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Matthew W. Hahn - Publications

Indiana University, Bloomington, Bloomington, IN, United States 
Evolutionary Genetics

117 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Smith ML, Hahn MW. The Frequency and Topology of Pseudoorthologs. Systematic Biology. PMID 34951639 DOI: 10.1093/sysbio/syab097  0.306
2021 Yan Z, Smith ML, Du P, Hahn MW, Nakhleh L. Species Tree Inference Methods Intended to Deal with Incomplete Lineage Sorting Are Robust to the Presence of Paralogs. Systematic Biology. PMID 34245291 DOI: 10.1093/sysbio/syab056  0.311
2021 Sun C, Huang J, Wang Y, Zhao X, Su L, Thomas GWC, Zhao M, Zhang X, Jungreis I, Kellis M, Vicario S, Sharakhov IV, Bondarenko SM, Hasselmann M, Kim CN, ... ... Hahn MW, et al. Erratum to: Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits. Molecular Biology and Evolution. PMID 34015138 DOI: 10.1093/molbev/msab100  0.328
2021 Wu M, Haak DC, Anderson GJ, Hahn MW, Moyle LC, Guerrero RF. Inferring the genetic basis of sex determination from the genome of a dioecious nightshade. Molecular Biology and Evolution. PMID 33769517 DOI: 10.1093/molbev/msab089  0.418
2020 Vanderpool D, Minh BQ, Lanfear R, Hughes D, Murali S, Harris RA, Raveendran M, Muzny DM, Hibbins MS, Williamson RJ, Gibbs RA, Worley KC, Rogers J, Hahn MW. Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression. Plos Biology. 18: e3000954. PMID 33270638 DOI: 10.1371/journal.pbio.3000954  0.405
2020 Small ST, Labbé F, Lobo NF, Koekemoer LL, Sikaala CH, Neafsey DE, Hahn MW, Fontaine MC, Besansky NJ. Radiation with reticulation marks the origin of a major malaria vector. Proceedings of the National Academy of Sciences of the United States of America. PMID 33262284 DOI: 10.1073/pnas.2018142117  0.378
2020 Thomas GWC, Wang RJ, Nguyen J, Harris RA, Raveendran M, Rogers J, Hahn MW. Origins and long-term patterns of copy-number variation in rhesus macaques. Molecular Biology and Evolution. PMID 33226085 DOI: 10.1093/molbev/msaa303  0.349
2020 Sun C, Huang J, Wang Y, Zhao X, Su L, Thomas GWC, Zhao M, Zhang X, Jungreis I, Kellis M, Vicario S, Sharakhov IV, Bondarenko SM, Hasselmann M, Kim CN, ... ... Hahn M, et al. Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits. Molecular Biology and Evolution. PMID 32946576 DOI: 10.1093/Molbev/Msaa240  0.527
2020 Smith ML, Hahn MW. New Approaches for Inferring Phylogenies in the Presence of Paralogs. Trends in Genetics : Tig. PMID 32921510 DOI: 10.1016/j.tig.2020.08.012  0.466
2020 Wang RJ, Thomas GWC, Raveendran M, Harris RA, Doddapaneni H, Muzny DM, Capitanio JP, Radivojac P, Rogers J, Hahn MW. Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability. Genome Research. PMID 32461224 DOI: 10.1101/Gr.255174.119  0.339
2020 Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, ... ... Hahn MW, et al. Gene content evolution in the arthropods. Genome Biology. 21: 15. PMID 31969194 DOI: 10.1186/S13059-019-1925-7  0.493
2020 Waterhouse RM, Aganezov S, Anselmetti Y, Lee J, Ruzzante L, Reijnders MJMF, Feron R, Bérard S, George P, Hahn MW, Howell PI, Kamali M, Koren S, Lawson D, Maslen G, et al. Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies. Bmc Biology. 18: 1. PMID 31898513 DOI: 10.1186/S12915-019-0728-3  0.457
2019 Rogers J, Raveendran M, Harris RA, Mailund T, Leppälä K, Athanasiadis G, Schierup MH, Cheng J, Munch K, Walker JA, Konkel MK, Jordan V, Steely CJ, Beckstrom TO, Bergey C, ... ... Hahn MW, et al. The comparative genomics and complex population history of baboons. Science Advances. 5: eaau6947. PMID 30854422 DOI: 10.1126/Sciadv.Aau6947  0.505
2018 Adrion JR, Begun DJ, Hahn MW. Patterns of transposable element variation and clinality in Drosophila. Molecular Ecology. PMID 30484926 DOI: 10.1111/mec.14961  0.363
2018 Guerrero RF, Hahn MW. Quantifying the risk of hemiplasy in phylogenetic inference. Proceedings of the National Academy of Sciences of the United States of America. PMID 30482861 DOI: 10.1073/pnas.1811268115  0.389
2018 Rouard M, Droc G, Martin G, Sardos J, Hueber Y, Guignon V, Cenci A, Geigle B, Hibbins MS, Yahiaoui N, Baurens FC, Berry V, Hahn MW, D'Hont A, Roux N. Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana). Genome Biology and Evolution. PMID 30321324 DOI: 10.1093/gbe/evy227  0.493
2018 Wang RJ, Hahn MW. Speciation genes are more likely to have discordant gene trees. Evolution Letters. 2: 281-296. PMID 30283682 DOI: 10.1002/evl3.77  0.331
2018 Thomas GWC, Wang RJ, Puri A, Harris RA, Raveendran M, Hughes DST, Murali SC, Williams LE, Doddapaneni H, Muzny DM, Gibbs RA, Abee CR, Galinski MR, Worley KC, Rogers J, ... ... Hahn MW, et al. Reproductive Longevity Predicts Mutation Rates in Primates. Current Biology : Cb. PMID 30270182 DOI: 10.1016/J.Cub.2018.08.050  0.34
2018 Ayala D, Zhang S, Chateau M, Fouet C, Morlais I, Costantini C, Hahn MW, Besansky N. Association mapping desiccation resistance within chromosomal inversions in the African malaria vector Anopheles gambiae. Molecular Ecology. PMID 30252170 DOI: 10.1111/Mec.14880  0.443
2018 Cheng C, Tan JC, Hahn MW, Besansky NJ. Systems genetic analysis of inversion polymorphisms in the malaria mosquito . Proceedings of the National Academy of Sciences of the United States of America. PMID 29987007 DOI: 10.1073/Pnas.1806760115  0.364
2018 Wu M, Kostyun JL, Hahn MW, Moyle LC. Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance. Molecular Ecology. PMID 29953708 DOI: 10.1111/Mec.14780  0.468
2018 Kern AD, Hahn MW. The neutral theory in light of natural selection. Molecular Biology and Evolution. PMID 29722831 DOI: 10.1093/molbev/msy092  0.655
2018 Warren WC, García-Pérez R, Xu S, Lampert KP, Chalopin D, Stöck M, Loewe L, Lu Y, Kuderna L, Minx P, Montague MJ, Tomlinson C, Hillier LW, Murphy DN, Wang J, ... ... Hahn MW, et al. Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly. Nature Ecology & Evolution. PMID 29434351 DOI: 10.1038/S41559-018-0473-Y  0.51
2018 Palesch D, Bosinger SE, Tharp GK, Vanderford TH, Paiardini M, Chahroudi A, Johnson ZP, Kirchhoff F, Hahn BH, Norgren RB, Patel NB, Sodora DL, Dawoud RA, Stewart CB, Seepo SM, ... ... Hahn MW, et al. Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host. Nature. 553: 77-81. PMID 29300007 DOI: 10.1038/Nature25140  0.426
2017 Miles A, Harding NJ, Bottà G, Clarkson CS, Antão T, Kozak K, Schrider DR, Kern AD, Redmond S, Sharakhov I, Pearson RD, Bergey C, Fontaine MC, Donnelly MJ, Lawniczak MKN, ... ... Hahn MW, et al. Genetic diversity of the African malaria vector Anopheles gambiae. Nature. 552: 96-100. PMID 29186111 DOI: 10.1038/Nature24995  0.817
2017 Guerrero RF, Hahn MW. Speciation as a Sieve for Ancestral Polymorphism. Molecular Ecology. PMID 28792649 DOI: 10.1111/mec.14290  0.506
2017 Broz AK, Guerrero RF, Randle AM, Baek YS, Hahn MW, Bedinger PA. Transcriptomic analysis links gene expression to unilateral pollen-pistil reproductive barriers. Bmc Plant Biology. 17: 81. PMID 28438120 DOI: 10.1186/S12870-017-1032-4  0.414
2017 Adrion JR, Song MJ, Schrider DR, Hahn MW, Schaack S. Genome-wide estimates of transposable element insertion and deletion rates in Drosophila melanogaster. Genome Biology and Evolution. PMID 28338986 DOI: 10.1093/Gbe/Evx050  0.754
2017 Roda F, Mendes FK, Hahn MW, Hopkins R. Genomic evidence of gene flow during reinforcement in Texas Phlox. Molecular Ecology. PMID 28141906 DOI: 10.1111/Mec.14041  0.637
2017 Thomas GW, Hahn MW, Hahn Y. The effects of increasing the number of taxa on inferences of molecular convergence. Genome Biology and Evolution. PMID 28057728 DOI: 10.1093/gbe/evw306  0.392
2016 Mendes FK, Hahn Y, Hahn MW. Gene tree discordance can generate patterns of diminishing convergence over time. Molecular Biology and Evolution. PMID 27634870 DOI: 10.1093/molbev/msw197  0.427
2016 Pease JB, Guerrero RF, Sherman NA, Hahn MW, Moyle LC. Molecular mechanisms of postmating prezygotic reproductive isolation uncovered by transcriptome analysis. Molecular Ecology. PMID 27136303 DOI: 10.1111/Mec.13679  0.757
2016 Hall AB, Papathanos PA, Sharma A, Cheng C, Akbari OS, Assour L, Bergman NH, Cagnetti A, Crisanti A, Dottorini T, Fiorentini E, Galizi R, Hnath J, Jiang X, Koren S, ... ... Hahn MW, et al. Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035980 DOI: 10.1073/Pnas.1525164113  0.472
2016 Rosenzweig BK, Pease JB, Besansky NJ, Hahn MW. Powerful methods for detecting introgressed regions from population genomic data. Molecular Ecology. PMID 26945783 DOI: 10.1111/Mec.13610  0.794
2016 Pease JB, Haak DC, Hahn MW, Moyle LC. Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation. Plos Biology. 14: e1002379. PMID 26871574 DOI: 10.1371/Journal.Pbio.1002379  0.765
2016 Guerrero RF, Posto AL, Moyle LC, Hahn MW. Genome-wide patterns of regulatory divergence revealed by introgression lines. Evolution; International Journal of Organic Evolution. PMID 26842879 DOI: 10.1111/Evo.12875  0.479
2016 Schrider DR, Hahn MW, Begun DJ. Parallel evolution of copy-number variation across continents in Drosophila melanogaster. Molecular Biology and Evolution. PMID 26809315 DOI: 10.1093/Molbev/Msw014  0.76
2016 Wen D, Yu Y, Hahn MW, Nakhleh L. Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis. Molecular Ecology. PMID 26808290 DOI: 10.1111/Mec.13544  0.424
2015 Mallet J, Besansky N, Hahn MW. How reticulated are species? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 26709836 DOI: 10.1002/Bies.201500149  0.433
2015 Hahn MW, Nakhleh L. Irrational exuberance for resolved species trees. Evolution; International Journal of Organic Evolution. PMID 26639662 DOI: 10.1111/Evo.12832  0.414
2015 Warren WC, Jasinska AJ, Garcia-Perez R, Svardal H, Tomlinson C, Rocchi M, Archidiacono N, Capozzi O, Minx P, Montague MJ, Kyung K, Hillier LW, Kremitzki M, Graves T, Chiang C, ... ... Hahn MW, et al. The genome of the vervet (Chlorocebus aethiops sabaeus). Genome Research. PMID 26377836 DOI: 10.1101/Gr.192922.115  0.501
2015 Cooper BS, Burrus CR, Ji C, Hahn MW, Montooth KL. Similar Efficacies of Selection Shape Mitochondrial and Nuclear Genes in Both Drosophila melanogaster and Homo sapiens. G3 (Bethesda, Md.). 5: 2165-76. PMID 26297726 DOI: 10.1534/G3.114.016493  0.413
2015 Adrion JR, Hahn MW, Cooper BS. Revisiting classic clines in Drosophila melanogaster in the age of genomics. Trends in Genetics : Tig. PMID 26072452 DOI: 10.1016/J.Tig.2015.05.006  0.494
2015 Pease JB, Hahn MW. Detection and Polarization of Introgression in a Five-Taxon Phylogeny. Systematic Biology. 64: 651-62. PMID 25888025 DOI: 10.1093/sysbio/syv023  0.758
2015 Schrider DR, Mendes FK, Hahn MW, Kern AD. Soft shoulders ahead: spurious signatures of soft and partial selective sweeps result from linked hard sweeps. Genetics. 200: 267-84. PMID 25716978 DOI: 10.1534/Genetics.115.174912  0.807
2015 Thomas GW, Hahn MW. Determining the Null Model for Detecting Adaptive Convergence from Genomic Data: A Case Study using Echolocating Mammals. Molecular Biology and Evolution. 32: 1232-6. PMID 25631926 DOI: 10.1093/molbev/msv013  0.468
2015 Foote AD, Liu Y, Thomas GW, Vina? T, Alföldi J, Deng J, Dugan S, van Elk CE, Hunter ME, Joshi V, Khan Z, Kovar C, Lee SL, Lindblad-Toh K, Mancia A, ... ... Hahn MW, et al. Convergent evolution of the genomes of marine mammals. Nature Genetics. 47: 272-5. PMID 25621460 DOI: 10.1038/Ng.3198  0.488
2015 Muir CD, Hahn MW. The limited contribution of reciprocal gene loss to increased speciation rates following whole-genome duplication. The American Naturalist. 185: 70-86. PMID 25560554 DOI: 10.1086/679108  0.531
2015 Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, ... ... Hahn MW, et al. Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes. Science (New York, N.Y.). 347: 1258522. PMID 25554792 DOI: 10.1126/Science.1258522  0.741
2015 Fontaine MC, Pease JB, Steele A, Waterhouse RM, Neafsey DE, Sharakhov IV, Jiang X, Hall AB, Catteruccia F, Kakani E, Mitchell SN, Wu YC, Smith HA, Love RR, Lawniczak MK, ... ... Hahn MW, et al. Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics. Science (New York, N.Y.). 347: 1258524. PMID 25431491 DOI: 10.1126/Science.1258524  0.779
2014 Denton JF, Lugo-Martinez J, Tucker AE, Schrider DR, Warren WC, Hahn MW. Extensive error in the number of genes inferred from draft genome assemblies. Plos Computational Biology. 10: e1003998. PMID 25474019 DOI: 10.1371/Journal.Pcbi.1003998  0.776
2014 Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SM, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, ... ... Hahn MW, et al. Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Proceedings of the National Academy of Sciences of the United States of America. 111: 17230-5. PMID 25385592 DOI: 10.1073/Pnas.1410083111  0.535
2014 Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, ... ... Hahn MW, et al. Gibbon genome and the fast karyotype evolution of small apes. Nature. 513: 195-201. PMID 25209798 DOI: 10.1038/Nature13679  0.514
2014 Bachtrog D, Mank JE, Peichel CL, Kirkpatrick M, Otto SP, Ashman TL, Hahn MW, Kitano J, Mayrose I, Ming R, Perrin N, Ross L, Valenzuela N, Vamosi JC. Sex determination: why so many ways of doing it? Plos Biology. 12: e1001899. PMID 24983465 DOI: 10.1371/Journal.Pbio.1001899  0.345
2014 Cruickshank TE, Hahn MW. Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow. Molecular Ecology. 23: 3133-57. PMID 24845075 DOI: 10.1111/mec.12796  0.506
2014 Cassone BJ, Kamdem C, Cheng C, Tan JC, Hahn MW, Costantini C, Besansky NJ. Gene expression divergence between malaria vector sibling species Anopheles gambiae and An. coluzzii from rural and urban Yaoundé Cameroon. Molecular Ecology. 23: 2242-59. PMID 24673723 DOI: 10.1111/Mec.12733  0.478
2014 Ashman TL, Bachtrog D, Blackmon H, Goldberg EE, Hahn MW, Kirkpatrick M, Kitano J, Mank JE, Mayrose I, Ming R, Otto SP, Peichel CL, Pennell MW, Perrin N, Ross L, et al. Tree of Sex: A database of sexual systems Scientific Data. 1. DOI: 10.1038/Sdata.2014.15  0.692
2013 Pease JB, Hahn MW. More accurate phylogenies inferred from low-recombination regions in the presence of incomplete lineage sorting. Evolution; International Journal of Organic Evolution. 67: 2376-84. PMID 23888858 DOI: 10.1111/evo.12118  0.794
2013 Schrider DR, Houle D, Lynch M, Hahn MW. Rates and genomic consequences of spontaneous mutational events in Drosophila melanogaster. Genetics. 194: 937-54. PMID 23733788 DOI: 10.1534/Genetics.113.151670  0.73
2013 Han MV, Thomas GW, Lugo-Martinez J, Hahn MW. Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3. Molecular Biology and Evolution. 30: 1987-97. PMID 23709260 DOI: 10.1093/molbev/mst100  0.688
2013 Neafsey DE, Christophides GK, Collins FH, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Howell PI, Kafatos FC, Lawson D, Muskavitch MA, Waterhouse RM, Williams LJ, Besansky NJ. The evolution of the Anopheles 16 genomes project. G3 (Bethesda, Md.). 3: 1191-4. PMID 23708298 DOI: 10.1534/G3.113.006247  0.452
2013 Schrider DR, Begun DJ, Hahn MW. Detecting highly differentiated copy-number variants from pooled population sequencing. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 344-55. PMID 23424139  0.714
2013 Schrider DR, Navarro FC, Galante PA, Parmigiani RB, Camargo AA, Hahn MW, de Souza SJ. Gene copy-number polymorphism caused by retrotransposition in humans. Plos Genetics. 9: e1003242. PMID 23359205 DOI: 10.1371/Journal.Pgen.1003242  0.795
2012 Casola C, Conant GC, Hahn MW. Very low rate of gene conversion in the yeast genome. Molecular Biology and Evolution. 29: 3817-26. PMID 22844073 DOI: 10.1093/molbev/mss192  0.516
2012 Langley CH, Stevens K, Cardeno C, Lee YC, Schrider DR, Pool JE, Langley SA, Suarez C, Corbett-Detig RB, Kolaczkowski B, Fang S, Nista PM, Holloway AK, Kern AD, Dewey CN, ... ... Hahn MW, et al. Genomic variation in natural populations of Drosophila melanogaster. Genetics. 192: 533-98. PMID 22673804 DOI: 10.1534/Genetics.112.142018  0.833
2012 Pease JB, Hahn MW. Sex chromosomes evolved from independent ancestral linkage groups in winged insects. Molecular Biology and Evolution. 29: 1645-53. PMID 22319158 DOI: 10.1093/molbev/mss010  0.761
2012 Cheng C, White BJ, Kamdem C, Mockaitis K, Costantini C, Hahn MW, Besansky NJ. Ecological genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach. Genetics. 190: 1417-32. PMID 22209907 DOI: 10.1534/Genetics.111.137794  0.53
2012 Hahn MW, White BJ, Muir CD, Besansky NJ. No evidence for biased co-transmission of speciation islands in Anopheles gambiae. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 374-84. PMID 22201167 DOI: 10.1098/Rstb.2011.0188  0.446
2012 Han MV, Hahn MW. Inferring the history of interchromosomal gene transposition in Drosophila using n-dimensional parsimony. Genetics. 190: 813-25. PMID 22095076 DOI: 10.1534/genetics.111.135947  0.713
2012 Casola C, Zekonyte U, Phillips AD, Cooper DN, Hahn MW. IntErlocus gene conversion events introduce deleterious mutations into at least 1% of human genes associated with inherited disease Genome Research. 22: 429-435. PMID 22090377 DOI: 10.1101/Gr.127738.111  0.42
2011 Schrider DR, Stevens K, Cardeño CM, Langley CH, Hahn MW. Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster. Genome Research. 21: 2087-95. PMID 22135405 DOI: 10.1101/Gr.116434.110  0.791
2011 Toups MA, Pease JB, Hahn MW. No excess gene movement is detected off the avian or lepidopteran Z chromosome. Genome Biology and Evolution. 3: 1381-90. PMID 22024813 DOI: 10.1093/gbe/evr109  0.757
2011 Schrider DR, Gout JF, Hahn MW. Very few RNA and DNA sequence differences in the human transcriptome. Plos One. 6: e25842. PMID 22022455 DOI: 10.1371/Journal.Pone.0025842  0.712
2011 Schrider DR, Hourmozdi JN, Hahn MW. Pervasive multinucleotide mutational events in eukaryotes. Current Biology : Cb. 21: 1051-4. PMID 21636278 DOI: 10.1016/J.Cub.2011.05.013  0.712
2011 Cassone BJ, Molloy MJ, Cheng C, Tan JC, Hahn MW, Besansky NJ. Divergent transcriptional response to thermal stress by Anopheles gambiae larvae carrying alternative arrangements of inversion 2La. Molecular Ecology. 20: 2567-80. PMID 21535279 DOI: 10.1111/J.1365-294X.2011.05114.X  0.33
2011 Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Hahn MW, et al. Comparative and demographic analysis of orang-utan genomes. Nature. 469: 529-33. PMID 21270892 DOI: 10.1038/Nature09687  0.782
2010 Kostka D, Hahn MW, Pollard KS. Noncoding sequences near duplicated genes evolve rapidly Genome Biology and Evolution. 2: 518-533. PMID 20660939 DOI: 10.1093/Gbe/Evq037  0.54
2010 Schrider DR, Hahn MW. Gene copy-number polymorphism in nature. Proceedings. Biological Sciences / the Royal Society. 277: 3213-21. PMID 20591863 DOI: 10.1098/Rspb.2010.1180  0.783
2010 Turner TL, Hahn MW. Genomic islands of speciation or genomic islands and speciation? Molecular Ecology. 19: 848-50. PMID 20456221 DOI: 10.1111/J.1365-294X.2010.04532.X  0.512
2010 Moyle LC, Muir CD, Han MV, Hahn MW. The contribution of gene movement to the "two rules of speciation". Evolution; International Journal of Organic Evolution. 64: 1541-57. PMID 20298429 DOI: 10.1111/J.1558-5646.2010.00990.X  0.684
2010 Casola C, Ganote CL, Hahn MW. Nonallelic gene conversion in the genus Drosophila. Genetics. 185: 95-103. PMID 20215470 DOI: 10.1534/Genetics.110.115444  0.468
2010 Schrider DR, Hahn MW. Lower linkage disequilibrium at CNVs is due to both recurrent mutation and transposing duplications. Molecular Biology and Evolution. 27: 103-11. PMID 19745000 DOI: 10.1093/Molbev/Msp210  0.741
2009 Meisel RP, Han MV, Hahn MW. A complex suite of forces drives gene traffic from Drosophila X chromosomes. Genome Biology and Evolution. 1: 176-88. PMID 20333188 DOI: 10.1093/Gbe/Evp018  0.798
2009 Schrider DR, Costello JC, Hahn MW. All human-specific gene losses are present in the genome as pseudogenes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1419-27. PMID 19754271 DOI: 10.1089/Cmb.2009.0085  0.765
2009 Casola C, Hahn MW. Gene conversion among paralogs results in moderate false detection of positive selection using likelihood methods. Journal of Molecular Evolution. 68: 679-87. PMID 19471989 DOI: 10.1007/S00239-009-9241-6  0.443
2009 Han MV, Demuth JP, McGrath CL, Casola C, Hahn MW. Adaptive evolution of young gene duplicates in mammals. Genome Research. 19: 859-67. PMID 19411603 DOI: 10.1101/Gr.085951.108  0.799
2009 McGrath CL, Casola C, Hahn MW. Minimal effect of ectopic gene conversion among recent duplicates in four mammalian genomes. Genetics. 182: 615-22. PMID 19307604 DOI: 10.1534/Genetics.109.101428  0.496
2009 Sharma AK, Sommerfeld K, Bullerjahn GS, Matteson AR, Wilhelm SW, Jezbera J, Brandt U, Doolittle WF, Hahn MW. Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria. The Isme Journal. 3: 726-37. PMID 19242530 DOI: 10.1038/Ismej.2009.13  0.309
2009 Han MV, Hahn MW. Identifying parent-daughter relationships among duplicated genes. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 114-25. PMID 19213133  0.656
2009 Demuth JP, Hahn MW. The life and death of gene families. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 29-39. PMID 19153999 DOI: 10.1002/Bies.080085  0.661
2008 Li YF, Costello JC, Holloway AK, Hahn MW. "Reverse ecology" and the power of population genomics. Evolution; International Journal of Organic Evolution. 62: 2984-94. PMID 18752601 DOI: 10.1111/J.1558-5646.2008.00486.X  0.487
2008 Cassone BJ, Mouline K, Hahn MW, White BJ, Pombi M, Simard F, Costantini C, Besansky NJ. Differential gene expression in incipient species of Anopheles gambiae. Molecular Ecology. 17: 2491-504. PMID 18430144 DOI: 10.1111/J.1365-294X.2008.03774.X  0.446
2008 Costello JC, Han MV, Hahn MW. Limitations of pseudogenes in identifying gene losses Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5267: 14-25. DOI: 10.1007/978-3-540-87989-3_2  0.623
2007 White BJ, Hahn MW, Pombi M, Cassone BJ, Lobo NF, Simard F, Besansky NJ. Localization of candidate regions maintaining a common polymorphic inversion (2La) in Anopheles gambiae. Plos Genetics. 3: e217. PMID 18069896 DOI: 10.1371/Journal.Pgen.0030217  0.465
2007 Hahn MW, Han MV, Han SG. Gene family evolution across 12 Drosophila genomes. Plos Genetics. 3: e197. PMID 17997610 DOI: 10.1371/journal.pgen.0030197  0.728
2007 Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, Carlson JW, Crosby MA, Rasmussen MD, Roy S, Deoras AN, Ruby JG, Brennecke J, Hodges E, ... ... Hahn MW, et al. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature. 450: 219-32. PMID 17994088 DOI: 10.1038/Nature06340  0.713
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Hahn MW, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.744
2007 Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh YP, Hahn MW, Nista PM, Jones CD, Kern AD, Dewey CN, Pachter L, Myers E, Langley CH. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. Plos Biology. 5: e310. PMID 17988176 DOI: 10.1371/Journal.Pbio.0050310  0.756
2007 Hahn MW, Demuth JP, Han SG. Accelerated rate of gene gain and loss in primates. Genetics. 177: 1941-9. PMID 17947411 DOI: 10.1534/Genetics.107.080077  0.677
2007 Turner TL, Hahn MW. Locus- and population-specific selection and differentiation between incipient species of Anopheles gambiae. Molecular Biology and Evolution. 24: 2132-8. PMID 17636041 DOI: 10.1093/Molbev/Msm143  0.428
2007 Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science (New York, N.Y.). 316: 222-34. PMID 17431167 DOI: 10.1126/Science.1139247  0.794
2007 Bentley RA, Lipo CP, Herzog HA, Hahn MW. Regular rates of popular culture change reflect random copying Evolution and Human Behavior. 28: 151-158. DOI: 10.1016/J.Evolhumbehav.2006.10.002  0.326
2006 Demuth JP, De Bie T, Stajich JE, Cristianini N, Hahn MW. The evolution of mammalian gene families. Plos One. 1: e85. PMID 17183716 DOI: 10.1371/Journal.Pone.0000085  0.684
2006 De Bie T, Cristianini N, Demuth JP, Hahn MW. CAFE: a computational tool for the study of gene family evolution. Bioinformatics (Oxford, England). 22: 1269-71. PMID 16543274 DOI: 10.1093/Bioinformatics/Btl097  0.603
2005 Rockman MV, Hahn MW, Soranzo N, Zimprich F, Goldstein DB, Wray GA. Ancient and recent positive selection transformed opioid cis-regulation in humans. Plos Biology. 3: e387. PMID 16274263 DOI: 10.1371/Journal.Pbio.0030387  0.367
2005 Hahn MW, De Bie T, Stajich JE, Nguyen C, Cristianini N. Estimating the tempo and mode of gene family evolution from comparative genomic data. Genome Research. 15: 1153-60. PMID 16077014 DOI: 10.1101/Gr.3567505  0.484
2005 Turner TL, Hahn MW, Nuzhdin SV. Genomic islands of speciation in Anopheles gambiae. Plos Biology. 3: e285. PMID 16076241 DOI: 10.1371/Journal.Pbio.0030285  0.49
2005 Hahn MW, Mezey JG, Begun DJ, Gillespie JH, Kern AD, Langley CH, Moyle LC. Evolutionary genomics: codon bias and selection on single genomes. Nature. 433: E5-6; discussion E7-. PMID 15662370 DOI: 10.1038/Nature03221  0.73
2005 Hahn MW, Kern AD. Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. Molecular Biology and Evolution. 22: 803-6. PMID 15616139 DOI: 10.1093/molbev/msi072  0.627
2005 Stajich JE, Hahn MW. Disentangling the effects of demography and selection in human history. Molecular Biology and Evolution. 22: 63-73. PMID 15356276 DOI: 10.1093/Molbev/Msh252  0.412
2004 Rockman MV, Hahn MW, Soranzo N, Loisel DA, Goldstein DB, Wray GA. Positive selection on MMP3 regulation has shaped heart disease risk. Current Biology : Cb. 14: 1531-9. PMID 15341739 DOI: 10.1016/J.Cub.2004.08.051  0.38
2004 Hahn MW, Rockman MV, Soranzo N, Goldstein DB, Wray GA. Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the factor VII locus in humans. Genetics. 167: 867-77. PMID 15238535 DOI: 10.1534/Genetics.103.025726  0.373
2003 Wray GA, Hahn MW, Abouheif E, Balhoff JP, Pizer M, Rockman MV, Romano LA. The evolution of transcriptional regulation in eukaryotes. Molecular Biology and Evolution. 20: 1377-419. PMID 12777501 DOI: 10.1093/Molbev/Msg140  0.428
2003 Hahn MW, Stajich JE, Wray GA. The effects of selection against spurious transcription factor binding sites. Molecular Biology and Evolution. 20: 901-6. PMID 12716998 DOI: 10.1093/Molbev/Msg096  0.391
2002 Tiffin P, Hahn MW. Coding sequence divergence between two closely related plant species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis. Journal of Molecular Evolution. 54: 746-53. PMID 12029356 DOI: 10.1007/S00239-001-0074-1  0.604
2002 Hahn MW, Rausher MD, Cunningham CW. Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7. Genetics. 161: 11-20. PMID 12019219  0.561
2002 Hahn MW, Wray GA. The g-value paradox. Evolution & Development. 4: 73-5. PMID 12004964 DOI: 10.1046/J.1525-142X.2002.01069.X  0.469
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