Chelsea D. Specht - Publications

Affiliations: 
2005-2017 Integrative Biology University of California, Berkeley, Berkeley, CA 
 2017- School of Integrative Plant Sciences Cornell University, Ithaca, NY, United States 
Area:
Processes and patterns involved in the evolution and diversification of plants, especially the monocots
Website:
https://blogs.cornell.edu/specht/

62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Chery JG, Pace MR, Acevedo-Rodríguez P, Specht CD, Rothfels CJ. Modifications during Early Plant Development Promote the Evolution of Nature's Most Complex Woods. Current Biology : Cb. PMID 31839457 DOI: 10.1016/j.cub.2019.11.003  1
2019 Chery JG, Acevedo-Rodríguez P, Rothfels CJ, Specht CD. Phylogeny of Paullinia L. (Paullinieae: Sapindaceae), a diverse genus of lianas with dynamic fruit evolution. Molecular Phylogenetics and Evolution. 140: 106577. PMID 31415869 DOI: 10.1016/j.ympev.2019.106577  1
2018 Givnish TJ, Zuluaga A, Spalink D, Soto Gomez M, Lam VKY, Saarela JM, Sass C, Iles WJD, de Sousa DJL, Leebens-Mack J, Chris Pires J, Zomlefer WB, Gandolfo MA, Davis JI, Stevenson DW, ... ... Specht CD, et al. Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots. American Journal of Botany. PMID 30368769 DOI: 10.1002/ajb2.1178  1
2018 Dorsey BL, Gregory TJ, Sass C, Specht CD. Pleistocene diversification in an ancient lineage: a role for glacial cycles in the evolutionary history of Dioon Lindl. (Zamiaceae). American Journal of Botany. 105: 1512-1530. PMID 30229556 DOI: 10.1002/ajb2.1149  1
2018 Almeida AMR, Piñeyro-Nelson A, Yockteng RB, Specht CD. Comparative analysis of whole flower transcriptomes in the Zingiberales. Peerj. 6: e5490. PMID 30155368 DOI: 10.7717/peerj.5490  0.68
2018 Smith SY, Iles WJD, Benedict JC, Specht CD. Building the monocot tree of death: Progress and challenges emerging from the macrofossil-rich Zingiberales. American Journal of Botany. PMID 30071130 DOI: 10.1002/ajb2.1123  0.48
2017 Chery JG, Sass C, Specht CD. Development of single-copy nuclear intron markers for species-level phylogenetics: Case study with Paullinieae (Sapindaceae). Applications in Plant Sciences. 5. PMID 28989824 DOI: 10.3732/apps.1700051  1
2016 Iles WJ, Sass C, Lagomarsino L, Benson-Martin G, Driscoll H, Specht CD. The phylogeny of Heliconia (Heliconiaceae) and the evolution of floral presentation. Molecular Phylogenetics and Evolution. PMID 27998817 DOI: 10.1016/j.ympev.2016.12.001  1
2016 Benedict JC, Smith SY, Specht CD, Collinson ME, Leong-Škorničková J, Parkinson DY, Marone F. Species diversity driven by morphological and ecological disparity: a case study of seeds of Zingiberales (bananas, gingers, and relatives). Aob Plants. PMID 27594701 DOI: 10.1093/aobpla/plw063  0.48
2016 André T, Salzman S, Wendt T, Specht C. Speciation dynamics and biogeography of Neotropical spiral gingers (Costaceae). Molecular Phylogenetics and Evolution. 103: 55-63. PMID 27400627 DOI: 10.1016/j.ympev.2016.07.008  0.64
2016 Sass C, Iles WJ, Barrett CF, Smith SY, Specht CD. Revisiting the Zingiberales: using multiplexed exon capture to resolve ancient and recent phylogenetic splits in a charismatic plant lineage. Peerj. 4: e1584. PMID 26819846 DOI: 10.7717/peerj.1584  0.48
2016 Specht CD. The rise of evo-devo: Pan-American Society for Evolutionary Developmental Biology sets the stage. American Journal of Botany. PMID 26772309 DOI: 10.3732/ajb.1500441  1
2015 Morioka K, Yockteng R, Almeida AM, Specht CD. Loss of YABBY2-Like Gene Expression May Underlie the Evolution of the Laminar Style in Canna and Contribute to Floral Morphological Diversity in the Zingiberales. Frontiers in Plant Science. 6: 1106. PMID 26734021 DOI: 10.3389/fpls.2015.01106  1
2015 Thessen AE, Bunker DE, Buttigieg PL, Cooper LD, Dahdul WM, Domisch S, Franz NM, Jaiswal P, Lawrence-Dill CJ, Midford PE, Mungall CJ, Ramírez MJ, Specht CD, Vogt L, Vos RA, et al. Emerging semantics to link phenotype and environment. Peerj. 3: e1470. PMID 26713234 DOI: 10.7717/peerj.1470  1
2015 Benedict JC, Smith SY, Collinson ME, Leong-Škorničková J, Specht CD, Marone F, Xiao X, Parkinson DY. Seed morphology and anatomy and its utility in recognizing subfamilies and tribes of Zingiberaceae. American Journal of Botany. PMID 26507111 DOI: 10.3732/ajb.1500300  0.48
2015 Salzman S, Driscoll HE, Renner T, André T, Shen S, Specht CD. Spiraling into History: A Molecular Phylogeny and Investigation of Biogeographic Origins and Floral Evolution for the Genus Costus. Systematic Botany. 40: 104-115. PMID 26146450 DOI: 10.1600/036364415X686404  1
2015 Moczek AP, Sears KE, Stollewerk A, Wittkopp PJ, Diggle P, Dworkin I, Ledon-Rettig C, Matus DQ, Roth S, Abouheif E, Brown FD, Chiu CH, Cohen CS, Tomaso AW, Gilbert SF, ... ... Specht C, et al. The significance and scope of evolutionary developmental biology: a vision for the 21st century. Evolution & Development. 17: 198-219. PMID 25963198 DOI: 10.1111/ede.12125  1
2015 Almeida AM, Yockteng R, Otoni WC, Specht CD. Positive selection on the K domain of the AGAMOUS protein in the Zingiberales suggests a mechanism for the evolution of androecial morphology. Evodevo. 6: 7. PMID 25883781 DOI: 10.1186/s13227-015-0002-x  1
2015 Rocha de Almeida AM, Yockteng R, Specht CD. Evolution of petaloidy in the zingiberales: An assessment of the relationship between ultrastructure and gene expression patterns. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 25866364 DOI: 10.1002/dvdy.24280  1
2015 Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Specht CD, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/journal.pbio.1002033  1
2015 Specht CD, Howarth DG. Adaptation in flower form: a comparative evodevo approach. The New Phytologist. 206: 74-90. PMID 25470511 DOI: 10.1111/nph.13198  1
2015 André T, Specht C, Salzman S, Palma-Silva C, Wendt T. Evolution of species diversity in the genus Chamaecostus (Costaceae): Molecular phylogenetics and morphometric approaches Phytotaxa. 204: 265-276. DOI: 10.11646/phytotaxa.204.4.3  1
2015 Benedict JC, Smith SY, Collinson ME, Leong-Škorničková J, Specht CD, Fife JL, Marone F, Xiao X, Parkinson DY. Evolutionary significance of seed structure in Alpinioideae (Zingiberaceae) Botanical Journal of the Linnean Society. 178: 441-466. DOI: 10.1111/boj.12257  0.48
2014 de Almeida AM, Yockteng R, Schnable J, Alvarez-Buylla ER, Freeling M, Specht CD. Co-option of the polarity gene network shapes filament morphology in angiosperms. Scientific Reports. 4: 6194. PMID 25168962 DOI: 10.1038/srep06194  0.56
2014 Ruiz-Sanchez E, Specht CD. Ecological speciation in Nolina parviflora (Asparagaceae): lacking spatial connectivity along of the Trans-Mexican Volcanic Belt. Plos One. 9: e98754. PMID 24905911 DOI: 10.1371/journal.pone.0098754  1
2014 Gándara E, Specht CD, Sosa V. Origin and diversification of the Milla Clade (Brodiaeoideae, Asparagaceae): a Neotropical group of six geophytic genera. Molecular Phylogenetics and Evolution. 75: 118-25. PMID 24594063 DOI: 10.1016/j.ympev.2014.02.014  1
2014 Barrett CF, Specht CD, Leebens-Mack J, Stevenson DW, Zomlefer WB, Davis JI. Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)? Annals of Botany. 113: 119-33. PMID 24280362 DOI: 10.1093/aob/mct264  1
2013 Yockteng R, Almeida AM, Yee S, Andre T, Hill C, Specht CD. A method for extracting high-quality RNA from diverse plants for next-generation sequencing and gene expression analyses. Applications in Plant Sciences. 1. PMID 25202509 DOI: 10.3732/apps.1300070  0.56
2013 Yockteng R, Almeida AM, Morioka K, Alvarez-Buylla ER, Specht CD. Molecular evolution and patterns of duplication in the SEP/AGL6-like lineage of the Zingiberales: a proposed mechanism for floral diversification. Molecular Biology and Evolution. 30: 2401-22. PMID 23938867 DOI: 10.1093/molbev/mst137  1
2013 Renner T, Specht CD. Inside the trap: gland morphologies, digestive enzymes, and the evolution of plant carnivory in the Caryophyllales. Current Opinion in Plant Biology. 16: 436-42. PMID 23830995 DOI: 10.1016/j.pbi.2013.06.009  1
2013 Harmon LJ, Baumes J, Hughes C, Soberon J, Specht CD, Turner W, Lisle C, Thacker RW. Arbor: comparative analysis workflows for the tree of life. Plos Currents. 5. PMID 23811960 DOI: 10.1371/currents.tol.099161de5eabdee073fd3d21a44518dc  1
2013 Almeida AM, Brown A, Specht CD. Tracking the development of the petaloid fertile stamen in Canna indica: insights into the origin of androecial petaloidy in the Zingiberales. Aob Plants. 5: plt009. PMID 23539493 DOI: 10.1093/aobpla/plt009  1
2013 Merckx VS, Kissling J, Hentrich H, Janssens SB, Mennes CB, Specht CD, Smets EF. Phylogenetic relationships of the mycoheterotrophic genus Voyria and the implications for the biogeographic history of Gentianaceae. American Journal of Botany. 100: 712-21. PMID 23535773 DOI: 10.3732/ajb.1200330  1
2013 Ruiz-Sanchez E, Specht CD. Influence of the geological history of the trans-mexican volcanic belt on the diversification of nolina parviflora (Asparagaceae: Nolinoideae) Journal of Biogeography. 40: 1336-1347. DOI: 10.1111/jbi.12073  1
2013 Xu FX, Chen DQ, Specht C. Comparative microsporogenesis and anther development of selected species from Magnoliaceae Nordic Journal of Botany. 31: 291-300. DOI: 10.1111/j.1756-1051.2012.01445.x  1
2012 Renner T, Specht CD. Molecular and functional evolution of class I chitinases for plant carnivory in the caryophyllales. Molecular Biology and Evolution. 29: 2971-85. PMID 22490823 DOI: 10.1093/molbev/mss106  1
2012 Merckx VS, Janssens SB, Hynson NA, Specht CD, Bruns TD, Smets EF. Mycoheterotrophic interactions are not limited to a narrow phylogenetic range of arbuscular mycorrhizal fungi. Molecular Ecology. 21: 1524-32. PMID 22313510 DOI: 10.1111/j.1365-294X.2012.05472.x  1
2012 Cron GV, Pirone C, Bartlett M, Kress WJ, Specht C. Phylogenetic relationships and evolution in the Strelitziaceae (Zingiberales) Systematic Botany. 37: 606-619. DOI: 10.1600/036364412X648562  1
2012 Specht CD, Yockteng R, Almeida AM, Kirchoff BK, Kress WJ. Homoplasy, Pollination, and Emerging Complexity During the Evolution of Floral Development in the Tropical Gingers (Zingiberales) Botanical Review. 78: 440-462. DOI: 10.1007/s12229-012-9111-6  1
2012 Merckx VSFT, Smets EF, Specht CD. Biogeography and conservation Mycoheterotrophy: the Biology of Plants Living On Fungi. 103-156. DOI: 10.1007/978-1-4614-5209-6_3  1
2011 Carroll A, Specht CD. Understanding Plant Cellulose Synthases through a Comprehensive Investigation of the Cellulose Synthase Family Sequences. Frontiers in Plant Science. 2: 5. PMID 22629257 DOI: 10.3389/fpls.2011.00005  1
2011 Bartlett ME, Specht CD. Changes in expression pattern of the teosinte branched1-like genes in the Zingiberales provide a mechanism for evolutionary shifts in symmetry across the order. American Journal of Botany. 98: 227-43. PMID 21613112 DOI: 10.3732/ajb.1000246  1
2011 Wake DB, Wake MH, Specht CD. Homoplasy: from detecting pattern to determining process and mechanism of evolution. Science (New York, N.Y.). 331: 1032-5. PMID 21350170 DOI: 10.1126/science.1188545  1
2011 Renner T, Specht CD. A sticky situation: Assessing adaptations for plant carnivory in the caryophyllales by means of stochastic character mapping International Journal of Plant Sciences. 172: 889-901. DOI: 10.1086/660882  1
2010 Bartlett ME, Specht CD. Evidence for the involvement of Globosa-like gene duplications and expression divergence in the evolution of floral morphology in the Zingiberales. The New Phytologist. 187: 521-41. PMID 20456055 DOI: 10.1111/j.1469-8137.2010.03279.x  1
2010 Sass C, Specht CD. Phylogenetic estimation of the core Bromelioids with an emphasis on the genus Aechmea (Bromeliaceae). Molecular Phylogenetics and Evolution. 55: 559-71. PMID 20064621 DOI: 10.1016/j.ympev.2010.01.005  1
2010 Robinson GE, Banks JA, Padilla DK, Burggren WW, Cohen CS, Delwiche CF, Funk V, Hoekstra HE, Jarvis ED, Johnson L, Martindale MQ, Rio CMD, Medina M, Salt DE, Sinha S, ... Specht C, et al. Empowering 21st century biology Bioscience. 60: 923-930. DOI: 10.1525/bio.2010.60.11.8  1
2009 Kirchoff BK, Lagomarsino LP, Newman WH, Bartlett ME, Specht CD. Early floral development of Heliconia latispatha (Heliconiaceae), a key taxon for understanding the evolution of flower development in the Zingiberales. American Journal of Botany. 96: 580-93. PMID 21628214 DOI: 10.3732/ajb.0800305  1
2009 Renner T, Bragg J, Driscoll HE, Cho J, Jackson AO, Specht CD. Virus-induced gene silencing in the culinary ginger (Zingiber officinale): an effective mechanism for down-regulating gene expression in tropical monocots. Molecular Plant. 2: 1084-94. PMID 19825682 DOI: 10.1093/mp/ssp033  1
2009 Chen LJ, Diao ZY, Specht C, Sung ZR. Molecular evolution of VEF-domain-containing PcG genes in plants. Molecular Plant. 2: 738-54. PMID 19825653 DOI: 10.1093/mp/ssp032  1
2009 Specht CD, Bartlett ME. Flower evolution: The origin and subsequent diversification of the angiosperm flower Annual Review of Ecology, Evolution, and Systematics. 40: 217-243. DOI: 10.1146/annurev.ecolsys.110308.120203  1
2008 Bartlett ME, Kirchoff BK, Specht CD. Epi-illumination microscopy coupled to in situ hybridization and its utility in the study of evolution and development in non-model species. Development Genes and Evolution. 218: 273-9. PMID 18299889 DOI: 10.1007/s00427-008-0211-6  1
2008 Nguyen NH, Driscoll HE, Specht CD. A molecular phylogeny of the wild onions (Allium; Alliaceae) with a focus on the western North American center of diversity. Molecular Phylogenetics and Evolution. 47: 1157-72. PMID 18226928 DOI: 10.1016/j.ympev.2007.12.006  1
2007 Sass C, Little DP, Stevenson DW, Specht CD. DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads. Plos One. 2: e1154. PMID 17987130 DOI: 10.1371/journal.pone.0001154  1
2007 Funk VA, Specht CD. Meta-trees: Grafting for a global perspective Proceedings of the Biological Society of Washington. 120: 232-240. DOI: 10.2988/0006-324X(2007)120[232:MGFAGP]2.0.CO;2  1
2006 Specht CD. Systematics and evolution of the tropical monocot family Costaceae (Zingiberales): A multiple dataset approach Systematic Botany. 31: 89-106. DOI: 10.1600/036364406775971840  1
2006 Davis JI, Petersen G, Seberg O, Stevenson DW, Hardy CR, Simmons MP, Michelangeli FA, Goldman DH, Campbell LM, Specht CD, Cohen JI. Are mitochondrial genes useful for the analysis of monocot relationships? Taxon. 55: 857-870.  1
2006 Specht CD, Stevenson DW. A new phylogeny-based generic classification of Costaceae (Zingiberales) Taxon. 55: 153-163.  1
2004 Davis JI, Stevenson DW, Petersen G, Seberg O, Campbell LM, Freudenstein JV, Goldman DH, Hardy CR, Michelangeli FA, Simmons MP, Specht CD, Vergara-Silva F, Gandolfo M. A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values Systematic Botany. 29: 467-510. DOI: 10.1600/0363644041744365  1
2001 Specht CD, Kress WJ, Stevenson DW, DeSalle R. A molecular phylogeny of Costaceae (Zingiberales). Molecular Phylogenetics and Evolution. 21: 333-45. PMID 11741377 DOI: 10.1006/mpev.2001.1029  1
2000 Lim J, Helariutta Y, Specht CD, Jung J, Sims L, Bruce WB, Diehn S, Benfey PN. Molecular analysis of the SCARECROW gene in maize reveals a common basis for radial patterning in diverse meristems Plant Cell. 12: 1307-1318. PMID 10948251 DOI: 10.1105/tpc.12.8.1307  1
1997 Shapiro RE, Specht CD, Collins BE, Woods AS, Cotter RJ, Schnaar RL. Identification of a ganglioside recognition domain of tetanus toxin using a novel ganglioside photoaffinity ligand Journal of Biological Chemistry. 272: 30380-30386. PMID 9374528 DOI: 10.1074/jbc.272.48.30380  1
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