Robert Wayne - Publications

Ecology and Evolutionary Biology University of California, Los Angeles, Los Angeles, CA 
Application of molecular genetic techniques to questions in systematics, population genetics, sociobiology and conservation

143 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Hendricks SA, Schweizer RM, Harrigan RJ, Pollinger JP, Paquet PC, Darimont CT, Adams JR, Waits LP, vonHoldt BM, Hohenlohe PA, Wayne RK. Natural re-colonization and admixture of wolves (Canis lupus) in the US Pacific Northwest: challenges for the protection and management of rare and endangered taxa. Heredity. PMID 29880893 DOI: 10.1038/s41437-018-0094-x  0.76
2018 Pilot M, Greco C, vonHoldt BM, Randi E, Jędrzejewski W, Sidorovich VE, Konopiński MK, Ostrander EA, Wayne RK. Widespread, long-term admixture between grey wolves and domestic dogs across Eurasia and its implications for the conservation status of hybrids. Evolutionary Applications. 11: 662-680. PMID 29875809 DOI: 10.1111/eva.12595  0.76
2018 Schweizer RM, Durvasula A, Smith J, Vohr SH, Stahler DR, Galaverni M, Thalmann O, Smith DW, Randi E, Ostrander EA, Green RE, Lohmueller KE, Novembre J, Wayne RK. Natural Selection and Origin of a Melanistic Allele in North American Gray Wolves. Molecular Biology and Evolution. 35: 1190-1209. PMID 29688543 DOI: 10.1093/molbev/msy031  0.44
2017 Serres-Armero A, Povolotskaya IS, Quilez J, Ramirez O, Santpere G, Kuderna LFK, Hernandez-Rodriguez J, Fernandez-Callejo M, Gomez-Sanchez D, Freedman AH, Fan Z, Novembre J, Navarro A, Boyko A, Wayne R, et al. Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing. Bmc Genomics. 18: 977. PMID 29258433 DOI: 10.1186/s12864-017-4318-x  0.48
2017 vonHoldt B, Fan Z, Ortega-Del Vecchyo D, Wayne RK. EPAS1 variants in high altitude Tibetan wolves were selectively introgressed into highland dogs. Peerj. 5: e3522. PMID 28717592 DOI: 10.7717/peerj.3522  0.44
2017 Thomassen HA, Harrigan RJ, Semple Delaney K, Riley SPD, Serieys LEK, Pease K, Wayne RK, Smith TB. Determining the drivers of population structure in a highly urbanized landscape to inform conservation planning. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 28631859 DOI: 10.1111/cobi.12969  0.64
2017 vonHoldt BM, Cahill JA, Gronau I, Shapiro B, Wall J, Wayne RK. Response to Hohenlohe et al. Science Advances. 3: e1701233. PMID 28630935 DOI: 10.1126/sciadv.1701233  0.76
2016 vonHoldt BM, Cahill JA, Fan Z, Gronau I, Robinson J, Pollinger JP, Shapiro B, Wall J, Wayne RK. Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf. Science Advances. 2: e1501714. PMID 29713682 DOI: 10.1126/sciadv.1501714  0.76
2016 Johnston RA, Paxton KL, Moore FR, Wayne RK, Smith TB. Seasonal gene expression in a migratory songbird. Molecular Ecology. PMID 27747949 DOI: 10.1111/mec.13879  0.64
2016 Tchaicka L, Freitas TR, Bager A, Vidal SL, Lucherini M, Iriarte A, Novaro A, Geffen E, Garcez FS, Johnson WE, Wayne RK, Eizirik E. Molecular assessment of the phylogeny and biogeography of a recently diversified endemic group of South American canids (Mammalia: Carnivora: Canidae). Genetics and Molecular Biology. PMID 27560989 DOI: 10.1590/1678-4685-GMB-2015-0189  0.56
2016 Tchaicka L, Freitas TR, Bager A, Vidal SL, Lucherini M, Iriarte A, Novaro A, Geffen E, Garcez FS, Johnson WE, Wayne RK, Eizirik E. Molecular assessment of the phylogeny and biogeography of a recently diversified endemic group of South American canids (Mammalia: Carnivora: Canidae). Genetics and Molecular Biology. 0. PMID 27459260 DOI: 10.1590/1678-4685-GMB-2015-0189  1
2016 Charruau P, Johnston RA, Stahler DR, Lea A, Snyder-Mackler N, Smith DW, vonHoldt BM, Cole SW, Tung J, Wayne RK. Pervasive Effects of Aging on Gene Expression in Wild Wolves. Molecular Biology and Evolution. PMID 27189566 DOI: 10.1093/molbev/msw072  1
2016 Janowitz Koch I, Clark MM, Thompson MJ, Deere-Machemer KA, Wang J, Duarte L, Gnanadesikan GE, McCoy EL, Rubbi L, Stahler DR, Pellegrini M, Ostrander EA, Wayne RK, Sinsheimer JS, vonHoldt BM. The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves. Molecular Ecology. 25: 1838-55. PMID 27112634 DOI: 10.1111/mec.13480  0.76
2016 Robinson JA, Ortega-Del Vecchyo D, Fan Z, Kim BY, vonHoldt BM, Marsden CD, Lohmueller KE, Wayne RK. Genomic Flatlining in the Endangered Island Fox. Current Biology : Cb. PMID 27112291 DOI: 10.1016/j.cub.2016.02.062  1
2016 von Holdt BM, Kays RW, Pollinger JP, Wayne RK. Admixture mapping identifies introgressed genomic regions in North American canids. Molecular Ecology. PMID 27106273 DOI: 10.1111/mec.13667  1
2016 Wayne RK, Shaffer HB. Hybridization and Endangered Species Protection in the Molecular Era. Molecular Ecology. PMID 27064931 DOI: 10.1111/mec.13642  1
2016 Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, Davis BW, Gronau I, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vilà C, ... ... Wayne RK, et al. Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs. Plos Genetics. 12: e1005851. PMID 26943675 DOI: 10.1371/journal.pgen.1005851  0.48
2016 Janowitz Koch I, Clark MM, Thompson MJ, Deere-Machemer KA, Wang J, Duarte L, Gnanadesikan GE, Mccoy EL, Rubbi L, Stahler DR, Pellegrini M, Ostrander EA, Wayne RK, Sinsheimer JS, vonHoldt BM. The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves Molecular Ecology. DOI: 10.1111/mec.13480  0.76
2016 Hendricks SA, Sesink Clee PR, Harrigan RJ, Pollinger JP, Freedman AH, Callas R, Figura PJ, Wayne RK. Re-defining historical geographic range in species with sparse records: Implications for the Mexican wolf reintroduction program Biological Conservation. 194: 48-57. DOI: 10.1016/j.biocon.2015.11.027  1
2015 Marsden CD, Ortega-Del Vecchyo D, O'Brien DP, Taylor JF, Ramirez O, Vilà C, Marques-Bonet T, Schnabel RD, Wayne RK, Lohmueller KE. Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs. Proceedings of the National Academy of Sciences of the United States of America. PMID 26699508 DOI: 10.1073/pnas.1512501113  1
2015 Fan Z, Silva P, Gronau I, Wang S, Armero AS, Schweizer RM, Ramirez O, Pollinger J, Galaverni M, Ortega Del-Vecchyo D, Du L, Zhang W, Zhang Z, Xing J, Vilá C, ... ... Wayne RK, et al. Worldwide patterns of genomic variation and admixture in gray wolves. Genome Research. PMID 26680994 DOI: 10.1101/gr.197517.115  1
2015 Schweizer RM, Robinson J, Harrigan R, Silva P, Galverni M, Musiani M, Green RE, Novembre J, Wayne RK. Targeted capture and resequencing of 1040 genes reveal environmentally driven functional variation in gray wolves. Molecular Ecology. PMID 26562361 DOI: 10.1111/mec.13467  1
2015 Schweizer RM, vonHoldt BM, Harrigan R, Knowles JC, Musiani M, Coltman D, Novembre J, Wayne RK. Genetic subdivision and candidate genes under selection in North American gray wolves. Molecular Ecology. PMID 26333947 DOI: 10.1111/mec.13364  1
2015 Koepfli KP, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, ... ... Wayne RK, et al. Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species. Current Biology : Cb. 25: 2158-65. PMID 26234211 DOI: 10.1016/j.cub.2015.06.060  1
2015 Decker B, Davis BW, Rimbault M, Long AH, Karlins E, Parker HG, Jagannathan V, Reiman R, Drögemüller C, Corneveaux JJ, Chapman ES, Trent JM, Leeb T, Huentelman MJ, Wayne RK, et al. Comparison against 186 canid whole genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor. Genome Research. PMID 26232412 DOI: 10.1101/gr.190314.115  1
2015 Fredrickson RJ, Hedrick PW, Wayne RK, vonHoldt BM, Phillips MK. Mexican Wolves Are a Valid Subspecies and an Appropriate Conservation Target The Journal of Heredity. 106: 415-416. PMID 25964445 DOI: 10.1093/jhered/esv028  1
2015 Kapheim KM, Nonacs P, Smith AR, Wayne RK, Wcislo WT. Kinship, parental manipulation and evolutionary origins of eusociality. Proceedings. Biological Sciences / the Royal Society. 282: 20142886. PMID 25694620 DOI: 10.1098/rspb.2014.2886  1
2015 Serieys LE, Lea A, Pollinger JP, Riley SP, Wayne RK. Disease and freeways drive genetic change in urban bobcat populations. Evolutionary Applications. 8: 75-92. PMID 25667604 DOI: 10.1111/eva.12226  1
2015 Lonsinger RC, Schweizer RM, Pollinger JP, Wayne RK, Roemer GW. Fine-scale genetic structure of the ringtail (Bassariscus astutus) in a Sky Island mountain range Journal of Mammalogy. 96: 257-268. DOI: 10.1093/jmammal/gyv050  0.4
2015 Hendricks SA, Charruau PC, Pollinger JP, Callas R, Figura PJ, Wayne RK. Polyphyletic ancestry of historic gray wolves inhabiting U.S. Pacific states Conservation Genetics. 16: 759-764. DOI: 10.1007/s10592-014-0687-8  0.4
2014 Riley SP, Serieys LE, Pollinger JP, Sikich JA, Dalbeck L, Wayne RK, Ernest HB. Individual behaviors dominate the dynamics of an urban mountain lion population isolated by roads. Current Biology : Cb. 24: 1989-94. PMID 25131676 DOI: 10.1016/j.cub.2014.07.029  1
2014 Zhang W, Fan Z, Han E, Hou R, Zhang L, Galaverni M, Huang J, Liu H, Silva P, Li P, Pollinger JP, Du L, Zhang X, Yue B, Wayne RK, et al. Hypoxia adaptations in the grey wolf (Canis lupus chanco) from Qinghai-Tibet Plateau. Plos Genetics. 10: e1004466. PMID 25078401 DOI: 10.1371/journal.pgen.1004466  1
2014 Ramirez O, Olalde I, Berglund J, Lorente-Galdos B, Hernandez-Rodriguez J, Quilez J, Webster MT, Wayne RK, Lalueza-Fox C, Vilà C, Marques-Bonet T. Analysis of structural diversity in wolf-like canids reveals post-domestication variants. Bmc Genomics. 15: 465. PMID 24923435 DOI: 10.1186/1471-2164-15-465  1
2014 Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, Han E, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Beale H, Ramirez O, Hormozdiari F, Alkan C, Vilà C, ... ... Wayne RK, et al. Genome sequencing highlights the dynamic early history of dogs. Plos Genetics. 10: e1004016. PMID 24453982 DOI: 10.1371/journal.pgen.1004016  1
2014 Price SL, Powell S, Kronauer DJ, Tran LA, Pierce NE, Wayne RK. Renewed diversification is associated with new ecological opportunity in the Neotropical turtle ants. Journal of Evolutionary Biology. 27: 242-58. PMID 24417316 DOI: 10.1111/jeb.12300  1
2014 Pilot M, Greco C, vonHoldt BM, Jędrzejewska B, Randi E, Jędrzejewski W, Sidorovich VE, Ostrander EA, Wayne RK. Genome-wide signatures of population bottlenecks and diversifying selection in European wolves. Heredity. 112: 428-42. PMID 24346500 DOI: 10.1038/hdy.2013.122  1
2014 Pease KM, Wayne RK. Divergent responses of exposed and naive Pacific tree frog tadpoles to invasive predatory crayfish. Oecologia. 174: 241-52. PMID 24002711 DOI: 10.1007/s00442-013-2745-1  1
2014 Quan AS, Pease KM, Breinholt JW, Wayne RK. Origins of the invasive red swamp crayfish (Procambarus clarkii) in the Santa Monica Mountains Aquatic Invasions. 9: 211-219. DOI: 10.3391/ai.2014.9.2.10  1
2013 Thalmann O, Shapiro B, Cui P, Schuenemann VJ, Sawyer SK, Greenfield DL, Germonpré MB, Sablin MV, López-Giráldez F, Domingo-Roura X, Napierala H, Uerpmann HP, Loponte DM, Acosta AA, Giemsch L, ... ... Wayne RK, et al. Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs. Science (New York, N.Y.). 342: 871-4. PMID 24233726 DOI: 10.1126/science.1243650  1
2013 Roy M, Kim N, Kim K, Chung WH, Achawanantakun R, Sun Y, Wayne R. Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 24: 484-99. PMID 24202129 DOI: 10.1007/s00335-013-9480-0  1
2013 Rimbault M, Beale HC, Schoenebeck JJ, Hoopes BC, Allen JJ, Kilroy-Glynn P, Wayne RK, Sutter NB, Ostrander EA. Derived variants at six genes explain nearly half of size reduction in dog breeds. Genome Research. 23: 1985-95. PMID 24026177 DOI: 10.1101/gr.157339.113  1
2013 Li Y, Vonholdt BM, Reynolds A, Boyko AR, Wayne RK, Wu DD, Zhang YP. Artificial selection on brain-expressed genes during the domestication of dog. Molecular Biology and Evolution. 30: 1867-76. PMID 23660689 DOI: 10.1093/molbev/mst088  1
2013 Fuller TL, Thomassen HA, Peralvo M, Buermann W, Milá B, Kieswetter CM, Jarrín-V P, Devitt SE, Mason E, Schweizer RM, Schlunegger J, Chan J, Wang O, Schneider CJ, Pollinger JP, ... ... Wayne RK, et al. Intraspecific morphological and genetic variation of common species predicts ranges of threatened ones. Proceedings. Biological Sciences / the Royal Society. 280: 20130423. PMID 23595273 DOI: 10.1098/rspb.2013.0423  1
2013 Karyadi DM, Karlins E, Decker B, vonHoldt BM, Carpintero-Ramirez G, Parker HG, Wayne RK, Ostrander EA. A copy number variant at the KITLG locus likely confers risk for canine squamous cell carcinoma of the digit. Plos Genetics. 9: e1003409. PMID 23555311 DOI: 10.1371/journal.pgen.1003409  1
2013 Druzhkova AS, Thalmann O, Trifonov VA, Leonard JA, Vorobieva NV, Ovodov ND, Graphodatsky AS, Wayne RK. Ancient DNA analysis affirms the canid from Altai as a primitive dog. Plos One. 8: e57754. PMID 23483925 DOI: 10.1371/journal.pone.0057754  1
2013 vonHoldt BM, Pollinger JP, Earl DA, Parker HG, Ostrander EA, Wayne RK. Identification of recent hybridization between gray wolves and domesticated dogs by SNP genotyping. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 24: 80-8. PMID 23064780 DOI: 10.1007/s00335-012-9432-0  1
2013 Stahler DR, MacNulty DR, Wayne RK, vonHoldt B, Smith DW. The adaptive value of morphological, behavioural and life-history traits in reproductive female wolves. The Journal of Animal Ecology. 82: 222-34. PMID 23043440 DOI: 10.1111/j.1365-2656.2012.02039.x  1
2013 Marsden CD, Verberkmoes H, Thomas R, Wayne RK, Mable BK. Pedigrees, MHC and microsatellites: An integrated approach for genetic management of captive African wild dogs (Lycaon pictus) Conservation Genetics. 14: 171-183. DOI: 10.1007/s10592-012-0440-0  1
2013 Kapheim KM, Smith AR, Nonacs P, Wcislo WT, Wayne RK. Foundress polyphenism and the origins of eusociality in a facultatively eusocial sweat bee, Megalopta genalis (Halictidae) Behavioral Ecology and Sociobiology. 67: 331-340. DOI: 10.1007/s00265-012-1453-x  1
2012 Schoenebeck JJ, Hutchinson SA, Byers A, Beale HC, Carrington B, Faden DL, Rimbault M, Decker B, Kidd JM, Sood R, Boyko AR, Fondon JW, Wayne RK, Bustamante CD, Ciruna B, et al. Variation of BMP3 contributes to dog breed skull diversity. Plos Genetics. 8: e1002849. PMID 22876193 DOI: 10.1371/journal.pgen.1002849  1
2012 Schwochow D, Serieys LE, Wayne RK, Thalmann O. Efficient recovery of whole blood RNA--a comparison of commercial RNA extraction protocols for high-throughput applications in wildlife species. Bmc Biotechnology. 12: 33. PMID 22738215 DOI: 10.1186/1472-6750-12-33  1
2012 MacDonald GM, Beilman DW, Kuzmin YV, Orlova LA, Kremenetski KV, Shapiro B, Wayne RK, Van Valkenburgh B. Pattern of extinction of the woolly mammoth in Beringia. Nature Communications. 3: 893. PMID 22692536 DOI: 10.1038/ncomms1881  1
2012 Koblmüller S, Wayne RK, Leonard JA. Impact of Quaternary climatic changes and interspecific competition on the demographic history of a highly mobile generalist carnivore, the coyote. Biology Letters. 8: 644-7. PMID 22491760 DOI: 10.1098/rsbl.2012.0162  1
2012 Marsden CD, Woodroffe R, Mills MG, McNutt JW, Creel S, Groom R, Emmanuel M, Cleaveland S, Kat P, Rasmussen GS, Ginsberg J, Lines R, André JM, Begg C, Wayne RK, et al. Spatial and temporal patterns of neutral and adaptive genetic variation in the endangered African wild dog (Lycaon pictus). Molecular Ecology. 21: 1379-93. PMID 22320891 DOI: 10.1111/j.1365-294X.2012.05477.x  1
2012 Wayne RK, vonHoldt BM. Evolutionary genomics of dog domestication. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 3-18. PMID 22270221 DOI: 10.1007/s00335-011-9386-7  1
2012 Olson LE, Blumstein DT, Pollinger JR, Wayne RK. No evidence of inbreeding avoidance despite demonstrated survival costs in a polygynous rodent. Molecular Ecology. 21: 562-71. PMID 22145620 DOI: 10.1111/j.1365-294X.2011.05389.x  1
2012 Amorim IR, Emerson BC, Borges PAV, Wayne RK. Phylogeography and molecular phylogeny of Macaronesian island Tarphius (Coleoptera: Zopheridae): Why are there so few species in the Azores? Journal of Biogeography. 39: 1583-1595. DOI: 10.1111/j.1365-2699.2012.02721.x  1
2012 vonHoldt BM, Gray MM, Wayne RK. Genome-wide approaches for the study of dog domestication Biodiversity in Agriculture: Domestication, Evolution, and Sustainability. 275-298. DOI: 10.1017/CBO9781139019514.015  1
2012 Oster M, Pollinger JP, Stahler DR, Wayne RK. Optimization of RNA isolation and leukocyte viability in canid RNA expression studies Conservation Genetics Resources. 4: 27-29. DOI: 10.1007/s12686-011-9465-9  1
2012 Marsden CD, Wayne RK, Mable BK. Inferring the ancestry of African wild dogs that returned to the Serengeti-Mara Conservation Genetics. 13: 525-533. DOI: 10.1007/s10592-011-0304-z  1
2012 de Ita AO, Oyama K, Smith TB, Wayne RK, Milá B. Genetic evidence for recent range fragmentation and severely restricted dispersal in the critically endangered Sierra Madre Sparrow, Xenospiza baileyi Conservation Genetics. 13: 283-291. DOI: 10.1007/s10592-011-0283-0  1
2011 Thomassen HA, Fuller T, Buermann W, Milá B, Kieswetter CM, Jarrín-V P, Cameron SE, Mason E, Schweizer R, Schlunegger J, Chan J, Wang O, Peralvo M, Schneider CJ, Graham CH, ... ... Wayne RK, et al. Mapping evolutionary process: a multi-taxa approach to conservation prioritization. Evolutionary Applications. 4: 397-413. PMID 25567981 DOI: 10.1111/j.1752-4571.2010.00172.x  1
2011 Coulson T, MacNulty DR, Stahler DR, vonHoldt B, Wayne RK, Smith DW. Modeling effects of environmental change on wolf population dynamics, trait evolution, and life history. Science (New York, N.Y.). 334: 1275-8. PMID 22144626 DOI: 10.1126/science.1209441  1
2011 Geffen E, Kam M, Hefner R, Hersteinsson P, Angerbjörn A, Dalèn L, Fuglei E, Norèn K, Adams JR, Vucetich J, Meier TJ, Mech LD, Vonholdt BM, Stahler DR, Wayne RK. Kin encounter rate and inbreeding avoidance in canids. Molecular Ecology. 20: 5348-58. PMID 22077191 DOI: 10.1111/j.1365-294X.2011.05358.x  1
2011 Lorenzen ED, Nogués-Bravo D, Orlando L, Weinstock J, Binladen J, Marske KA, Ugan A, Borregaard MK, Gilbert MT, Nielsen R, Ho SY, Goebel T, Graf KE, Byers D, Stenderup JT, ... ... Wayne RK, et al. Species-specific responses of Late Quaternary megafauna to climate and humans. Nature. 479: 359-64. PMID 22048313 DOI: 10.1038/nature10574  1
2011 Becker SE, Thomas R, Trifonov VA, Wayne RK, Graphodatsky AS, Breen M. Anchoring the dog to its relatives reveals new evolutionary breakpoints across 11 species of the Canidae and provides new clues for the role of B chromosomes. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 19: 685-708. PMID 21947954 DOI: 10.1007/s10577-011-9233-4  1
2011 vonHoldt BM, Pollinger JP, Earl DA, Knowles JC, Boyko AR, Parker H, Geffen E, Pilot M, Jedrzejewski W, Jedrzejewska B, Sidorovich V, Greco C, Randi E, Musiani M, Kays R, ... ... Wayne RK, et al. A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Research. 21: 1294-305. PMID 21566151 DOI: 10.1101/gr.116301.110  1
2011 Wayne R, Hedrick P. Genetics and wolf conservation in the American West: Lessons and challenges Heredity. 107: 16-19. PMID 21119704 DOI: 10.1038/hdy.2010.147  1
2011 Smith TB, Thomassen HA, Freedman AH, Sehgal RNM, Buermann W, Saatchi S, Pollinger J, Milá B, Pires D, Valkiunas G, Wayne RK. Patterns of divergence in the olive sunbird Cyanomitra olivacea (Aves: Nectariniidae) across the African rainforest-savanna ecotone Biological Journal of the Linnean Society. 103: 821-835. DOI: 10.1111/j.1095-8312.2011.01674.x  1
2011 Milá B, Toews DPL, Smith TB, Wayne RK. A cryptic contact zone between divergent mitochondrial DNA lineages in southwestern North America supports past introgressive hybridization in the yellow-rumped warbler complex (Aves: Dendroica coronata) Biological Journal of the Linnean Society. 103: 696-706. DOI: 10.1111/j.1095-8312.2011.01661.x  1
2010 Thomassen HA, Buermann W, Milá B, Graham CH, Cameron SE, Schneider CJ, Pollinger JP, Saatchi S, Wayne RK, Smith TB. Modeling environmentally associated morphological and genetic variation in a rainforest bird, and its application to conservation prioritization. Evolutionary Applications. 3: 1-16. PMID 25567899 DOI: 10.1111/j.1752-4571.2009.00093.x  1
2010 Van Valkenburgh B, Wayne RK. Carnivores. Current Biology : Cb. 20: R915-9. PMID 21056828 DOI: 10.1016/j.cub.2010.09.013  1
2010 Gray MM, Wayne RK. Response to klütsch and crapon de caprona. Bmc Biology. 8: 120. PMID 20825654 DOI: 10.1186/1741-7007-8-120  1
2010 vonHoldt BM, Stahler DR, Bangs EE, Smith DW, Jimenez MD, Mack CM, Niemeyer CC, Pollinger JP, Wayne RK. A novel assessment of population structure and gene flow in grey wolf populations of the Northern Rocky Mountains of the United States. Molecular Ecology. 19: 4412-27. PMID 20723068 DOI: 10.1111/j.1365-294X.2010.04769.x  1
2010 Thomassen HA, Cheviron ZA, Freedman AH, Harrigan RJ, Wayne RK, Smith TB. Spatial modelling and landscape-level approaches for visualizing intra-specific variation. Molecular Ecology. 19: 3532-48. PMID 20723053 DOI: 10.1111/j.1365-294X.2010.04737.x  1
2010 Boyko AR, Quignon P, Li L, Schoenebeck JJ, Degenhardt JD, Lohmueller KE, Zhao K, Brisbin A, Parker HG, vonHoldt BM, Cargill M, Auton A, Reynolds A, Elkahloun AG, Castelhano M, ... ... Wayne RK, et al. A simple genetic architecture underlies morphological variation in dogs. Plos Biology. 8: e1000451. PMID 20711490 DOI: 10.1371/journal.pbio.1000451  1
2010 Vonholdt BM, Pollinger JP, Lohmueller KE, Han E, Parker HG, Quignon P, Degenhardt JD, Boyko AR, Earl DA, Auton A, Reynolds A, Bryc K, Brisbin A, Knowles JC, Mosher DS, ... ... Wayne RK, et al. Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication. Nature. 464: 898-902. PMID 20237475 DOI: 10.1038/nature08837  1
2010 Gray MM, Sutter NB, Ostrander EA, Wayne RK. The IGF1 small dog haplotype is derived from Middle Eastern grey wolves. Bmc Biology. 8: 16. PMID 20181231 DOI: 10.1186/1741-7007-8-16  1
2010 Eizirik E, Murphy WJ, Koepfli KP, Johnson WE, Dragoo JW, Wayne RK, O'Brien SJ. Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences. Molecular Phylogenetics and Evolution. 56: 49-63. PMID 20138220 DOI: 10.1016/j.ympev.2010.01.033  1
2010 Wright HWY, Gray MM, Wayne RK, Woodroffe RB. Mating tactics and paternity in a socially monogamous canid, the bat-eared fox (Otocyon megalotis) Journal of Mammalogy. 91: 437-447. DOI: 10.1644/09-MAMM-A-046.1  1
2010 Gray MM, Sutter NB, Ostrander EA, Wayne RK. The IGF1 small dog haplotype is derived from Middle Eastern gray wolves Bmc Biology. 8. DOI: 10.1186/1741-7007-8-118  1
2010 Randall DA, Pollinger JP, Argaw K, Macdonald DW, Wayne RK. Fine-scale genetic structure in Ethiopian wolves imposed by sociality, migration, and population bottlenecks Conservation Genetics. 11: 89-101. DOI: 10.1007/s10592-009-0005-z  1
2009 Kapheim KM, Pollinger JP, Wcislo WT, Wayne RK. Characterization of 12 polymorphic microsatellite markers for a facultatively eusocial sweat bee (Megalopta genalis). Molecular Ecology Resources. 9: 1527-9. PMID 21564949 DOI: 10.1111/j.1755-0998.2009.02693.x  0.4
2009 Schweizer RM, Roemer GW, Pollinger JP, Wayne RK. Characterization of 15 tetranucleotide microsatellite markers in the ringtail (Bassariscus astutus). Molecular Ecology Resources. 9: 210-2. PMID 21564605 DOI: 10.1111/j.1755-0998.2008.02374.x  1
2009 Slater GJ, Thalmann O, Leonard JA, Schweizer RM, Koepfli KP, Pollinger JP, Rawlence NJ, Austin JJ, Cooper A, Wayne RK. Evolutionary history of the Falklands wolf. Current Biology : Cb. 19: R937-8. PMID 19889366 DOI: 10.1016/j.cub.2009.09.018  1
2009 Cadieu E, Neff MW, Quignon P, Walsh K, Chase K, Parker HG, Vonholdt BM, Rhue A, Boyko A, Byers A, Wong A, Mosher DS, Elkahloun AG, Spady TC, André C, ... ... Wayne RK, et al. Coat variation in the domestic dog is governed by variants in three genes. Science (New York, N.Y.). 326: 150-3. PMID 19713490 DOI: 10.1126/science.1177808  1
2009 Parker HG, VonHoldt BM, Quignon P, Margulies EH, Shao S, Mosher DS, Spady TC, Elkahloun A, Cargill M, Jones PG, Maslen CL, Acland GM, Sutter NB, Kuroki K, Bustamante CD, ... Wayne RK, et al. An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs. Science (New York, N.Y.). 325: 995-8. PMID 19608863 DOI: 10.1126/science.1173275  1
2009 Milá B, Wayne RK, Fitze P, Smith TB. Divergence with gene flow and fine-scale phylogeographical structure in the wedge-billed woodcreeper, Glyphorynchus spirurus, a Neotropical rainforest bird. Molecular Ecology. 18: 2979-95. PMID 19538341 DOI: 10.1111/j.1365-294X.2009.04251.x  1
2009 Koblmüller S, Nord M, Wayne RK, Leonard JA. Origin and status of the Great Lakes wolf. Molecular Ecology. 18: 2313-26. PMID 19366404 DOI: 10.1111/j.1365-294X.2009.04176.x  1
2009 Pease KM, Freedman AH, Pollinger JP, McCormack JE, Buermann W, Rodzen J, Banks J, Meredith E, Bleich VC, Schaefer RJ, Jones K, Wayne RK. Landscape genetics of California mule deer (Odocoileus hemionus): the roles of ecological and historical factors in generating differentiation. Molecular Ecology. 18: 1848-62. PMID 19302356 DOI: 10.1111/j.1365-294X.2009.04112.x  1
2009 Anderson TM, vonHoldt BM, Candille SI, Musiani M, Greco C, Stahler DR, Smith DW, Padhukasahasram B, Randi E, Leonard JA, Bustamante CD, Ostrander EA, Tang H, Wayne RK, Barsh GS. Molecular and evolutionary history of melanism in North American gray wolves. Science (New York, N.Y.). 323: 1339-43. PMID 19197024 DOI: 10.1126/science.1165448  1
2009 Gray MM, Granka JM, Bustamante CD, Sutter NB, Boyko AR, Zhu L, Ostrander EA, Wayne RK. Linkage disequilibrium and demographic history of wild and domestic canids. Genetics. 181: 1493-505. PMID 19189949 DOI: 10.1534/genetics.108.098830  1
2009 Barsh GS, Anderson TM, Vonholdt BM, Candille SI, Musiani M, Stahler DR, Leonard JA, Padhukasahasram B, Randi E, Bustamante CD, Ostrander EA, Tang H, Wayne RK. Response Science. 325: 34. DOI: 10.1126/science.325_34  1
2009 Kapheim KM, Pollinger JP, Wcislo WT, Wayne RK. Characterization of 12 polymorphic microsatellite markers for a facultatively eusocial sweat bee (Megalopta genalis) Molecular Ecology Resources. 9: 1527-1529. DOI: 10.1111/j.1755-0998.2009.02693.x  1
2009 KoblmÜller S, Nord M, Wayne RK, Leonard J. More is better Molecular Ecology. 18: 4994-4996. DOI: 10.1111/j.1365-294X.2009.04432.x  1
2009 Muñoz-Fuentes V, Darimont CT, Wayne RK, Paquet PC, Leonard JA. Ecological factors drive differentiation in wolves from British Columbia Journal of Biogeography. 36: 1516-1531. DOI: 10.1111/j.1365-2699.2008.02067.x  1
2009 Leonard JA, Wayne RK. Invited reply. Wishful thinking: Imagining that the current Great Lakes wolf is the same entity that existed historically Biology Letters. 5: 67-68. DOI: 10.1098/rsbl.2008.0533  1
2009 Haussler D, O'Brien SJ, Ryder OA, Keith Barker F, Clamp M, Crawford AJ, Hanner R, Hanotte O, Johnson WE, McGuire JA, Miller W, Murphy RW, Murphy WJ, Sheldon FH, Sinervo B, ... ... Wayne R, et al. Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species Journal of Heredity. 100: 659-674. DOI: 10.1093/jhered/esp086  1
2008 Koepfli KP, Deere KA, Slater GJ, Begg C, Begg K, Grassman L, Lucherini M, Veron G, Wayne RK. Multigene phylogeny of the Mustelidae: resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation. Bmc Biology. 6: 10. PMID 18275614 DOI: 10.1186/1741-7007-6-10  1
2008 Leonard JA, Wayne RK. Native Great Lakes wolves were not restored. Biology Letters. 4: 95-8. PMID 17956840 DOI: 10.1098/rsbl.2007.0354  1
2008 Vonholdt BM, Stahler DR, Smith DW, Earl DA, Pollinger JP, Wayne RK. The genealogy and genetic viability of reintroduced Yellowstone grey wolves. Molecular Ecology. 17: 252-74. PMID 17877715 DOI: 10.1111/j.1365-294X.2007.03468.x  1
2008 Milá B, Wayne RK, Smith TB. Ecomorphology of migratory and sedentary populations of the yellow-rumped warbler (Dendroica Coronata) Condor. 110: 335-344. DOI: 10.1525/cond.2008.8396  1
2008 Delaney KS, Zafar S, Wayne RK. Genetic divergence and differentiation within the western scrub-jay (aphelocoma Californica) Auk. 125: 839-849. DOI: 10.1525/auk.2008.07088  1
2008 Koepfli KP, Kanchanasaka B, Sasaki H, Jacques H, Louie KDY, Hoai T, Dang NX, Geffen E, Gutleb A, Han SY, Heggberget TM, LaFontaine L, Lee H, Melisch R, Ruiz-Olmo J, ... ... Wayne RK, et al. Establishing the foundation for an applied molecular taxonomy of otters in Southeast Asia Conservation Genetics. 9: 1589-1604. DOI: 10.1007/s10592-007-9498-5  1
2007 Brown DM, Brenneman RA, Koepfli KP, Pollinger JP, Milá B, Georgiadis NJ, Louis EE, Grether GF, Jacobs DK, Wayne RK. Extensive population genetic structure in the giraffe. Bmc Biology. 5: 57. PMID 18154651 DOI: 10.1186/1741-7007-5-57  1
2007 Wayne RK, Ostrander EA. Lessons learned from the dog genome. Trends in Genetics : Tig. 23: 557-67. PMID 17963975 DOI: 10.1016/j.tig.2007.08.013  1
2007 Geffen E, Waidyaratne S, Dalén L, Angerbjörn A, Vila C, Hersteinsson P, Fuglei E, White PA, Goltsman M, Kapel CM, Wayne RK. Sea ice occurrence predicts genetic isolation in the Arctic fox. Molecular Ecology. 16: 4241-55. PMID 17868292 DOI: 10.1111/j.1365-294X.2007.03507.x  1
2007 Milá B, McCormack JE, Castañeda G, Wayne RK, Smith TB. Recent postglacial range expansion drives the rapid diversification of a songbird lineage in the genus Junco. Proceedings. Biological Sciences / the Royal Society. 274: 2653-60. PMID 17725978 DOI: 10.1098/rspb.2007.0852  1
2007 Musiani M, Leonard JA, Cluff HD, Gates CC, Mariani S, Paquet PC, Vilà C, Wayne RK. Differentiation of tundra/taiga and boreal coniferous forest wolves: genetics, coat colour and association with migratory caribou. Molecular Ecology. 16: 4149-70. PMID 17725575 DOI: 10.1111/j.1365-294X.2007.03458.x  1
2007 Leonard JA, Vilà C, Fox-Dobbs K, Koch PL, Wayne RK, Van Valkenburgh B. Megafaunal extinctions and the disappearance of a specialized wolf ecomorph. Current Biology : Cb. 17: 1146-50. PMID 17583509 DOI: 10.1016/j.cub.2007.05.072  1
2007 Sutter NB, Bustamante CD, Chase K, Gray MM, Zhao K, Zhu L, Padhukasahasram B, Karlins E, Davis S, Jones PG, Quignon P, Johnson GS, Parker HG, Fretwell N, Mosher DS, ... ... Wayne RK, et al. A single IGF1 allele is a major determinant of small size in dogs. Science (New York, N.Y.). 316: 112-5. PMID 17412960 DOI: 10.1126/science.1137045  1
2007 Milá B, Smith TB, Wayne RK. Speciation and rapid phenotypic differentiation in the yellow-rumped warbler Dendroica coronata complex. Molecular Ecology. 16: 159-73. PMID 17181728 DOI: 10.1111/j.1365-294X.2006.03119.x  1
2007 Koepfli KP, Gompper ME, Eizirik E, Ho CC, Linden L, Maldonado JE, Wayne RK. Phylogeny of the Procyonidae (Mammalia: Carnivora): molecules, morphology and the Great American Interchange. Molecular Phylogenetics and Evolution. 43: 1076-95. PMID 17174109 DOI: 10.1016/j.ympev.2006.10.003  1
2007 Randall DA, Pollinger JP, Wayne RK, Tallents LA, Johnson PJ, Macdonald DW. Inbreeding is reduced by female-biased dispersal and mating behavior in Ethiopian wolves Behavioral Ecology. 18: 579-589. DOI: 10.1093/beheco/arm010  1
2007 Leonard JA, Shanks O, Hofreiter M, Kreuz E, Hodges L, Ream W, Wayne RK, Fleischer RC. Animal DNA in PCR reagents plagues ancient DNA research Journal of Archaeological Science. 34: 1361-1366. DOI: 10.1016/j.jas.2006.10.023  1
2007 Perrine JD, Pollinger JP, Sacks BN, Barrett RH, Wayne RK. Genetic evidence for the persistence of the critically endangered Sierra Nevada red fox in California Conservation Genetics. 8: 1083-1095. DOI: 10.1007/s10592-006-9265-z  1
2006 Milá B, Smith TB, Wayne RK. Postglacial population expansion drives the evolution of long-distance migration in a songbird. Evolution; International Journal of Organic Evolution. 60: 2403-9. PMID 17236431 DOI: 10.1554/06-153.1  1
2006 Kohn MH, Murphy WJ, Ostrander EA, Wayne RK. Genomics and conservation genetics. Trends in Ecology & Evolution. 21: 629-37. PMID 16908089 DOI: 10.1016/j.tree.2006.08.001  1
2006 Riley SP, Pollinger JP, Sauvajot RM, York EC, Bromley C, Fuller TK, Wayne RK. A southern California freeway is a physical and social barrier to gene flow in carnivores. Molecular Ecology. 15: 1733-41. PMID 16689893 DOI: 10.1111/j.1365-294X.2006.02907.x  1
2006 Koepfli KP, Jenks SM, Eizirik E, Zahirpour T, Van Valkenburgh B, Wayne RK. Molecular systematics of the Hyaenidae: relationships of a relictual lineage resolved by a molecular supermatrix. Molecular Phylogenetics and Evolution. 38: 603-20. PMID 16503281 DOI: 10.1016/j.ympev.2005.10.017  1
2006 Aguilar A, Edwards SV, Smith TB, Wayne RK. Patterns of variation in MHC class II beta loci of the little greenbul (Andropadus virens) with comments on MHC evolution in birds. The Journal of Heredity. 97: 133-42. PMID 16489149 DOI: 10.1093/jhered/esj013  0.64
2005 Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature. 438: 803-19. PMID 16341006 DOI: 10.1038/nature04338  1
2005 Pollinger JP, Bustamante CD, Fledel-Alon A, Schmutz S, Gray MM, Wayne RK. Selective sweep mapping of genes with large phenotypic effects. Genome Research. 15: 1809-19. PMID 16339379 DOI: 10.1101/gr.4374505  1
2005 Gibson RM, Pires D, Delaney KS, Wayne RK. Microsatellite DNA analysis shows that greater sage grouse leks are not kin groups. Molecular Ecology. 14: 4453-9. PMID 16313605 DOI: 10.1111/j.1365-294X.2005.02746.x  1
2005 Aguilar A, Smith TB, Wayne RK. A comparison of variation between a MHC pseudogene and microsatellite loci of the little greenbul (Andropadus virens). Bmc Evolutionary Biology. 5: 47. PMID 16159389 DOI: 10.1186/1471-2148-5-47  0.64
2005 Leonard JA, Vilà C, Wayne RK. Legacy lost: genetic variability and population size of extirpated US grey wolves (Canis lupus). Molecular Ecology. 14: 9-17. PMID 15643947 DOI: 10.1111/j.1365-294X.2004.02389.x  1
2004 Aguilar A, Roemer G, Debenham S, Binns M, Garcelon D, Wayne RK. High MHC diversity maintained by balancing selection in an otherwise genetically monomorphic mammal. Proceedings of the National Academy of Sciences of the United States of America. 101: 3490-4. PMID 14990802 DOI: 10.1073/pnas.0306582101  0.64
2003 Koepfli KP, Wayne RK. Type I STS markers are more informative than cytochrome B in phylogenetic reconstruction of the Mustelidae (Mammalia: Carnivora). Systematic Biology. 52: 571-93. PMID 14530127 DOI: 10.1080/10635150390235368  1
2003 Amrine-Madsen H, Koepfli KP, Wayne RK, Springer MS. A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships. Molecular Phylogenetics and Evolution. 28: 225-40. PMID 12878460 DOI: 10.1016/S1055-7903(03)00118-0  1
2003 Kohn MH, Pelz HJ, Wayne RK. Locus-specific genetic differentiation at Rw among warfarin-resistant rat (Rattus norvegicus) populations. Genetics. 164: 1055-70. PMID 12871915  1
2002 Leonard JA, Wayne RK, Wheeler J, Valadez R, Guillén S, Vilà C. Ancient DNA evidence for Old World origin of New World dogs. Science (New York, N.Y.). 298: 1613-6. PMID 12446908 DOI: 10.1126/science.1076980  1
2001 Torres E, Lees DC, Vane-Wright RI, Kremen C, Leonard JA, Wayne RK. Examining monophyly in a large radiation of Madagascan butterflies (Lepidoptera: Satyrinae: Mycalesina) based on mitochondrial DNA data. Molecular Phylogenetics and Evolution. 20: 460-73. PMID 11527471 DOI: 10.1006/mpev.2001.0984  1
2001 Vilà C, Leonard JA, Gotherstrom A, Marklund S, Sandberg K, Liden K, Wayne RK, Ellegren H. Widespread origins of domestic horse lineages. Science (New York, N.Y.). 291: 474-7. PMID 11161199 DOI: 10.1126/science.291.5503.474  1
2000 Kohn MH, Pelz HJ, Wayne RK. Natural selection mapping of the warfarin-resistance gene. Proceedings of the National Academy of Sciences of the United States of America. 97: 7911-5. PMID 10884423 DOI: 10.1073/pnas.97.14.7911  1
2000 Leonard JA, Wayne RK, Cooper A. Population genetics of ice age brown bears. Proceedings of the National Academy of Sciences of the United States of America. 97: 1651-4. PMID 10677513 DOI: 10.1073/pnas.040453097  1
1999 Vila C, Amorim IR, Leonard JA, Posada D, Castroviejo J, Petrucci-Fonseca F, Crandall KA, Ellegren H, Wayne RK. Mitochondrial DNA phylogeography and population history of the grey wolf canis lupus Molecular Ecology. 8: 2089-103. PMID 10632860 DOI: 10.1046/j.1365-294X.1999.00825.x  1
1999 Kohn MH, York EC, Kamradt DA, Haught G, Sauvajot RM, Wayne RK. Estimating population size by genotyping faeces. Proceedings. Biological Sciences / the Royal Society. 266: 657-63. PMID 10331287 DOI: 10.1098/rspb.1999.0686  1
1998 Frantzen MA, Silk JB, Ferguson JW, Wayne RK, Kohn MH. Empirical evaluation of preservation methods for faecal DNA. Molecular Ecology. 7: 1423-8. PMID 9787450 DOI: 10.1046/j.1365-294x.1998.00449.x  1
1998 Hadly EA, Kohn MH, Leonard JA, Wayne RK. A genetic record of population isolation in pocket gophers during Holocene climatic change. Proceedings of the National Academy of Sciences of the United States of America. 95: 6893-6. PMID 9618509 DOI: 10.1073/pnas.95.12.6893  1
1998 González S, Maldonado JE, Leonard JA, Vilà C, Duarte JM, Merino M, Brum-Zorrilla N, Wayne RK. Conservation genetics of the endangered Pampas deer (Ozotoceros bezoarticus). Molecular Ecology. 7: 47-56. PMID 9465416 DOI: 10.1046/j.1365-294x.1998.00303.x  1
1997 Kohn MH, Wayne RK. Facts from feces revisited. Trends in Ecology & Evolution. 12: 223-7. PMID 21238046 DOI: 10.1016/S0169-5347(97)01050-1  1
1997 Wayne RK, Geffen E, Girman DJ, Koepfli KP, Lau LM, Marshall CR. Molecular systematics of the Canidae. Systematic Biology. 46: 622-53. PMID 11975336  1
1993 Mercure A, Ralls K, Koepfli KP, Wayne RK. GENETIC SUBDIVISIONS AMONG SMALL CANIDS: MITOCHONDRIAL DNA DIFFERENTIATION OF SWIFT, KIT, AND ARCTIC FOXES. Evolution; International Journal of Organic Evolution. 47: 1313-1328. PMID 28564903 DOI: 10.1111/j.1558-5646.1993.tb02157.x  0.6
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