| Year |
Citation |
Score |
| 2023 |
Musalgaonkar S, Yelland J, Chitale R, Rao S, Ozadam H, Cenik C, Taylor D, Johnson A. The Ribosome Assembly Factor Reh1 is Released from the Polypeptide Exit Tunnel in the Pioneer Round of Translation. Biorxiv : the Preprint Server For Biology. PMID 37961559 DOI: 10.1101/2023.10.23.563604 |
0.466 |
|
| 2022 |
Yelland JN, Bravo JPK, Black JJ, Taylor DW, Johnson AW. A single 2'-O-methylation of ribosomal RNA gates assembly of a functional ribosome. Nature Structural & Molecular Biology. PMID 36536102 DOI: 10.1038/s41594-022-00891-8 |
0.787 |
|
| 2022 |
Lin R, Correll CC, Johnson AW. In vitro characterization of Dhr1 from Saccharomyces cerevisiae. Methods in Enzymology. 673: 77-101. PMID 35965019 DOI: 10.1016/bs.mie.2022.03.058 |
0.327 |
|
| 2021 |
Black JJ, Johnson AW. Release of the ribosome biogenesis factor Bud23 from small subunit precursors in yeast. Rna (New York, N.Y.). PMID 34934010 DOI: 10.1261/rna.079025.121 |
0.805 |
|
| 2021 |
Black JJ, Johnson AW. Genetics animates structure: leveraging genetic interactions to study the dynamics of ribosome biogenesis. Current Genetics. PMID 33844044 DOI: 10.1007/s00294-021-01187-y |
0.799 |
|
| 2020 |
Black JJ, Sardana R, Elmir EW, Johnson AW. Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae. Plos Genetics. 16: e1009215. PMID 33306676 DOI: 10.1371/journal.pgen.1009215 |
0.828 |
|
| 2019 |
Musalgaonkar S, Black JJ, Johnson AW. The L1 stalk is required for efficient export of nascent large ribosomal subunits in yeast. Rna. 25: 1549-1560. PMID 31439809 DOI: 10.1261/rna.071811.119 |
0.825 |
|
| 2019 |
Musalgaonkar S, Black JJ, Johnson A. The L1 stalk is required for efficient export of nascent large ribosomal subunits in yeast. Rna (New York, N.Y.). PMID 31439809 DOI: 10.1261/Rna.071811.119 |
0.83 |
|
| 2019 |
Black JJ, Musalgaonkar S, Johnson AW. Tsr4 Is a Cytoplasmic Chaperone for the Ribosomal Protein Rps2 in Saccharomyces cerevisiae Molecular and Cellular Biology. 39. PMID 31182640 DOI: 10.1128/MCB.00094-19 |
0.838 |
|
| 2019 |
Black JJ, Musalgaonkar S, Johnson AW. Tsr4 is a cytoplasmic chaperone for the ribosomal protein Rps2 in . Molecular and Cellular Biology. PMID 31182640 DOI: 10.1128/Mcb.00094-19 |
0.843 |
|
| 2019 |
Zhou Y, Musalgaonkar S, Johnson AW, Taylor DW. Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome. Nature Communications. 10: 958. PMID 30814529 DOI: 10.1038/s41467-019-08880-0 |
0.537 |
|
| 2018 |
Black JJ, Wang Z, Goering LM, Johnson AW. Utp14 interaction with the small subunit processome Rna. 24: 1214-1228. PMID 29925570 DOI: 10.1261/rna.066373.118 |
0.817 |
|
| 2018 |
Black JJ, Wang Z, Goering LM, Johnson AW. Utp14 interaction with the Small Subunit Processome. Rna (New York, N.Y.). PMID 29925570 DOI: 10.1261/Rna.066373.118 |
0.824 |
|
| 2017 |
Patchett S, Musalgaonkar S, Malyutin AG, Johnson AW. The T-cell leukemia related rpl10-R98S mutant traps the 60S export adapter Nmd3 in the ribosomal P site in yeast. Plos Genetics. 13: e1006894. PMID 28715419 DOI: 10.1371/Journal.Pgen.1006894 |
0.402 |
|
| 2017 |
Sardana R, Zhu J, Gill M, Johnson AW. Correction for Sardana et al., "Physical and Functional Interaction between the Methyltransferase Bud23 and the Essential DEAH-Box RNA Helicase Ecm16". Molecular and Cellular Biology. 37. PMID 28566453 DOI: 10.1128/Mcb.00164-17 |
0.325 |
|
| 2017 |
Hofman IJ, Patchett S, van Duin M, Geerdens E, Verbeeck J, Michaux L, Delforge M, Sonneveld P, Johnson AW, De Keersmaecker K. Low frequency mutations in ribosomal proteins RPL10 and RPL5 in multiple myeloma. Haematologica. PMID 28428269 DOI: 10.3324/Haematol.2016.162198 |
0.353 |
|
| 2017 |
Malyutin AG, Musalgaonkar S, Patchett S, Frank J, Johnson AW. Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis. The Embo Journal. PMID 28179369 DOI: 10.15252/Embj.201696012 |
0.486 |
|
| 2016 |
Ting YH, Lu TJ, Johnson AW, Shie JT, Chen BR, Kumar S S, Lo KY. Bcp1 is the Nuclear Chaperone of the 60S ribosomal protein Rpl23 in Saccharomyces cerevisiae. The Journal of Biological Chemistry. PMID 27913624 DOI: 10.1074/Jbc.M116.747634 |
0.725 |
|
| 2016 |
Rowley PA, Ho B, Bushong S, Johnson A, Sawyer SL. XRN1 Is a Species-Specific Virus Restriction Factor in Yeasts. Plos Pathogens. 12: e1005890. PMID 27711183 DOI: 10.1371/Journal.Ppat.1005890 |
0.396 |
|
| 2016 |
Zhu J, Liu X, Anjos M, Correll CC, Johnson AW. Utp14 recruits and activates the RNA helicase Dhr1 to undock U3 snoRNA from the pre-ribosome. Molecular and Cellular Biology. PMID 26729466 DOI: 10.1128/Mcb.00773-15 |
0.529 |
|
| 2015 |
Hussmann JA, Patchett S, Johnson A, Sawyer S, Press WH. Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast. Plos Genetics. 11: e1005732. PMID 26656907 DOI: 10.1371/Journal.Pgen.1005732 |
0.39 |
|
| 2015 |
Sardana R, Liu X, Granneman S, Zhu J, Gill M, Papoulas O, Marcotte EM, Tollervey D, Correll CC, Johnson AW. The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot. Plos Biology. 13: e1002083. PMID 25710520 DOI: 10.1371/Journal.Pbio.1002083 |
0.525 |
|
| 2014 |
Merwin JR, Bogar LB, Poggi SB, Fitch RM, Johnson AW, Lycan DE. Genetic analysis of the ribosome biogenesis factor Ltv1 of Saccharomyces cerevisiae. Genetics. 198: 1071-85. PMID 25213169 DOI: 10.1534/Genetics.114.168294 |
0.55 |
|
| 2014 |
Sardana R, Zhu J, Gill M, Johnson AW. Physical and functional interaction between the methyltransferase Bud23 and the essential DEAH-box RNA helicase Ecm16. Molecular and Cellular Biology. 34: 2208-20. PMID 24710271 DOI: 10.1128/Mcb.01656-13 |
0.514 |
|
| 2014 |
Sulimaa SO, Patchett S, Advani VM, De Keersmaecker K, Johnson AW, Dinman JD. Bypass of the pre-60S ribosomal quality control as a pathway to oncogenesis Proceedings of the National Academy of Sciences of the United States of America. 111: 5640-5645. PMID 24706786 DOI: 10.1073/Pnas.1400247111 |
0.667 |
|
| 2014 |
Johnson AW. Ribosomes: Lifting the nuclear export ban Current Biology. 24: R127-R129. PMID 24502790 DOI: 10.1016/j.cub.2013.12.013 |
0.456 |
|
| 2014 |
Sulima SO, Gülay SP, Anjos M, Patchett S, Meskauskas A, Johnson AW, Dinman JD. Eukaryotic rpL10 drives ribosomal rotation Nucleic Acids Research. 42: 2049-2063. PMID 24214990 DOI: 10.1093/Nar/Gkt1107 |
0.647 |
|
| 2013 |
Sardana R, White JP, Johnson AW. The rRNA methyltransferase Bud23 shows functional interaction with components of the SSU processome and RNase MRP Rna. 19: 828-840. PMID 23604635 DOI: 10.1261/Rna.037671.112 |
0.392 |
|
| 2013 |
Hartl TA, Ni J, Cao J, Suyama KL, Patchett S, Bussiere C, Gui DY, Tang S, Kaplan DD, Fish M, Johnson AW, Scott MP. Regulation of ribosome biogenesis by nucleostemin 3 promotes local and systemic growth in Drosophila. Genetics. 194: 101-15. PMID 23436180 DOI: 10.1534/Genetics.112.149104 |
0.403 |
|
| 2013 |
De Keersmaecker K, Atak ZK, Li N, Vicente C, Patchett S, Girardi T, Gianfelici V, Geerdens E, Clappier E, Porcu M, Lahortiga I, Lucà R, Yan J, Hulselmans G, Vranckx H, ... ... Johnson AW, et al. Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia. Nature Genetics. 45: 186-90. PMID 23263491 DOI: 10.1038/Ng.2508 |
0.316 |
|
| 2013 |
Castle CD, Sardana R, Dandekar V, Borgianini V, Johnson AW, Denicourt C. Las1 interacts with Grc3 polynucleotide kinase and is required for ribosome synthesis in Saccharomyces cerevisiae Nucleic Acids Research. 41: 1135-1150. PMID 23175604 DOI: 10.1093/Nar/Gks1086 |
0.508 |
|
| 2012 |
Sardana R, Johnson AW. The methyltransferase adaptor protein Trm112 is involved in biogenesis of both ribosomal subunits Molecular Biology of the Cell. 23: 4313-4322. PMID 22956767 DOI: 10.1091/Mbc.E12-05-0370 |
0.569 |
|
| 2012 |
Bussiere C, Hashem Y, Arora S, Frank J, Johnson AW. Integrity of the P-site is probed during maturation of the 60S ribosomal subunit Journal of Cell Biology. 197: 747-759. PMID 22689654 DOI: 10.1083/Jcb.201112131 |
0.428 |
|
| 2010 |
Lo KY, Li Z, Bussiere C, Bresson S, Marcotte EM, Johnson AW. Defining the pathway of cytoplasmic maturation of the 60S ribosomal subunit. Molecular Cell. 39: 196-208. PMID 20670889 DOI: 10.1016/J.Molcel.2010.06.018 |
0.705 |
|
| 2010 |
Sengupta J, Bussiere C, Pallesen J, West M, Johnson AW, Frank J. Characterization of the nuclear export adaptor protein Nmd3 in association with the 60S ribosomal subunit. The Journal of Cell Biology. 189: 1079-86. PMID 20584915 DOI: 10.1083/Jcb.201001124 |
0.593 |
|
| 2010 |
Fassio CA, Schofield BJ, Seiser RM, Johnson AW, Lycan DE. Dominant mutations in the late 40S biogenesis factor Ltv1 affect cytoplasmic maturation of the small ribosomal subunit in Saccharomyces cerevisiae. Genetics. 185: 199-209. PMID 20215468 DOI: 10.1534/Genetics.110.115584 |
0.625 |
|
| 2010 |
Panse VG, Johnson AW. Maturation of eukaryotic ribosomes: acquisition of functionality. Trends in Biochemical Sciences. 35: 260-6. PMID 20137954 DOI: 10.1016/J.Tibs.2010.01.001 |
0.535 |
|
| 2009 |
Li Z, Lee I, Moradi E, Hung NJ, Johnson AW, Marcotte EM. Rational extension of the ribosome biogenesis pathway using network-guided genetics. Plos Biology. 7: e1000213. PMID 19806183 DOI: 10.1371/Journal.Pbio.1000213 |
0.656 |
|
| 2009 |
Lo KY, Li Z, Wang F, Marcotte EM, Johnson AW. Ribosome stalk assembly requires the dual-specificity phosphatase Yvh1 for the exchange of Mrt4 with P0. The Journal of Cell Biology. 186: 849-62. PMID 19797078 DOI: 10.1083/Jcb.200904110 |
0.731 |
|
| 2009 |
Lo KY, Johnson AW. Reengineering ribosome export. Molecular Biology of the Cell. 20: 1545-54. PMID 19144820 DOI: 10.1091/Mbc.E08-10-1000 |
0.709 |
|
| 2008 |
White J, Li Z, Sardana R, Bujnicki JM, Marcotte EM, Johnson AW. Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits. Molecular and Cellular Biology. 28: 3151-61. PMID 18332120 DOI: 10.1128/Mcb.01674-07 |
0.546 |
|
| 2008 |
Hung NJ, Lo KY, Patel SS, Helmke K, Johnson AW. Arx1 is a nuclear export receptor for the 60S ribosomal subunit in yeast. Molecular Biology of the Cell. 19: 735-44. PMID 18077551 DOI: 10.1091/Mbc.E07-09-0968 |
0.793 |
|
| 2007 |
Hofer A, Bussiere C, Johnson AW. Mutational analysis of the ribosomal protein Rpl10 from yeast. The Journal of Biological Chemistry. 282: 32630-9. PMID 17761675 DOI: 10.1074/Jbc.M705057200 |
0.563 |
|
| 2007 |
West M, Hedges JB, Lo KY, Johnson AW. Novel interaction of the 60S ribosomal subunit export adapter Nmd3 at the nuclear pore complex. The Journal of Biological Chemistry. 282: 14028-37. PMID 17347149 DOI: 10.1074/Jbc.M700256200 |
0.834 |
|
| 2007 |
Meyer AE, Hung NJ, Yang P, Johnson AW, Craig EA. The specialized cytosolic J-protein, Jjj1, functions in 60S ribosomal subunit biogenesis. Proceedings of the National Academy of Sciences of the United States of America. 104: 1558-63. PMID 17242366 DOI: 10.1073/Pnas.0610704104 |
0.755 |
|
| 2006 |
Hedges J, Chen YI, West M, Bussiere C, Johnson AW. Mapping the functional domains of yeast NMD3, the nuclear export adapter for the 60 S ribosomal subunit. The Journal of Biological Chemistry. 281: 36579-87. PMID 17015443 DOI: 10.1074/Jbc.M606798200 |
0.836 |
|
| 2006 |
Hung NJ, Johnson AW. Nuclear recycling of the pre-60S ribosomal subunit-associated factor Arx1 depends on Rei1 in Saccharomyces cerevisiae. Molecular and Cellular Biology. 26: 3718-27. PMID 16648468 DOI: 10.1128/Mcb.26.10.3718-3727.2006 |
0.785 |
|
| 2006 |
Luo W, Johnson AW, Bentley DL. The role of Rat1 in coupling mRNA 3'-end processing to transcription termination: implications for a unified allosteric-torpedo model. Genes & Development. 20: 954-65. PMID 16598041 DOI: 10.1101/Gad.1409106 |
0.401 |
|
| 2005 |
Wang L, Lewis MS, Johnson AW. Domain interactions within the Ski2/3/8 complex and between the Ski complex and Ski7p. Rna (New York, N.Y.). 11: 1291-302. PMID 16043509 DOI: 10.1261/Rna.2060405 |
0.608 |
|
| 2005 |
West M, Hedges JB, Chen A, Johnson AW. Defining the order in which Nmd3p and Rpl10p load onto nascent 60S ribosomal subunits. Molecular and Cellular Biology. 25: 3802-13. PMID 15831484 DOI: 10.1128/Mcb.25.9.3802-3813.2005 |
0.843 |
|
| 2005 |
Hedges J, West M, Johnson AW. Release of the export adapter, Nmd3p, from the 60S ribosomal subunit requires Rpl10p and the cytoplasmic GTPase Lsg1p. The Embo Journal. 24: 567-79. PMID 15660131 DOI: 10.1038/Sj.Emboj.7600547 |
0.853 |
|
| 2003 |
Kallstrom G, Hedges J, Johnson A. The putative GTPases Nog1p and Lsg1p are required for 60S ribosomal subunit biogenesis and are localized to the nucleus and cytoplasm, respectively. Molecular and Cellular Biology. 23: 4344-55. PMID 12773575 DOI: 10.1128/Mcb.23.12.4344-4355.2003 |
0.827 |
|
| 2003 |
Trotta CR, Lund E, Kahan L, Johnson AW, Dahlberg JE. Coordinated nuclear export of 60S ribosomal subunits and NMD3 in vertebrates. The Embo Journal. 22: 2841-51. PMID 12773398 DOI: 10.1093/Emboj/Cdg249 |
0.626 |
|
| 2002 |
Johnson AW, Lund E, Dahlberg J. Nuclear export of ribosomal subunits. Trends in Biochemical Sciences. 27: 580-5. PMID 12417134 DOI: 10.1016/S0968-0004(02)02208-9 |
0.635 |
|
| 2001 |
Johnson AW, Ho JH, Kallstrom G, Trotta C, Lund E, Kahan L, Dahlberg J, Hedges J. Nuclear export of the large ribosomal subunit. Cold Spring Harbor Symposia On Quantitative Biology. 66: 599-605. PMID 12762061 DOI: 10.1101/Sqb.2001.66.599 |
0.81 |
|
| 2000 |
Ho JH, Kallstrom G, Johnson AW. Nascent 60S ribosomal subunits enter the free pool bound by Nmd3p. Rna (New York, N.Y.). 6: 1625-34. PMID 11105761 DOI: 10.1017/S1355838200001291 |
0.839 |
|
| 2000 |
Ho JH, Kallstrom G, Johnson AW. Nmd3p is a Crm1p-dependent adapter protein for nuclear export of the large ribosomal subunit. The Journal of Cell Biology. 151: 1057-66. PMID 11086007 DOI: 10.1083/Jcb.151.5.1057 |
0.841 |
|
| 2000 |
Xue Y, Bai X, Lee I, Kallstrom G, Ho J, Brown J, Stevens A, Johnson AW. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. Molecular and Cellular Biology. 20: 4006-15. PMID 10805743 DOI: 10.1128/Mcb.20.11.4006-4015.2000 |
0.774 |
|
| 2000 |
Brown JT, Bai X, Johnson AW. The yeast antiviral proteins Ski2p, Ski3p, and Ski8p exist as a complex in vivo. Rna (New York, N.Y.). 6: 449-57. PMID 10744028 DOI: 10.1017/S1355838200991787 |
0.51 |
|
| 1999 |
Ho JH, Johnson AW. NMD3 encodes an essential cytoplasmic protein required for stable 60S ribosomal subunits in Saccharomyces cerevisiae. Molecular and Cellular Biology. 19: 2389-99. PMID 10022925 DOI: 10.1128/Mcb.19.3.2389 |
0.598 |
|
| 1998 |
Page AM, Davis K, Molineux C, Kolodner RD, Johnson AW. Mutational analysis of exoribonuclease I from Saccharomyces cerevisiae Nucleic Acids Research. 26: 3707-3716. PMID 9685486 DOI: 10.1093/Nar/26.16.3707 |
0.641 |
|
| 1997 |
Johnson AW. Rat1p and Xrn1p Are Functionally Interchangeable Exoribonucleases That Are Restricted to and Required in the Nucleus and Cytoplasm, Respectively Molecular and Cellular Biology. 17: 6122-6130. PMID 9315672 DOI: 10.1128/Mcb.17.10.6122 |
0.441 |
|
| 1995 |
Heyer WD, Johnson AW, Reinhart U, Kolodner RD. Regulation and intracellular localization of Saccharomyces cerevisiae strand exchange protein 1 (Sep1/Xrn1/Kem1), a multifunctional exonuclease Molecular and Cellular Biology. 15: 2728-2736. PMID 7739553 DOI: 10.1128/Mcb.15.5.2728 |
0.71 |
|
| 1995 |
Johnson AW, Kolodner RD. Synthetic lethality of sep1 (xrn1) ski2 and sep1 (xrn1) ski3 mutants of Saccharomyces cerevisiae is independent of killer virus and suggests a general role for these genes in translation control Molecular and Cellular Biology. 15: 2719-2727. PMID 7739552 DOI: 10.1128/Mcb.15.5.2719 |
0.558 |
|
| 1991 |
Heyer WD, Johnson AW, Norris DN, Tishkoff D, Kolodner RD. Saccharomyces cerevisiae proteins involved in hybrid DNA formation in vitro Biochimie. 73: 269-276. PMID 1883885 DOI: 10.1016/0300-9084(91)90212-J |
0.698 |
|
| 1991 |
Tishkoff DX, Johnson AW, Kolodner RD. Molecular and Genetic Analysis of the Gene Encoding the Saccharomyces cerevisiae Strand Exchange Protein Sep1 Molecular and Cellular Biology. 11: 2593-2608. PMID 1840632 DOI: 10.1128/Mcb.11.5.2593 |
0.615 |
|
| 1990 |
Popoff BC, Spira AI, Johnson AW, Demple B. Yeast structural gene (APN1) for the major apurinic endonuclease: Homology to Escherichia coli endonuclease IV Proceedings of the National Academy of Sciences of the United States of America. 87: 4193-4197. PMID 1693433 DOI: 10.1073/Pnas.87.11.4193 |
0.509 |
|
| 1986 |
Demple B, Johnson A, Fung D. Exonuclease III and endonuclease IV remove 3' blocks from DNA synthesis primers in H2O2-damaged Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 83: 7731-7735. PMID 2429316 DOI: 10.1073/Pnas.83.20.7731 |
0.543 |
|
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