Micah Dunthorn, Ph.D. - Publications

2009 Organismic & Evolutionary Biology University of Massachusetts, Amherst, Amherst, MA 
Microbiology Biology, Virology Biology

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Piredda R, Claverie JM, Decelle J, de Vargas C, Dunthorn M, Edvardsen B, Eikrem W, Forster D, Kooistra WHCF, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, et al. Diatom diversity through HTS-metabarcoding in coastal European seas. Scientific Reports. 8: 18059. PMID 30584235 DOI: 10.1038/s41598-018-36345-9  0.32
2018 Lentendu G, Mahé F, Bass D, Rueckert S, Stoeck T, Dunthorn M. Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists. Molecular Ecology. PMID 29851187 DOI: 10.1111/mec.14731  0.32
2017 Warren A, Patterson DJ, Dunthorn M, Clamp JC, Achilles-Day UE, Aescht E, Al-Farraj SA, Al-Quraishy S, Al-Rasheid K, Carr M, Day JG, Dellinger M, El-Serehy HA, Fan Y, Gao F, et al. Beyond the "Code": A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora). The Journal of Eukaryotic Microbiology. PMID 28061024 DOI: 10.1111/jeu.12391  0.32
2016 Forster D, Dunthorn M, Mahé F, Dolan JR, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Edvardsen B, Egge E, Eikrem W, Gobet A, et al. Benthic protists: the under-charted majority. Fems Microbiology Ecology. PMID 27267932 DOI: 10.1093/femsec/fiw120  0.32
2016 Forster D, Dunthorn M, Stoeck T, Mahé F. Comparison of three clustering approaches for detecting novel environmental microbial diversity. Peerj. 4: e1692. PMID 26966652 DOI: 10.7717/peerj.1692  0.96
2015 Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M. Swarm v2: highly-scalable and high-resolution amplicon clustering. Peerj. 3: e1420. PMID 26713226 DOI: 10.7717/peerj.1420  0.96
2015 Richards TA, Leonard G, Mahé F, Del Campo J, Romac S, Jones MD, Maguire F, Dunthorn M, De Vargas C, Massana R, Chambouvet A. Molecular diversity and distribution of marine fungi across 130 European environmental samples. Proceedings. Biological Sciences / the Royal Society. 282. PMID 26582030 DOI: 10.1098/rspb.2015.2243  0.96
2015 Massana R, Gobet A, Audic S, Bass D, Bittner L, Boutte C, Chambouvet A, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Forn I, Forster D, et al. Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing. Environmental Microbiology. 17: 4035-49. PMID 26119494 DOI: 10.1111/1462-2920.12955  0.32
2015 de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, ... ... Dunthorn M, et al. Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean. Science (New York, N.Y.). 348: 1261605. PMID 25999516 DOI: 10.1126/science.1261605  0.96
2015 Forster D, Bittner L, Karkar S, Dunthorn M, Romac S, Audic S, Lopez P, Stoeck T, Bapteste E. Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms. Bmc Biology. 13: 16. PMID 25762112 DOI: 10.1186/s12915-015-0125-5  0.96
2015 Dunthorn M, Zufall RA, Lobban C. Report of the 2014 joint workshop of the international research coordination network for biodiversity of ciliates and the british society for protist biology. European Journal of Protistology. 51: 118-9. PMID 25721365 DOI: 10.1016/j.ejop.2015.02.001  0.96
2015 Filker S, Gimmler A, Dunthorn M, Mahé F, Stoeck T. Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds. Extremophiles : Life Under Extreme Conditions. 19: 283-95. PMID 25472012 DOI: 10.1007/s00792-014-0713-2  0.96
2015 Mahé F, Mayor J, Bunge J, Chi J, Siemensmeyer T, Stoeck T, Wahl B, Paprotka T, Filker S, Dunthorn M. Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys. The Journal of Eukaryotic Microbiology. 62: 338-45. PMID 25312509 DOI: 10.1111/jeu.12187  0.96
2015 Massana R, Gobet A, Audic S, Bass D, Bittner L, Boutte C, Chambouvet A, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Forn I, Forster D, et al. Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing Environmental Microbiology. DOI: 10.1111/1462-2920.12955  0.96
2015 Dunthorn M, Lipps JH, Dolan JR, Saab MAA, Aescht E, Bachy C, de Cao MSB, Berger H, Bourland WA, Choi JK, Clamp J, Doherty M, Gao F, Gentekaki E, Gong J, et al. Ciliates - Protists with complex morphologies and ambiguous early fossil record Marine Micropaleontology. 119: 1-6. DOI: 10.1016/j.marmicro.2015.05.004  0.96
2014 Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M. Swarm: robust and fast clustering method for amplicon-based studies. Peerj. 2: e593. PMID 25276506 DOI: 10.7717/peerj.593  0.96
2014 Chi J, Parrow MW, Dunthorn M. Cryptic sex in Symbiodinium (Alveolata, Dinoflagellata) is supported by an inventory of meiotic genes. The Journal of Eukaryotic Microbiology. 61: 322-7. PMID 24904932 DOI: 10.1111/jeu.12110  0.96
2014 Dunthorn M, Stoeck T, Clamp J, Warren A, Mahé F. Ciliates and the rare biosphere: a review. The Journal of Eukaryotic Microbiology. 61: 404-9. PMID 24801645 DOI: 10.1111/jeu.12121  0.96
2014 Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahé F, Not F, et al. Patterns of rare and abundant marine microbial eukaryotes. Current Biology : Cb. 24: 813-21. PMID 24704080 DOI: 10.1016/j.cub.2014.02.050  0.96
2014 Filker S, Kaiser M, Rosselló-Móra R, Dunthorn M, Lax G, Stoeck T. "Candidatus Haloectosymbiotes riaformosensis" (Halobacteriaceae), an archaeal ectosymbiont of the hypersaline ciliate Platynematum salinarum. Systematic and Applied Microbiology. 37: 244-51. PMID 24629416 DOI: 10.1016/j.syapm.2014.01.001  0.96
2014 Vďačný P, Breiner HW, Yashchenko V, Dunthorn M, Stoeck T, Foissner W. The chaos prevails: molecular phylogeny of the Haptoria (Ciliophora, Litostomatea). Protist. 165: 93-111. PMID 24524973 DOI: 10.1016/j.protis.2013.11.001  0.96
2014 Dunthorn M, Otto J, Berger SA, Stamatakis A, Mahé F, Romac S, de Vargas C, Audic S, Stock A, Kauff F, Stoeck T. Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context. Molecular Biology and Evolution. 31: 993-1009. PMID 24473288 DOI: 10.1093/molbev/msu055  0.96
2014 Chi J, Mahé F, Loidl J, Logsdon J, Dunthorn M. Meiosis gene inventory of four ciliates reveals the prevalence of a synaptonemal complex-independent crossover pathway. Molecular Biology and Evolution. 31: 660-72. PMID 24336924 DOI: 10.1093/molbev/mst258  0.96
2014 Zhan Z, Stoeck T, Dunthorn M, Xu K. Identification of the pathogenic ciliate Pseudocohnilembus persalinus (Oligohymenophorea: Scuticociliatia) by fluorescence in situ hybridization. European Journal of Protistology. 50: 16-24. PMID 24287159 DOI: 10.1016/j.ejop.2013.09.004  0.96
2014 Foissner W, Bourland WA, Wolf KW, Stoeck T, Dunthorn M. New SSU-rDNA sequences for eleven colpodeans (Ciliophora, Colpodea) and description of Apocyrtolophosis nov. gen. European Journal of Protistology. 50: 40-6. PMID 24210999 DOI: 10.1016/j.ejop.2013.09.003  0.96
2014 Stoeck T, Przybos E, Dunthorn M. The D1-D2 region of the large subunit ribosomal DNA as barcode for ciliates Molecular Ecology Resources. 14: 458-468. PMID 24165195 DOI: 10.1111/1755-0998.12195  0.96
2013 Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J, Del Campo J, Dolan JR, Dunthorn M, Edvardsen B, Holzmann M, et al. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy. Nucleic Acids Research. 41: D597-604. PMID 23193267 DOI: 10.1093/nar/gks1160  0.96
2013 Zhan Z, Xu K, Dunthorn M. Evaluating molecular support for and against the monophyly of the Peritrichia and phylogenetic relationships within the Mobilida (Ciliophora, Oligohymenophorea) Zoologica Scripta. 42: 213-226. DOI: 10.1111/j.1463-6409.2012.00568.x  0.96
2012 Pawlowski J, Audic S, Adl S, Bass D, Belbahri L, Berney C, Bowser SS, Cepicka I, Decelle J, Dunthorn M, Fiore-Donno AM, Gile GH, Holzmann M, Jahn R, Jirků M, et al. CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. Plos Biology. 10: e1001419. PMID 23139639 DOI: 10.1371/journal.pbio.1001419  0.96
2012 Adl SM, Simpson AG, Lane CE, Lukeš J, Bass D, Bowser SS, Brown MW, Burki F, Dunthorn M, Hampl V, Heiss A, Hoppenrath M, Lara E, Le Gall L, Lynn DH, et al. The revised classification of eukaryotes. The Journal of Eukaryotic Microbiology. 59: 429-93. PMID 23020233 DOI: 10.1111/j.1550-7408.2012.00644.x  0.96
2012 Trueba G, Dunthorn M. Many neglected tropical diseases may have originated in the Paleolithic or before: new insights from genetics. Plos Neglected Tropical Diseases. 6: e1393. PMID 22479653 DOI: 10.1371/journal.pntd.0001393  0.96
2012 Huang J, Dunthorn M, Song W. Expanding character sampling for the molecular phylogeny of euplotid ciliates (Protozoa, Ciliophora) using three markers, with a focus on the family Uronychiidae. Molecular Phylogenetics and Evolution. 63: 598-605. PMID 22387189 DOI: 10.1016/j.ympev.2012.02.007  0.96
2012 Dunthorn M, Katz LA, Stoeck T, Foissner W. Congruence and indifference between two molecular markers for understanding oral evolution in the Marynidae sensu lato (Ciliophora, Colpodea). European Journal of Protistology. 48: 297-304. PMID 22356924 DOI: 10.1016/j.ejop.2012.01.007  0.96
2012 Dunthorn M, Klier J, Bunge J, Stoeck T. Comparing the hyper-variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity. The Journal of Eukaryotic Microbiology. 59: 185-7. PMID 22236102 DOI: 10.1111/j.1550-7408.2011.00602.x  0.96
2012 Dunthorn M, Stoeck T, Wolf K, Breiner HW, Foissner W. Diversity and endemism of ciliates inhabiting Neotropical phytotelmata Systematics and Biodiversity. 10: 195-205. DOI: 10.1080/14772000.2012.685195  0.96
2012 Lipps JH, Stoeck T, Dunthorn M. Fossil Tintinnids The Biology and Ecology of Tintinnid Ciliates: Models For Marine Plankton. 186-197. DOI: 10.1002/9781118358092.ch8  0.96
2011 Nebel M, Pfabel C, Stock A, Dunthorn M, Stoeck T. Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences. Environmental Microbiology Reports. 3: 154-8. PMID 23761246 DOI: 10.1111/j.1758-2229.2010.00200.x  0.96
2011 Katz LA, DeBerardinis J, Hall MS, Kovner AM, Dunthorn M, Muse SV. Heterogeneous rates of molecular evolution among cryptic species of the ciliate morphospecies Chilodonella uncinata. Journal of Molecular Evolution. 73: 266-72. PMID 22258433 DOI: 10.1007/s00239-011-9468-x  0.96
2011 Foissner W, Stoeck T, Agatha S, Dunthorn M. Intraclass evolution and classification of the Colpodea (Ciliophora). The Journal of Eukaryotic Microbiology. 58: 397-415. PMID 21762424 DOI: 10.1111/j.1550-7408.2011.00566.x  0.96
2011 Dunthorn M, Foissner W, Katz LA. Expanding character sampling for ciliate phylogenetic inference using mitochondrial SSU-rDNA as a molecular marker. Protist. 162: 85-99. PMID 20708960 DOI: 10.1016/j.protis.2010.06.003  0.96
2010 Yi Z, Dunthorn M, Song W, Stoeck T. Increasing taxon sampling using both unidentified environmental sequences and identified cultures improves phylogenetic inference in the Prorodontida (Ciliophora, Prostomatea). Molecular Phylogenetics and Evolution. 57: 937-41. PMID 20705144 DOI: 10.1016/j.ympev.2010.08.001  0.96
2010 Dunthorn M, Katz LA. Secretive ciliates and putative asexuality in microbial eukaryotes. Trends in Microbiology. 18: 183-8. PMID 20299224 DOI: 10.1016/j.tim.2010.02.005  0.96
2010 Dunthorn M, Lipps JH, Stoeck T. Reassessment of the putative ciliate fossils Eotintinnopsis, Wujiangella, and Yonyangella from the neoproterozoic doushantuo formation in China Acta Protozoologica. 49: 139-144.  0.96
2009 Dunthorn M, Eppinger M, Schwarz MV, Schweikert M, Boenigk J, Katz LA, Stoeck T. Phylogenetic placement of the Cyrtolophosididae Stokes, 1888 (Ciliophora; Colpodea) and neotypification of Aristerostoma marinum Kahl, 1931. International Journal of Systematic and Evolutionary Microbiology. 59: 167-80. PMID 19126743 DOI: 10.1099/ijs.0.000935-0  0.96
2009 Dunthorn M. Foliar anatomy and fiber motifs in Mammea (Clusiaceae, Kielmeyeroideae) Plant Systematics and Evolution. 280: 153-166. DOI: 10.1007/s00606-009-0174-8  0.96
2008 Dunthorn M, Foissner W, Katz LA. Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling. Molecular Phylogenetics and Evolution. 46: 316-27. PMID 17920937 DOI: 10.1016/j.ympev.2007.08.006  0.96
2007 Patterson DJ, Bhattacharya D, Cole J, Dunthorn M, Logsdon J, Katz L, Parfrey LW. Classifying protists Microbiology Today. 34: 44.  0.96
2006 Parfrey LW, Barbero E, Lasser E, Dunthorn M, Bhattacharya D, Patterson DJ, Katz LA. Evaluating support for the current classification of eukaryotic diversity. Plos Genetics. 2: e220. PMID 17194223 DOI: 10.1371/journal.pgen.0020220  0.96
2004 Dunthorn M. Cryptic dioecy in Mammea (Clusiaceae) Plant Systematics and Evolution. 249: 191-196. DOI: 10.1007/s00606-004-0184-5  0.96
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