Lex E. Flagel, Ph.D. - Publications

Affiliations: 
2009 Ecology, Evolution, and Organismal Biology Iowa State University, Ames, IA, United States 
Area:
Genetics

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Tucker SL, Dohleman FG, Grapov D, Flagel L, Yang S, Wegener KM, Kosola KR, Swarup S, Rapp RA, Bedair M, Halls SC, Glenn KC, Hall MA, Allen E, Rice EA. Evaluating maize phenotypic variance, heritability, and yield relationships at multiple biological scales across agronomically relevant environments. Plant, Cell & Environment. PMID 31733168 DOI: 10.1111/Pce.13681  0.8
2019 Flagel LE, Blackman BK, Fishman L, Monnahan PJ, Sweigart A, Kelly JK. GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity. Plos Computational Biology. 15: e1006949. PMID 30986215 DOI: 10.1371/Journal.Pcbi.1006949  1
2018 Flagel L, Brandvain Y, Schrider DR. The Unreasonable Effectiveness of Convolutional Neural Networks in Population Genetic Inference. Molecular Biology and Evolution. PMID 30517664 DOI: 10.1093/Molbev/Msy224  0.32
2016 Li L, Briskine R, Schaefer R, Schnable PS, Myers CL, Flagel LE, Springer NM, Muehlbauer GJ. Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias. Bmc Genomics. 17: 875. PMID 27814670 DOI: 10.1186/S12864-016-3194-0  0.36
2015 McGaugh SE, Bronikowski AM, Kuo CH, Reding DM, Addis EA, Flagel LE, Janzen FJ, Schwartz TS. Rapid molecular evolution across amniotes of the IIS/TOR network. Proceedings of the National Academy of Sciences of the United States of America. 112: 7055-60. PMID 25991861 DOI: 10.1073/Pnas.1419659112  1
2015 Flagel LE, Swarup S, Chen M, Bauer C, Wanjugi H, Carroll M, Hill P, Tuscan M, Bansal R, Flannagan R, Clark TL, Michel AP, Head GP, Goldman BS. Genetic markers for western corn rootworm resistance to Bt toxin. G3 (Bethesda, Md.). 5: 399-405. PMID 25566794 DOI: 10.1534/G3.114.016485  1
2015 Sweigart AL, Flagel LE. Evidence of natural selection acting on a polymorphic hybrid incompatibility locus in Mimulus. Genetics. 199: 543-54. PMID 25428983 DOI: 10.1534/Genetics.114.171819  1
2014 Brandvain Y, Kenney AM, Flagel L, Coop G, Sweigart AL. Speciation and introgression between Mimulus nasutus and Mimulus guttatus. Plos Genetics. 10: e1004410. PMID 24967630 DOI: 10.1371/Journal.Pgen.1004410  1
2014 Flagel LE, Bansal R, Kerstetter RA, Chen M, Carroll M, Flannagan R, Clark T, Goldman BS, Michel AP. Western corn rootworm (Diabrotica virgifera virgifera) transcriptome assembly and genomic analysis of population structure. Bmc Genomics. 15: 195. PMID 24628835 DOI: 10.1186/1471-2164-15-195  1
2014 Flagel LE, Willis JH, Vision TJ. The standing pool of genomic structural variation in a natural population of Mimulus guttatus. Genome Biology and Evolution. 6: 53-64. PMID 24336482 DOI: 10.1093/Gbe/Evt199  1
2014 Flagel LE, Blackman BK. The first ten years of plant genome sequencing and prospects for the next decade Plant Genome Diversity. 1: 1-15. DOI: 10.1007/978-3-7091-1130-7_1  1
2012 Grover CE, Gallagher JP, Szadkowski EP, Yoo MJ, Flagel LE, Wendel JF. Homoeolog expression bias and expression level dominance in allopolyploids. The New Phytologist. 196: 966-71. PMID 23033870 DOI: 10.1111/J.1469-8137.2012.04365.X  1
2012 Flagel LE, Wendel JF, Udall JA. Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton. Bmc Genomics. 13: 302. PMID 22768919 DOI: 10.1186/1471-2164-13-302  1
2012 Wendel JF, Flagel LE, Adams KL. Jeans, genes, and genomes: Cotton as a model for studying polyploidy Polyploidy and Genome Evolution. 2147483647: 181-207. DOI: 10.1007/978-3-642-31442-1_10  1
2011 Bao Y, Hu G, Flagel LE, Salmon A, Bezanilla M, Paterson AH, Wang Z, Wendel JF. Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium). Proceedings of the National Academy of Sciences of the United States of America. 108: 21152-7. PMID 22160709 DOI: 10.1073/Pnas.1115926109  1
2010 Rapp RA, Haigler CH, Flagel L, Hovav RH, Udall JA, Wendel JF. Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication. Bmc Biology. 8: 139. PMID 21078138 DOI: 10.1186/1741-7007-8-139  1
2010 MacIntosh GC, Hillwig MS, Meyer A, Flagel L. RNase T2 genes from rice and the evolution of secretory ribonucleases in plants. Molecular Genetics and Genomics : Mgg. 283: 381-96. PMID 20182746 DOI: 10.1007/S00438-010-0524-9  1
2010 Flagel LE, Wendel JF. Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation. The New Phytologist. 186: 184-93. PMID 20002320 DOI: 10.1111/J.1469-8137.2009.03107.X  1
2010 Salmon A, Flagel L, Ying B, Udall JA, Wendel JF. Homoeologous nonreciprocal recombination in polyploid cotton. The New Phytologist. 186: 123-34. PMID 19925554 DOI: 10.1111/J.1469-8137.2009.03093.X  1
2009 Chaudhary B, Hovav R, Flagel L, Mittler R, Wendel JF. Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium). Bmc Genomics. 10: 378. PMID 19686594 DOI: 10.1186/1471-2164-10-378  1
2009 Flagel LE, Wendel JF. Gene duplication and evolutionary novelty in plants. The New Phytologist. 183: 557-64. PMID 19555435 DOI: 10.1111/J.1469-8137.2009.02923.X  1
2009 Chaudhary B, Flagel L, Stupar RM, Udall JA, Verma N, Springer NM, Wendel JF. Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium). Genetics. 182: 503-17. PMID 19363125 DOI: 10.1534/Genetics.109.102608  1
2009 Flagel LE, Chen L, Chaudhary B, Wendel JF. Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton. The Journal of Heredity. 100: 487-90. PMID 19264969 DOI: 10.1093/Jhered/Esp003  1
2008 Flagel LE, Rapp RA, Grover CE, Widrlechner MP, Hawkins J, Grafenberg JL, Alvarez I, Chung GY, Wendel JF. Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea. American Journal of Botany. 95: 756-65. PMID 21632401 DOI: 10.3732/Ajb.0800049  1
2008 Doyle JJ, Flagel LE, Paterson AH, Rapp RA, Soltis DE, Soltis PS, Wendel JF. Evolutionary genetics of genome merger and doubling in plants. Annual Review of Genetics. 42: 443-61. PMID 18983261 DOI: 10.1146/Annurev.Genet.42.110807.091524  1
2008 Hovav R, Chaudhary B, Udall JA, Flagel L, Wendel JF. Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton. Genetics. 179: 1725-33. PMID 18562666 DOI: 10.1534/Genetics.108.089656  1
2008 Hovav R, Udall JA, Chaudhary B, Rapp R, Flagel L, Wendel JF. Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant. Proceedings of the National Academy of Sciences of the United States of America. 105: 6191-5. PMID 18420816 DOI: 10.1073/Pnas.0711569105  1
2008 Flagel L, Udall J, Nettleton D, Wendel J. Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution. Bmc Biology. 6: 16. PMID 18416842 DOI: 10.1186/1741-7007-6-16  1
2008 Hovav R, Udall JA, Chaudhary B, Hovav E, Flagel L, Hu G, Wendel JF. The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism. Plos Genetics. 4: e25. PMID 18248099 DOI: 10.1371/Journal.Pgen.0040025  1
2008 Hovav R, Udall JA, Hovav E, Rapp R, Flagel L, Wendel JF. A majority of cotton genes are expressed in single-celled fiber. Planta. 227: 319-29. PMID 17849148 DOI: 10.1007/S00425-007-0619-7  1
2007 Udall JA, Flagel LE, Cheung F, Woodward AW, Hovav R, Rapp RA, Swanson JM, Lee JJ, Gingle AR, Nettleton D, Town CD, Chen ZJ, Wendel JF. Spotted cotton oligonucleotide microarrays for gene expression analysis. Bmc Genomics. 8: 81. PMID 17389046 DOI: 10.1186/1471-2164-8-81  1
2006 Senchina DS, Flagel LE, Wendel JF, Kohut ML. PHENETIC COMPARISON OF SEVEN Echinacea SPECIES BASED ON IMMUNOMODULATORY CHARACTERISTICS. Economic Botany. 60: 205-211. PMID 18301733 DOI: 10.1663/0013-0001(2006)60[205:Pcoses]2.0.Co;2  1
2005 Flagel L, Christensen JR, Gustus CD, Smith KP, Olhoft PM, Somers DA, Matthews PD. Inexpensive, high throughput microplate format for plant nucleic acid extraction: Suitable for multiplex southern analyses of transgenes Crop Science. 45: 1985-1989. DOI: 10.2135/Cropsci2004.0657  1
2004 Olhoft PM, Flagel LE, Somers DA. T-DNA locus structure in a large population of soybean plants transformed using the Agrobacterium-mediated cotyledonary-node method. Plant Biotechnology Journal. 2: 289-300. PMID 17134390 DOI: 10.1111/J.1467-7652.2004.00070.X  1
2003 Olhoft PM, Flagel LE, Donovan CM, Somers DA. Efficient soybean transformation using hygromycin B selection in the cotyledonary-node method. Planta. 216: 723-35. PMID 12624759 DOI: 10.1007/S00425-002-0922-2  1
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