| Year |
Citation |
Score |
| 2020 |
Gelsinger DR, Dallon E, Reddy R, Mohammad F, Buskirk AR, DiRuggiero J. Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution. Nucleic Acids Research. PMID 32382758 DOI: 10.1093/Nar/Gkaa304 |
0.318 |
|
| 2020 |
Uritskiy G, Tisza MJ, Gelsinger DR, Munn A, Taylor J, DiRuggiero J. Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community. Environmental Microbiology. PMID 32307861 DOI: 10.1111/1462-2920.15023 |
0.334 |
|
| 2019 |
Uritskiy G, Getsin S, Munn A, Gomez-Silva B, Davila A, Glass B, Taylor J, DiRuggiero J. Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert. The Isme Journal. PMID 31273300 DOI: 10.1038/S41396-019-0468-Y |
0.311 |
|
| 2019 |
Uritskiy G, DiRuggiero J. Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic Microbiome. Genes. 10. PMID 30875864 DOI: 10.3390/Genes10030220 |
0.304 |
|
| 2018 |
Schulze-Makuch D, Wagner D, Kounaves SP, Mangelsdorf K, Devine KG, de Vera JP, Schmitt-Kopplin P, Grossart HP, Parro V, Kaupenjohann M, Galy A, Schneider B, Airo A, Frösler J, Davila AF, ... ... DiRuggiero J, et al. Transitory microbial habitat in the hyperarid Atacama Desert. Proceedings of the National Academy of Sciences of the United States of America. PMID 29483268 DOI: 10.1073/Pnas.1714341115 |
0.308 |
|
| 2018 |
Gelsinger DR, DiRuggiero J. Transcriptional landscape and regulatory roles of small non-coding RNAs in the oxidative stress response of the haloarchaeon. Journal of Bacteriology. PMID 29463600 DOI: 10.1128/Jb.00779-17 |
0.377 |
|
| 2017 |
Sharma A, Gaidamakova EK, Grichenko O, Matrosova VY, Hoeke V, Klimenkova P, Conze IH, Volpe RP, Tkavc R, Gostinčar C, Gunde-Cimerman N, DiRuggiero J, Shuryak I, Ozarowski A, Hoffman BM, et al. Across the tree of life, radiation resistance is governed by antioxidant Mn(2+), gauged by paramagnetic resonance. Proceedings of the National Academy of Sciences of the United States of America. PMID 29042516 DOI: 10.1073/Pnas.1713608114 |
0.411 |
|
| 2016 |
Goordial J, Davila A, Greer CW, Cannam R, DiRuggiero J, McKay CP, Whyte LG. Comparative activity and functional ecology of permafrost soils and lithic niches in a hyper-arid polar desert. Environmental Microbiology. PMID 27129741 DOI: 10.1111/1462-2920.13353 |
0.312 |
|
| 2016 |
Crits-Christoph A, Robinson CK, Ma B, Ravel J, Wierzchos J, Ascaso C, Artieda O, Souza-Egipsy V, Casero MC, DiRuggiero J. Phylogenetic and Functional Substrate Specificity for Endolithic Microbial Communities in Hyper-Arid Environments. Frontiers in Microbiology. 7: 301. PMID 27014224 DOI: 10.3389/Fmicb.2016.00301 |
0.321 |
|
| 2016 |
Crits-Christoph A, Gelsinger DR, Ma B, Wierzchos J, Ravel J, Davila A, Casero MC, DiRuggiero J. Functional interactions of archaea, bacteria, and viruses in a hypersaline endolithic community. Environmental Microbiology. PMID 26914534 DOI: 10.1111/1462-2920.13259 |
0.342 |
|
| 2015 |
Davila AF, Hawes I, Araya JG, Gelsinger DR, DiRuggiero J, Ascaso C, Osano A, Wierzchos J. In situ metabolism in halite endolithic microbial communities of the hyperarid Atacama Desert. Frontiers in Microbiology. 6: 1035. PMID 26500612 DOI: 10.3389/Fmicb.2015.01035 |
0.301 |
|
| 2015 |
Wierzchos J, DiRuggiero J, Vítek P, Artieda O, Souza-Egipsy V, Škaloud P, Tisza M, Davila AF, Vílchez C, Garbayo I, Ascaso C. Adaptation strategies of endolithic chlorophototrophs to survive the hyperarid and extreme solar radiation environment of the Atacama Desert. Frontiers in Microbiology. 6: 934. PMID 26441871 DOI: 10.3389/Fmicb.2015.00934 |
0.364 |
|
| 2013 |
Webb KM, Yu J, Robinson CK, Noboru T, Lee YC, DiRuggiero J. Effects of intracellular Mn on the radiation resistance of the halophilic archaeon Halobacterium salinarum. Extremophiles : Life Under Extreme Conditions. 17: 485-97. PMID 23532412 DOI: 10.1007/S00792-013-0533-9 |
0.395 |
|
| 2013 |
Webb KM, DiRuggiero J. Erratum to “Role of Mn2+and Compatible Solutes in the Radiation Resistance of Thermophilic Bacteria and Archaea” Archaea. 2013: 1-1. DOI: 10.1155/2013/810286 |
0.302 |
|
| 2012 |
Webb KM, DiRuggiero J. Role of Mn2+ and compatible solutes in the radiation resistance of thermophilic bacteria and archaea. Archaea (Vancouver, B.C.). 2012: 845756. PMID 23209374 DOI: 10.1155/2012/845756 |
0.389 |
|
| 2012 |
Kish A, Diruggiero J. DNA replication and repair in halophiles Advances in Understanding the Biology of Halophilic Microorganisms. 163-198. DOI: 10.1007/978-94-007-5539-0_7 |
0.34 |
|
| 2011 |
Robinson CK, Webb K, Kaur A, Jaruga P, Dizdaroglu M, Baliga NS, Place A, Diruggiero J. A major role for nonenzymatic antioxidant processes in the radioresistance of Halobacterium salinarum. Journal of Bacteriology. 193: 1653-62. PMID 21278285 DOI: 10.1128/Jb.01310-10 |
0.428 |
|
| 2010 |
Kaur A, Van PT, Busch CR, Robinson CK, Pan M, Pang WL, Reiss DJ, DiRuggiero J, Baliga NS. Coordination of frontline defense mechanisms under severe oxidative stress. Molecular Systems Biology. 6: 393. PMID 20664639 DOI: 10.1038/Msb.2010.50 |
0.696 |
|
| 2010 |
Busch CR, DiRuggiero J. MutS and MutL are dispensable for maintenance of the genomic mutation rate in the halophilic archaeon Halobacterium salinarum NRC-1. Plos One. 5: e9045. PMID 20140215 DOI: 10.1371/Journal.Pone.0009045 |
0.684 |
|
| 2009 |
Kish A, Kirkali G, Robinson C, Rosenblatt R, Jaruga P, Dizdaroglu M, Diruggiero J. Salt shield: Intracellular salts provide cellular protection against ionizing radiation in the halophilic archaeon, Halobacterium salinarum NRC-1 Environmental Microbiology. 11: 1066-1078. PMID 19452594 DOI: 10.1111/J.1462-2920.2008.01828.X |
0.728 |
|
| 2008 |
Kish A, Diruggiero J. Rad50 is not essential for the Mre11-dependent repair of DNA double-strand breaks in Halobacterium sp. strain NRC-1 Journal of Bacteriology. 190: 5210-5216. PMID 18502851 DOI: 10.1128/Jb.00292-08 |
0.402 |
|
| 2007 |
Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, ... ... Diruggiero J, et al. A predictive model for transcriptional control of physiology in a free living cell. Cell. 131: 1354-65. PMID 18160043 DOI: 10.1016/J.Cell.2007.10.053 |
0.334 |
|
| 2007 |
Williams E, Lowe TM, Savas J, DiRuggiero J. Microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus exposed to gamma irradiation. Extremophiles : Life Under Extreme Conditions. 11: 19-29. PMID 16896524 DOI: 10.1007/S00792-006-0002-9 |
0.486 |
|
| 2006 |
Whitehead K, Kish A, Pan M, Kaur A, Reiss DJ, King N, Hohmann L, DiRuggiero J, Baliga NS. An integrated systems approach for understanding cellular responses to gamma radiation. Molecular Systems Biology. 2: 47. PMID 16969339 DOI: 10.1038/Msb4100091 |
0.727 |
|
| 2005 |
Kottemann M, Kish A, Iloanusi C, Bjork S, DiRuggiero J. Physiological responses of the halophilic archaeon Halobacterium sp. strain NRC1 to desiccation and gamma irradiation. Extremophiles : Life Under Extreme Conditions. 9: 219-27. PMID 15844015 DOI: 10.1007/S00792-005-0437-4 |
0.717 |
|
| 2004 |
Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J. Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1. Genome Research. 14: 1025-35. PMID 15140832 DOI: 10.1101/Gr.1993504 |
0.473 |
|
| 2002 |
Saffary R, Nandakumar R, Spencer D, Robb FT, Davila JM, Swartz M, Ofman L, Thomas RJ, DiRuggiero J. Microbial survival of space vacuum and extreme ultraviolet irradiation: strain isolation and analysis during a rocket flight. Fems Microbiology Letters. 215: 163-8. PMID 12393217 DOI: 10.1111/J.1574-6968.2002.Tb11386.X |
0.368 |
|
| 2002 |
Ward DE, Revet IM, Nandakumar R, Tuttle JH, de Vos WM, van der Oost J, DiRuggiero J. Characterization of plasmid pRT1 from Pyrococcus sp. strain JT1. Journal of Bacteriology. 184: 2561-6. PMID 11948174 DOI: 10.1128/Jb.184.9.2561-2566.2002 |
0.32 |
|
| 2001 |
Inwood W, Kane S, DiRuggiero J, Robb F, Clark A. The RadB protein from Pyrococcus does not complement E. coli recA mutations in vivo Molecular Genetics and Genomics. 265: 683-686. PMID 11459188 DOI: 10.1007/S004380100463 |
0.34 |
|
| 2000 |
Diruggiero J, Dunn D, Maeder DL, Holley-Shanks R, Chatard J, Horlacher R, Robb FT, Boos W, Weiss RB. Evidence of recent lateral gene transfer among hyperthermophilic archaea. Molecular Microbiology. 38: 684-93. PMID 11115105 DOI: 10.1046/J.1365-2958.2000.02161.X |
0.304 |
|
| 2000 |
Komori K, Miyata T, DiRuggiero J, Holley-Shanks R, Hayashi I, Cann IKO, Mayanagi K, Shinagawa H, Ishino Y. Both RadA and RadB are involved in homologous recombination in Pyrococcus furiosus Journal of Biological Chemistry. 275: 33782-33790. PMID 10903318 DOI: 10.1074/Jbc.M004557200 |
0.38 |
|
| 2000 |
Ravel J, Diruggiero J, Robb FT, Hill RT. Cloning and sequence analysis of the mercury resistance operon of Streptomyces sp. strain CHR28 reveals a novel putative second regulatory gene Journal of Bacteriology. 182: 2345-2349. PMID 10735885 DOI: 10.1128/Jb.182.8.2345-2349.2000 |
0.342 |
|
| 1999 |
DiRuggiero J, Brown JR, Bogert AP, Robb FT. DNA repair systems in archaea: Mementos from the last universal common ancestor? Journal of Molecular Evolution. 49: 474-484. PMID 10486005 DOI: 10.1007/Pl00006570 |
0.421 |
|
| 1997 |
DiRuggiero J, Santangelo N, Nackerdien Z, Ravel J, Robb FT. Repair of extensive ionizing-radiation DNA damage at 95°C in the hyperthermophilic archaeon Pyrococcus furiosus Journal of Bacteriology. 179: 4643-4645. PMID 9226280 DOI: 10.1128/Jb.179.14.4643-4645.1997 |
0.388 |
|
| 1997 |
Borges KM, Bergerat A, Bogert AM, DiRuggiero J, Forterre P, Robb FT. Characterization of the reverse gyrase from the hyperthermophilic archaeon Pyrococcus furiosus. Journal of Bacteriology. 179: 1721-6. PMID 9045834 DOI: 10.1128/Jb.179.5.1721-1726.1997 |
0.334 |
|
| Show low-probability matches. |