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Elizabeth G. Wilbanks, Ph.D. - Publications

Affiliations: 
2014 Microbiology University of California, Davis, Davis, CA 
Area:
genomic basis for the origin of novelty in microorganisms; the origin and evolution of symbioses; phylogenomics and genome bioinformatics; microbial community genomics (aka metagenomics); extremophiles; DNA repair
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16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kosmopoulos JC, Campbell DE, Whitaker RJ, Wilbanks EG. Horizontal Gene Transfer and CRISPR Targeting Drive Phage-Bacterial Host Interactions and Coevolution in "Pink Berry" Marine Microbial Aggregates. Applied and Environmental Microbiology. 89: e0017723. PMID 37404190 DOI: 10.1128/aem.00177-23  0.317
2023 Kosmopoulos JC, Campbell DE, Whitaker RJ, Wilbanks EG. Horizontal gene transfer and CRISPR targeting drive phage-bacterial host interactions and coevolution in pink berry marine microbial aggregates. Biorxiv : the Preprint Server For Biology. PMID 36798152 DOI: 10.1101/2023.02.06.527410  0.331
2022 Wilbanks EG, Doré H, Ashby MH, Heiner C, Roberts RJ, Eisen JA. Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity. The Isme Journal. PMID 35459792 DOI: 10.1038/s41396-022-01242-7  0.543
2021 Vu L, Sackett JD, Leach E, Wilbanks E, Rowe AR. Complete Genome Sequence of sp. Strain FeN2, a Novel Cathode-Oxidizing Bacterium Isolated from Catalina Harbor Sediments. Microbiology Resource Announcements. 10: e0086221. PMID 34792381 DOI: 10.1128/MRA.00862-21  0.338
2019 Wilkins LGE, Leray M, O'Dea A, Yuen B, Peixoto R, Pereira TJ, Bik HM, Coil DA, Duffy JE, Herre EA, Lessios H, Lucey NM, Mejia LC, Rasher DB, Sharp K, ... ... Wilbanks EG, et al. Host-associated microbiomes drive structure and function of marine ecosystems. Plos Biology. 17: e3000533. PMID 31710600 DOI: 10.1371/Journal.Pbio.3000533  0.644
2019 Catlett D, Matson PG, Carlson CA, Wilbanks EG, Siegel DA, Iglesias‐Rodriguez MD. Evaluation of accuracy and precision in an amplicon sequencing workflow for marine protist communities Limnology and Oceanography: Methods. 18: 20-40. DOI: 10.1002/Lom3.10343  0.339
2018 James AK, Kelly LW, Nelson CE, Wilbanks EG, Carlson CA. Elevated pCO Alters Marine Heterotrophic Bacterial Community Composition and Metabolic Potential in Response to a Pulse of Phytoplankton Organic Matter. Environmental Microbiology. PMID 30461157 DOI: 10.1111/1462-2920.14484  0.332
2018 Chang R, Bird L, Barr C, Osburn M, Wilbanks E, Nealson K, Rowe A. Thioclava electrotropha sp. nov., a versatile electrode and sulfur-oxidizing bacterium from marine sediments. International Journal of Systematic and Evolutionary Microbiology. PMID 29570444 DOI: 10.1099/Ijsem.0.002723  0.333
2018 Wear EK, Wilbanks EG, Nelson CE, Carlson CA. Primer selection impacts specific population abundances but not community dynamics in a monthly time-series 16S rRNA gene amplicon analysis of coastal marine bacterioplankton. Environmental Microbiology. PMID 29521439 DOI: 10.1111/1462-2920.14091  0.352
2017 Wilbanks EG, Salman-Carvalho V, Jaekel U, Humphrey PT, Eisen JA, Buckley DH, Zinder SH. The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria. Frontiers in Microbiology. 8: 1623. PMID 28928719 DOI: 10.3389/Fmicb.2017.01623  0.505
2015 Persson T, Battenberg K, Demina IV, Vigil-Stenman T, Vanden Heuvel B, Pujic P, Facciotti MT, Wilbanks EG, O'Brien A, Fournier P, Cruz Hernandez MA, Mendoza Herrera A, Médigue C, Normand P, Pawlowski K, et al. Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant. Plos One. 10: e0127630. PMID 26020781 DOI: 10.1371/Journal.Pone.0127630  0.652
2014 Wilbanks EG, Jaekel U, Salman V, Humphrey PT, Eisen JA, Facciotti MT, Buckley DH, Zinder SH, Druschel GK, Fike DA, Orphan VJ. Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh. Environmental Microbiology. 16: 3398-415. PMID 24428801 DOI: 10.1111/1462-2920.12388  0.649
2012 Seitzer P, Wilbanks EG, Larsen DJ, Facciotti MT. A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs. Bmc Bioinformatics. 13: 317. PMID 23181585 DOI: 10.1186/1471-2105-13-317  0.666
2012 Lynch EA, Langille MG, Darling A, Wilbanks EG, Haltiner C, Shao KS, Starr MO, Teiling C, Harkins TT, Edwards RA, Eisen JA, Facciotti MT. Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux. Plos One. 7: e41389. PMID 22848480 DOI: 10.1371/Journal.Pone.0041389  0.689
2012 Wilbanks EG, Larsen DJ, Neches RY, Yao AI, Wu CY, Kjolby RA, Facciotti MT. A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq. Nucleic Acids Research. 40: e74. PMID 22323522 DOI: 10.1093/Nar/Gks063  0.696
2010 Wilbanks EG, Facciotti MT. Evaluation of algorithm performance in ChIP-seq peak detection. Plos One. 5: e11471. PMID 20628599 DOI: 10.1371/Journal.Pone.0011471  0.684
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