| Year |
Citation |
Score |
| 2023 |
Rebbeck T, Janivara R, Chen W, Hazra U, Baichoo S, Agalliu I, Kachambwa P, Simonti C, Brown L, Tambe S, Kim M, Harlemon M, Jalloh M, Muzondiwa D, Naidoo D, ... ... Gusev A, et al. Heterogeneous genetic architectures and evolutionary genomics of prostate cancer in Sub-Saharan Africa. Research Square. PMID 37886553 DOI: 10.21203/rs.3.rs-3378303/v1 |
0.318 |
|
| 2023 |
Wei X, Robles CR, Pazokitoroudi A, Ganna A, Gusev A, Durvasula A, Gazal S, Loh PR, Reich D, Sankararaman S. The lingering effects of Neanderthal introgression on human complex traits. Elife. 12. PMID 36939312 DOI: 10.7554/eLife.80757 |
0.32 |
|
| 2022 |
Morova T, Ding Y, Huang CF, Sar F, Schwarz T, Giambartolomei C, Baca SC, Grishin D, Hach F, Gusev A, Freedman ML, Pasaniuc B, Lack NA. Optimized high-throughput screening of non-coding variants identified from genome-wide association studies. Nucleic Acids Research. PMID 36546757 DOI: 10.1093/nar/gkac1198 |
0.321 |
|
| 2022 |
Thompson M, Gordon MG, Lu A, Tandon A, Halperin E, Gusev A, Ye CJ, Balliu B, Zaitlen N. Multi-context genetic modeling of transcriptional regulation resolves novel disease loci. Nature Communications. 13: 5704. PMID 36171194 DOI: 10.1038/s41467-022-33212-0 |
0.329 |
|
| 2022 |
Lu Z, Gopalan S, Yuan D, Conti DV, Pasaniuc B, Gusev A, Mancuso N. Multi-ancestry fine-mapping improves precision to identify causal genes in transcriptome-wide association studies. American Journal of Human Genetics. 109: 1388-1404. PMID 35931050 DOI: 10.1016/j.ajhg.2022.07.002 |
0.336 |
|
| 2020 |
Nait Saada J, Kalantzis G, Shyr D, Cooper F, Robinson M, Gusev A, Palamara PF. Identity-by-descent detection across 487,409 British samples reveals fine scale population structure and ultra-rare variant associations. Nature Communications. 11: 6130. PMID 33257650 DOI: 10.1038/s41467-020-19588-x |
0.718 |
|
| 2020 |
Blatt M, Gusev A, Polyakov Y, Rohloff K, Vaikuntanathan V. Optimized homomorphic encryption solution for secure genome-wide association studies. Bmc Medical Genomics. 13: 83. PMID 32693805 DOI: 10.1186/S12920-020-0719-9 |
0.457 |
|
| 2020 |
Yao DW, O'Connor LJ, Price AL, Gusev A. Quantifying genetic effects on disease mediated by assayed gene expression levels. Nature Genetics. 52: 626-633. PMID 32424349 DOI: 10.1038/S41588-020-0625-2 |
0.386 |
|
| 2020 |
Blatt M, Gusev A, Polyakov Y, Goldwasser S. Secure large-scale genome-wide association studies using homomorphic encryption. Proceedings of the National Academy of Sciences of the United States of America. PMID 32398369 DOI: 10.1073/Pnas.1918257117 |
0.393 |
|
| 2020 |
Corona RI, Seo JH, Lin X, Hazelett DJ, Reddy J, Fonseca MAS, Abassi F, Lin YG, Mhawech-Fauceglia PY, Shah SP, Huntsman DG, Gusev A, Karlan BY, Berman BP, Freedman ML, et al. Non-coding somatic mutations converge on the PAX8 pathway in ovarian cancer. Nature Communications. 11: 2020. PMID 32332753 DOI: 10.1038/S41467-020-15951-0 |
0.32 |
|
| 2020 |
Wang AT, Shetty A, O'Connor E, Bell C, Pomerantz MM, Freedman ML, Gusev A. Allele-Specific QTL Fine Mapping with PLASMA. American Journal of Human Genetics. PMID 32004450 DOI: 10.1016/J.Ajhg.2019.12.011 |
0.383 |
|
| 2020 |
Abou Alaiwi S, Nassar A, Adib E, Akl E, Groha S, Esplin ED, Nielsen S, Yang S, McGregor BA, Pomerantz M, Gusev A, Rana HQ, Sonpavde G, Garber JE, Freedman ML, et al. Prevalence of pathogenic germline risk variants (PVs) in 1,829 renal cell carcinoma (RCC) patients (pts). Journal of Clinical Oncology. 38: 659-659. DOI: 10.1200/Jco.2020.38.6_Suppl.659 |
0.32 |
|
| 2020 |
Gomy I, Jalloul N, Stokes S, Gusev A, Ganesan S, Garber J, Khiabanian H. Abstract LB-245: Validating models of imputing germline versus somatic status for variants detected by tumor-only genomic profiling using germline clinical testing data Cancer Research. 80. DOI: 10.1158/1538-7445.Am2020-Lb-245 |
0.372 |
|
| 2020 |
Liu Y, Gusev A, Heng YJ, Alexandrov LB, Kraft P. Abstract 2318: The association between somatic mutational profiles and germline polygenic risk scores in TCGA Epidemiology. 80: 2318-2318. DOI: 10.1158/1538-7445.Am2020-2318 |
0.33 |
|
| 2019 |
van de Geijn B, Finucane H, Gazal S, Hormozdiari F, Amariuta T, Liu X, Gusev A, Loh PR, Reshef Y, Kichaev G, Raychauduri S, Price AL. Annotations capturing cell-type-specific TF binding explain a large fraction of disease heritability. Human Molecular Genetics. PMID 31595288 DOI: 10.1093/Hmg/Ddz226 |
0.318 |
|
| 2019 |
Houlahan KE, Shiah YJ, Gusev A, Yuan J, Ahmed M, Shetty A, Ramanand SG, Yao CQ, Bell C, O'Connor E, Huang V, Fraser M, Heisler LE, Livingstone J, Yamaguchi TN, et al. Genome-wide germline correlates of the epigenetic landscape of prostate cancer. Nature Medicine. PMID 31591588 DOI: 10.1038/S41591-019-0579-Z |
0.315 |
|
| 2019 |
Gazal S, Finucane HK, Furlotte NA, Loh PR, Palamara PF, Liu X, Schoech A, Bulik-Sullivan B, Neale BM, Gusev A, Price AL. Author Correction: Linkage disequilibrium-dependent architecture of human complex traits shows action of negative selection. Nature Genetics. PMID 31273336 DOI: 10.1038/S41588-019-0468-X |
0.682 |
|
| 2019 |
Gusev A, Lawrenson K, Lin X, Lyra PC, Kar S, Vavra KC, Segato F, Fonseca MAS, Lee JM, Pejovic T, Liu G, Karlan BY, Freedman ML, Noushmehr H, et al. A transcriptome-wide association study of high-grade serous epithelial ovarian cancer identifies new susceptibility genes and splice variants. Nature Genetics. PMID 31043753 DOI: 10.1038/S41588-019-0395-X |
0.378 |
|
| 2019 |
Mancuso N, Freund MK, Johnson R, Shi H, Kichaev G, Gusev A, Pasaniuc B. Probabilistic fine-mapping of transcriptome-wide association studies. Nature Genetics. 51: 675-682. PMID 30926970 DOI: 10.1038/S41588-019-0367-1 |
0.365 |
|
| 2019 |
Corona RI, Seo J, Hazelett DJ, Lin X, Mhawech-Fauceglia PY, Lester J, Shah SP, Huntsman DG, Karlan BY, Gusev A, Berman BP, Freedman ML, Gayther SA, Lawrenson K. Abstract AP11: IDENTIFYING FUNCTIONAL NONCODING SOMATIC MUTATIONS IN OVARIAN CANCER Clinical Cancer Research. 25. DOI: 10.1158/1557-3265.Ovcasymp18-Ap11 |
0.354 |
|
| 2018 |
Mancuso N, Gayther S, Gusev A, Zheng W, Penney KL, Kote-Jarai Z, Eeles R, Freedman M, Haiman C, Pasaniuc B. Large-scale transcriptome-wide association study identifies new prostate cancer risk regions. Nature Communications. 9: 4079. PMID 30287866 DOI: 10.1038/S41467-018-06302-1 |
0.366 |
|
| 2018 |
Reshef YA, Finucane HK, Kelley DR, Gusev A, Kotliar D, Ulirsch JC, Hormozdiari F, Nasser J, O'Connor L, van de Geijn B, Loh PR, Grossman SR, Bhatia G, Gazal S, Palamara PF, et al. Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk. Nature Genetics. PMID 30177862 DOI: 10.1038/S41588-018-0196-7 |
0.725 |
|
| 2018 |
Hormozdiari F, Gazal S, van de Geijn B, Finucane HK, Ju CJ, Loh PR, Schoech A, Reshef Y, Liu X, O'Connor L, Gusev A, Eskin E, Price AL. Leveraging molecular quantitative trait loci to understand the genetic architecture of diseases and complex traits. Nature Genetics. PMID 29942083 DOI: 10.1038/S41588-018-0148-2 |
0.429 |
|
| 2018 |
Wu L, Shi W, Long J, Guo X, Michailidou K, Beesley J, Bolla MK, Shu XO, Lu Y, Cai Q, Al-Ejeh F, Rozali E, Wang Q, Dennis J, Li B, ... ... Gusev A, et al. A transcriptome-wide association study of 229,000 women identifies new candidate susceptibility genes for breast cancer. Nature Genetics. PMID 29915430 DOI: 10.1038/S41588-018-0132-X |
0.352 |
|
| 2018 |
Barfield R, Feng H, Gusev A, Wu L, Zheng W, Pasaniuc B, Kraft P. Transcriptome-wide association studies accounting for colocalization using Egger regression. Genetic Epidemiology. PMID 29808603 DOI: 10.1002/Gepi.22131 |
0.426 |
|
| 2018 |
Gusev A, Mancuso N, Won H, Kousi M, Finucane HK, Reshef Y, Song L, Safi A, McCarroll S, Neale BM, Ophoff RA, O'Donovan MC, Crawford GE, Geschwind DH, et al. Transcriptome-wide association study of schizophrenia and chromatin activity yields mechanistic disease insights. Nature Genetics. 50: 538-548. PMID 29632383 DOI: 10.1038/S41588-018-0092-1 |
0.385 |
|
| 2018 |
Finucane HK, Reshef YA, Anttila V, Slowikowski K, Gusev A, Byrnes A, Gazal S, Loh PR, Lareau C, Shoresh N, Genovese G, Saunders A, Macosko E, Pollack S, et al. Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types. Nature Genetics. 50: 621-629. PMID 29632380 DOI: 10.1038/S41588-018-0081-4 |
0.372 |
|
| 2018 |
Roytman M, Kichaev G, Gusev A, Pasaniuc B. Methods for fine-mapping with chromatin and expression data. Plos Genetics. 14: e1007240. PMID 29481575 DOI: 10.1371/Journal.Pgen.1007240 |
0.387 |
|
| 2017 |
Gazal S, Finucane HK, Furlotte NA, Loh PR, Palamara PF, Liu X, Schoech A, Bulik-Sullivan B, Neale BM, Gusev A, Price AL. Linkage disequilibrium-dependent architecture of human complex traits shows action of negative selection. Nature Genetics. PMID 28892061 DOI: 10.1038/Ng.3954 |
0.711 |
|
| 2017 |
Liu X, Finucane HK, Gusev A, Bhatia G, Gazal S, O'Connor L, Bulik-Sullivan B, Wright FA, Sullivan PF, Neale BM, Price AL. Functional Architectures of Local and Distal Regulation of Gene Expression in Multiple Human Tissues. American Journal of Human Genetics. PMID 28343628 DOI: 10.1016/J.Ajhg.2017.03.002 |
0.351 |
|
| 2017 |
Mancuso N, Shi H, Goddard P, Kichaev G, Gusev A, Pasaniuc B. Integrating Gene Expression with Summary Association Statistics to Identify Genes Associated with 30 Complex Traits. American Journal of Human Genetics. PMID 28238358 DOI: 10.1016/J.Ajhg.2017.01.031 |
0.418 |
|
| 2017 |
Chen M, Gusev A, Loda M, Mucci LA, Stampfer MJ, Kraft P, Penney KL. Abstract 1321: Transcriptome-wide association study of prostate cancer risk Cancer Research. 77: 1321-1321. DOI: 10.1158/1538-7445.Am2017-1321 |
0.33 |
|
| 2016 |
Traglia M, Bseiso D, Gusev A, Adviento B, Park DS, Mefford JA, Zaitlen N, Weiss LA. Genetic Mechanisms Leading to Sex Differences Across Common Diseases and Anthropometric Traits. Genetics. PMID 27974502 DOI: 10.1534/Genetics.116.193623 |
0.386 |
|
| 2016 |
Lindström S, Ablorh A, Chapman B, Gusev A, Chen G, Turman C, Eliassen AH, Price AL, Henderson BE, Le Marchand L, Hofmann O, Haiman CA, Kraft P. Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities. Breast Cancer Research : Bcr. 18: 109. PMID 27814745 DOI: 10.1186/S13058-016-0772-7 |
0.355 |
|
| 2016 |
Chuang LS, Villaverde N, Hui KY, Mortha A, Rahman A, Levine AP, Haritunians T, Ng SM, Zhang W, Hsu NY, Facey JA, Luong T, Fernandez-Hernandez H, Li D, Rivas M, ... ... Gusev A, et al. A Frameshift in CSF2RB Predominant Among Ashkenazi Jews Increases Risk for Crohn's Disease and Reduces Monocyte Signaling via GMCSF. Gastroenterology. PMID 27377463 DOI: 10.1053/J.Gastro.2016.06.045 |
0.59 |
|
| 2016 |
Gusev A, Shi H, Kichaev G, Pomerantz M, Li F, Long HW, Ingles SA, Kittles RA, Strom SS, Rybicki BA, Nemesure B, Isaacs WB, Zheng W, Pettaway CA, Yeboah ED, et al. Atlas of prostate cancer heritability in European and African-American men pinpoints tissue-specific regulation. Nature Communications. 7: 10979. PMID 27052111 DOI: 10.1038/Ncomms10979 |
0.368 |
|
| 2016 |
Gusev A, Ko A, Shi H, Bhatia G, Chung W, Penninx BW, Jansen R, de Geus EJ, Boomsma DI, Wright FA, Sullivan PF, Nikkola E, Alvarez M, Civelek M, Lusis AJ, et al. Integrative approaches for large-scale transcriptome-wide association studies. Nature Genetics. PMID 26854917 DOI: 10.1038/Ng.3506 |
0.402 |
|
| 2015 |
Palamara PF, Francioli LC, Wilton PR, Genovese G, Gusev A, Finucane HK, Sankararaman S, Sunyaev SR, de Bakker PI, Wakeley J, Pe'er I, Price AL. Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates. American Journal of Human Genetics. PMID 26581902 DOI: 10.1016/J.Ajhg.2015.10.006 |
0.744 |
|
| 2015 |
Loh PR, Bhatia G, Gusev A, Finucane HK, Bulik-Sullivan BK, Pollack SJ, de Candia TR, Lee SH, Wray NR, Kendler KS, O'Donovan MC, Neale BM, Patterson N, Price AL. Contrasting genetic architectures of schizophrenia and other complex diseases using fast variance-components analysis. Nature Genetics. PMID 26523775 DOI: 10.1038/Ng.3431 |
0.378 |
|
| 2015 |
Aschard H, Gusev A, Brown R, Pasaniuc B. Leveraging local ancestry to detect gene-gene interactions in genome-wide data. Bmc Genetics. 16: 124. PMID 26498930 DOI: 10.1186/S12863-015-0283-Z |
0.388 |
|
| 2015 |
Vilhjálmsson BJ, Yang J, Finucane HK, Gusev A, Lindström S, Ripke S, Genovese G, Loh PR, Bhatia G, Do R, Hayeck T, Won HH, Kathiresan S, et al. Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores. American Journal of Human Genetics. 97: 576-592. PMID 26430803 DOI: 10.1016/J.Ajhg.2015.09.001 |
0.319 |
|
| 2015 |
Finucane HK, Bulik-Sullivan B, Gusev A, Trynka G, Reshef Y, Loh PR, Anttila V, Xu H, Zang C, Farh K, Ripke S, Day FR, et al. Partitioning heritability by functional annotation using genome-wide association summary statistics. Nature Genetics. PMID 26414678 DOI: 10.1038/Ng.3404 |
0.415 |
|
| 2015 |
Bulik-Sullivan B, Finucane HK, Anttila V, Gusev A, Day FR, Loh PR, Duncan L, Perry JR, Patterson N, Robinson EB, Daly MJ, Price AL, et al. An atlas of genetic correlations across human diseases and traits. Nature Genetics. PMID 26414676 DOI: 10.1038/Ng.3406 |
0.416 |
|
| 2015 |
Lee SH, Byrne EM, Hultman CM, Kähler A, Vinkhuyzen AA, Ripke S, Andreassen OA, Frisell T, Gusev A, Hu X, Karlsson R, Mantzioris VX, McGrath JJ, Mehta D, Stahl EA, et al. New data and an old puzzle: the negative association between schizophrenia and rheumatoid arthritis. International Journal of Epidemiology. PMID 26286434 DOI: 10.1093/Ije/Dyv136 |
0.32 |
|
| 2015 |
Hayeck TJ, Zaitlen NA, Loh PR, Vilhjalmsson B, Pollack S, Gusev A, Yang J, Chen GB, Goddard ME, Visscher PM, Patterson N, Price AL. Mixed model with correction for case-control ascertainment increases association power. American Journal of Human Genetics. 96: 720-30. PMID 25892111 DOI: 10.1016/J.Ajhg.2015.03.004 |
0.321 |
|
| 2014 |
Gusev A, Lee SH, Trynka G, Finucane H, Vilhjálmsson BJ, Xu H, Zang C, Ripke S, Bulik-Sullivan B, Stahl E, Kähler AK, Hultman CM, Purcell SM, et al. Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases. American Journal of Human Genetics. 95: 535-52. PMID 25439723 DOI: 10.1016/J.Ajhg.2014.10.004 |
0.428 |
|
| 2014 |
Pasaniuc B, Zaitlen N, Shi H, Bhatia G, Gusev A, Pickrell J, Hirschhorn J, Strachan DP, Patterson N, Price AL. Fast and accurate imputation of summary statistics enhances evidence of functional enrichment. Bioinformatics (Oxford, England). 30: 2906-14. PMID 24990607 DOI: 10.1093/Bioinformatics/Btu416 |
0.403 |
|
| 2014 |
Vacic V, Ozelius LJ, Clark LN, Bar-Shira A, Gana-Weisz M, Gurevich T, Gusev A, Kedmi M, Kenny EE, Liu X, Mejia-Santana H, Mirelman A, Raymond D, Saunders-Pullman R, Desnick RJ, et al. Genome-wide mapping of IBD segments in an Ashkenazi PD cohort identifies associated haplotypes. Human Molecular Genetics. 23: 4693-702. PMID 24842889 DOI: 10.1093/Hmg/Ddu158 |
0.643 |
|
| 2013 |
Gusev A, Bhatia G, Zaitlen N, Vilhjalmsson BJ, Diogo D, Stahl EA, Gregersen PK, Worthington J, Klareskog L, Raychaudhuri S, Plenge RM, Pasaniuc B, Price AL. Quantifying missing heritability at known GWAS loci. Plos Genetics. 9: e1003993. PMID 24385918 DOI: 10.1371/Journal.Pgen.1003993 |
0.387 |
|
| 2013 |
Zhang W, Hui KY, Gusev A, Warner N, Ng SM, Ferguson J, Choi M, Burberry A, Abraham C, Mayer L, Desnick RJ, Cardinale CJ, Hakonarson H, Waterman M, Chowers Y, et al. Extended haplotype association study in Crohn's disease identifies a novel, Ashkenazi Jewish-specific missense mutation in the NF-κB pathway gene, HEATR3. Genes and Immunity. 14: 310-6. PMID 23615072 DOI: 10.1038/Gene.2013.19 |
0.408 |
|
| 2012 |
Zhuang Z, Gusev A, Cho J, Pe'er I. Detecting identity by descent and homozygosity mapping in whole-exome sequencing data. Plos One. 7: e47618. PMID 23071825 DOI: 10.1371/Journal.Pone.0047618 |
0.656 |
|
| 2012 |
Gusev A, Shah MJ, Kenny EE, Ramachandran A, Lowe JK, Salit J, Lee CC, Levandowsky EC, Weaver TN, Doan QC, Peckham HE, McLaughlin SF, Lyons MR, Sheth VN, Stoffel M, et al. Low-pass genome-wide sequencing and variant inference using identity-by-descent in an isolated human population. Genetics. 190: 679-89. PMID 22135348 DOI: 10.1534/Genetics.111.134874 |
0.446 |
|
| 2012 |
Gusev A, Palamara PF, Aponte G, Zhuang Z, Darvasi A, Gregersen P, Pe'er I. The architecture of long-range haplotypes shared within and across populations. Molecular Biology and Evolution. 29: 473-86. PMID 21984068 DOI: 10.1093/Molbev/Msr133 |
0.758 |
|
| 2012 |
Hui K, Zhang W, Gusev A, Pe'er I, Peter I, Cho JH. Tu1903 Integration of Population-Specific Novel and Established Genetic Variation for the Identification of Crohn's Disease-Associated Loci in Ashkenazi Jewish Individuals Gastroenterology. 142: S-873-S-874. DOI: 10.1016/S0016-5085(12)63390-3 |
0.64 |
|
| 2011 |
Gusev A, Kenny EE, Lowe JK, Salit J, Saxena R, Kathiresan S, Altshuler DM, Friedman JM, Breslow JL, Pe'er I. DASH: a method for identical-by-descent haplotype mapping uncovers association with recent variation. American Journal of Human Genetics. 88: 706-17. PMID 21620352 DOI: 10.1016/J.Ajhg.2011.04.023 |
0.683 |
|
| 2011 |
Setty MN, Gusev A, Pe'er I. HLA type inference via haplotypes identical by descent. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 483-93. PMID 21385049 DOI: 10.1089/Cmb.2010.0258 |
0.614 |
|
| 2011 |
Kenny EE, Kim M, Gusev A, Lowe JK, Salit J, Smith JG, Kovvali S, Kang HM, Newton-Cheh C, Daly MJ, Stoffel M, Altshuler DM, Friedman JM, Eskin E, Breslow JL, et al. Increased power of mixed models facilitates association mapping of 10 loci for metabolic traits in an isolated population. Human Molecular Genetics. 20: 827-39. PMID 21118897 DOI: 10.1093/Hmg/Ddq510 |
0.67 |
|
| 2009 |
Kenny EE, Gusev A, Riegel K, Lütjohann D, Lowe JK, Salit J, Maller JB, Stoffel M, Daly MJ, Altshuler DM, Friedman JM, Breslow JL, Pe'er I, Sehayek E. Systematic haplotype analysis resolves a complex plasma plant sterol locus on the Micronesian Island of Kosrae. Proceedings of the National Academy of Sciences of the United States of America. 106: 13886-91. PMID 19667188 DOI: 10.1073/Pnas.0907336106 |
0.647 |
|
| 2009 |
Gusev A, Lowe JK, Stoffel M, Daly MJ, Altshuler D, Breslow JL, Friedman JM, Pe'er I. Whole population, genome-wide mapping of hidden relatedness. Genome Research. 19: 318-26. PMID 18971310 DOI: 10.1101/Gr.081398.108 |
0.661 |
|
| 2008 |
Gusev A, Măndoiu II, Paşaniuc B. Highly scalable genotype phasing by entropy minimization. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 5: 252-61. PMID 18451434 DOI: 10.1109/Tcbb.2007.70223 |
0.403 |
|
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