha S, et al. Empowering 21st century biology Bioscience. 60: 923-930. DOI: 10.1525/bio.2010.60.11.8  0.96
2009 Handy SM, Bachvaroff TR, Timme RE, Wayne Coats D, Kim S, Delwiche CF. PHYLOGENY OF FOUR DINOPHYSIACEAN GENERA (DINOPHYCEAE, DINOPHYSIALES) BASED ON rDNA SEQUENCES FROM SINGLE CELLS AND ENVIRONMENTAL SAMPLES(1). Journal of Phycology. 45: 1163-74. PMID 27032361 DOI: 10.1111/j.1529-8817.2009.00738.x  0.84
2009 Hoppenrath M, Bachvaroff TR, Handy SM, Delwiche CF, Leander BS. Molecular phylogeny of ocelloid-bearing dinoflagellates (Warnowiaceae) as inferred from SSU and LSU rDNA sequences. Bmc Evolutionary Biology. 9: 116. PMID 19467154 DOI: 10.1186/1471-2148-9-116  0.96
2009 Handy SM, Bachvaroff TR, Timme RE, Wayne Coats D, Kim S, Delwiche CF. Phylogeny of four dinophysiacean genera (DINOPHYCEAE,DINOPHYSIALES) based on rdna sequences from single cells and environmental samples Journal of Phycology. 45: 1163-1174. DOI: 10.1111/j.1529-8817.2009.00738.x  0.96
2008 Sanchez-Puerta MV, Delwiche CF. A HYPOTHESIS FOR PLASTID EVOLUTION IN CHROMALVEOLATES(1). Journal of Phycology. 44: 1097-107. PMID 27041706 DOI: 10.1111/j.1529-8817.2008.00559.x  0.96
2008 Hall JD, Karol KG, McCourt RM, Delwiche CF. PHYLOGENY OF THE CONJUGATING GREEN ALGAE BASED ON CHLOROPLAST AND MITOCHONDRIAL NUCLEOTIDE SEQUENCE DATA(1). Journal of Phycology. 44: 467-77. PMID 27041201 DOI: 10.1111/j.1529-8817.2008.00485.x  0.96
2008 Hall JD, McCourt RM, Delwiche CF. Patterns of cell division in the filamentous Desmidiaceae, close green algal relatives of land plants. American Journal of Botany. 95: 643-54. PMID 21632389 DOI: 10.3732/ajb.2007210  0.96
2007 Palenik B, Grimwood J, Aerts A, Rouzé P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, Zhou K, Otillar R, Merchant SS, Podell S, Gaasterland T, ... ... Delwiche C, et al. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proceedings of the National Academy of Sciences of the United States of America. 104: 7705-10. PMID 17460045 DOI: 10.1073/pnas.0611046104  0.96
2007 Sanchez-Puerta MV, Bachvaroff TR, Delwiche CF. Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids. Molecular Phylogenetics and Evolution. 44: 885-97. PMID 17449283 DOI: 10.1016/j.ympev.2007.03.003  0.96
2007 Johnson MD, Oldach D, Delwiche CF, Stoecker DK. Retention of transcriptionally active cryptophyte nuclei by the ciliate Myrionecta rubra. Nature. 445: 426-8. PMID 17251979 DOI: 10.1038/nature05496  0.96
2007 Sanchez-Puerta MV, Lippmeier JC, Apt KE, Delwiche CF. Plastid genes in a non-photosynthetic dinoflagellate. Protist. 158: 105-17. PMID 17150410 DOI: 10.1016/j.protis.2006.09.004  0.96
2007 Delwiche CF. The Origin and Evolution of Dinoflagellates Evolution of Primary Producers in the Sea. 191-205. DOI: 10.1016/B978-012370518-1/50011-4  0.96
2006 Shalchian-Tabrizi K, Skånseng M, Ronquist F, Klaveness D, Bachvaroff TR, Delwiche CF, Botnen A, Tengs T, Jakobsen KS. Heterotachy processes in rhodophyte-derived secondhand plastid genes: Implications for addressing the origin and evolution of dinoflagellate plastids. Molecular Biology and Evolution. 23: 1504-15. PMID 16699169 DOI: 10.1093/molbev/msl011  0.96
2006 Bachvaroff TR, Sanchez-Puerta MV, Delwiche CF. Rate variation as a function of gene origin in plastid-derived genes of peridinin-containing dinoflagellates. Journal of Molecular Evolution. 62: 42-52. PMID 16408243 DOI: 10.1007/s00239-004-0365-4  0.96
2005 Sánchez Puerta MV, Bachvaroff TR, Delwiche CF. The complete plastid genome sequence of the haptophyte Emiliania huxleyi: a comparison to other plastid genomes. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 12: 151-6. PMID 16303746 DOI: 10.1093/dnares/12.2.151  0.96
2005 Bachvaroff TR, Sanchez Puerta MV, Delwiche CF. Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages. Molecular Biology and Evolution. 22: 1772-82. PMID 15917498 DOI: 10.1093/molbev/msi172  0.96
2005 Drummond CS, Hall J, Karol KG, Delwiche CF, McCourt RM. Phylogeny of Spirogyra and Sirogonium (Zygnematophyceae) based on rbcL sequence data Journal of Phycology. 41: 1055-1064. DOI: 10.1111/j.1529-8817.2005.00130.x  0.96
2004 McCourt RM, Delwiche CF, Karol KG. Charophyte algae and land plant origins. Trends in Ecology & Evolution. 19: 661-6. PMID 16701329 DOI: 10.1016/j.tree.2004.09.013  0.96
2004 Johnson MD, Tengs T, Oldach DW, Delwiche CF, Stoecker DK. Highly divergent SSU rRNA genes found in the marine ciliates Myrionecta rubra and Mesodinium pulex. Protist. 155: 347-59. PMID 15552061 DOI: 10.1078/1434461041844222  0.96
2004 Bachvaroff TR, Concepcion GT, Rogers CR, Herman EM, Delwiche CF. Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome. Protist. 155: 65-78. PMID 15144059 DOI: 10.1078/1434461000165  0.96
2004 Sánchez Puerta MV, Bachvaroff TR, Delwiche CF. The complete mitochondrial genome sequence of the haptophyte Emiliania huxleyi and its relation to heterokonts (supplement). Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 11: 67-8. PMID 15141947  0.96
2004 Sánchez Puerta MV, Bachvaroff TR, Delwiche CF. The complete mitochondrial genome sequence of the haptophyte Emiliania huxleyi and its relation to heterokonts. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 11: 1-10. PMID 15141941 DOI: 10.1093/dnares/11.1.1  0.96
2004 Delwiche CF. The genomic palimpsest: Genomics in evolution and ecology Bioscience. 54: 991-1001.  0.96
2003 Charity JC, Pak K, Delwiche CF, Hutcheson SW. Novel exchangeable effector loci associated with the Pseudomonas syringae hrp pathogenicity island: evidence for integron-like assembly from transposed gene cassettes. Molecular Plant-Microbe Interactions : Mpmi. 16: 495-507. PMID 12795376 DOI: 10.1094/MPMI.2003.16.6.495  0.96
2003 Eriksson T, Hibbs MS, Yoder AD, Delwiche CF, Donoghue MJ. The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of chloroplast DNA International Journal of Plant Sciences. 164: 197-211.  0.96
2003 Cimino MT, Reveal JL, Delwiche CF. (1569-1570) Proposals to conserve the name Coleochaete soluta against C. prostrata and the name C. orbicularis against Phyllactidium pulchellum with a note on the name C. nitellarum (Coleochaetaceae, Chlorophyceae) Taxon. 52: 133-134.  0.96
2002 Cimino MT, Delwiche CF. Molecular and morphological data identify a cryptic species complex in endophytic members of the genus Coleochaete bréb. (Charophyta: Coleochaetaceae) Journal of Phycology. 38: 1213-1221. DOI: 10.1046/j.1529-8817.2002.02067.x  0.96
2002 Delwiche CF, Karol KG, Cimino MT. Phylogeny of the genus Coleochaete (Coleochaetales, charophyta) and related taxa inferred by analysis of the chloroplast gene rbcL Journal of Phycology. 38: 394-403. DOI: 10.1046/j.1529-8817.2002.01174.x  0.96
2001 Karol KG, McCourt RM, Cimino MT, Delwiche CF. The closest living relatives of land plants. Science (New York, N.Y.). 294: 2351-3. PMID 11743201 DOI: 10.1126/science.1065156  0.96
2000 Tengs T, Dahlberg OJ, Shalchian-Tabrizi K, Klaveness D, Rudi K, Delwiche CF, Jakobsen KS. Phylogenetic analyses indicate that the 19'Hexanoyloxy-fucoxanthin-containing dinoflagellates have tertiary plastids of haptophyte origin. Molecular Biology and Evolution. 17: 718-29. PMID 10779532  0.96
2000 Oldach DW, Delwiche CF, Jakobsen KS, Tengs T, Brown EG, Kempton JW, Schaefer EF, Bowers HA, Glasgow HB, Burkholder JM, Steidinger KA, Rublee PA. Heteroduplex mobility assay-guided sequence discovery: elucidation of the small subunit (18S) rDNA sequences of Pfiesteria piscicida and related dinoflagellates from complex algal culture and environmental sample DNA pools. Proceedings of the National Academy of Sciences of the United States of America. 97: 4303-8. PMID 10760297  0.96
2000 Cimino MT, Karol KG, Delwiche CF. An artifact in the small subunit rDNA sequence of Chaetosphaeridium globosum (Charophyceae, Streptophyta) Journal of Phycology. 36: 440-442. DOI: 10.1046/j.1529-8817.2000.99167.x  0.96
1999 Delwiche CF. Tracing the Thread of Plastid Diversity through the Tapestry of Life. The American Naturalist. 154: S164-S177. PMID 10527925 DOI: 10.1086/303291  0.96
1998 Roos DS, Delwiche CF. Endosymbioses: Cyclic and permanent in evolution - Response from Roos and Delwiche Trends in Microbiology. 6: 345-346. DOI: 10.1016/S0966-842X(98)01326-2  0.96
1997 Köhler S, Delwiche CF, Denny PW, Tilney LG, Webster P, Wilson RJ, Palmer JD, Roos DS. A plastid of probable green algal origin in Apicomplexan parasites. Science (New York, N.Y.). 275: 1485-9. PMID 9045615 DOI: 10.1126/science.275.5305.1485  0.96
1996 Barns SM, Delwiche CF, Palmer JD, Dawson SC, Hershberger KL, Pace NR. Phylogenetic perspective on microbial life in hydrothermal ecosystems, past and present. Ciba Foundation Symposium. 202: 24-32; discussion 32. PMID 9243008  0.96
1996 Barns SM, Delwiche CF, Palmer JD, Pace NR. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 93: 9188-93. PMID 8799176 DOI: 10.1073/pnas.93.17.9188  0.96
1996 Palmer JD, Delwiche CF. Second-hand chloroplasts and the case of the disappearing nucleus. Proceedings of the National Academy of Sciences of the United States of America. 93: 7432-5. PMID 8755491  0.96
1996 Delwiche CF, Palmer JD. Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Molecular Biology and Evolution. 13: 873-82. PMID 8754222  0.96
1995 Delwiche CF, Kuhsel M, Palmer JD. Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids. Molecular Phylogenetics and Evolution. 4: 110-28. PMID 7663757 DOI: 10.1006/mpev.1995.1012  0.96
1992 Morden CW, Delwiche CF, Kuhsel M, Palmer JD. Gene phylogenies and the endosymbiotic origin of plastids. Bio Systems. 28: 75-90. PMID 1292669 DOI: 10.1016/0303-2647(92)90010-V  0.96
1991 Sharkey TD, Loreto F, Delwiche CF, Treichel IW. Fractionation of Carbon Isotopes during Biogenesis of Atmospheric Isoprene. Plant Physiology. 97: 463-6. PMID 16668410  0.96
1989 Delwiche CF, Graham LE, Thomson N. Lignin-like compounds and sporopollenin in Coleochaete, an algal model for land plant ancestry Science. 245: 399-401.  0.96
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