James B. Cotner - Publications

Affiliations: 
Ecology, Evolution and Behavior University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Ecology Biology, Biogeochemistry, Limnology Biology

79 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Godwin CM, Cotner JB. What intrinsic and extrinsic factors explain the stoichiometric diversity of aquatic heterotrophic bacteria? The Isme Journal. PMID 29171840 DOI: 10.1038/Ismej.2017.195  1
2017 Phillips KN, Godwin CM, Cotner JB. The Effects of Nutrient Imbalances and Temperature on the Biomass Stoichiometry of Freshwater Bacteria. Frontiers in Microbiology. 8: 1692. PMID 28943865 DOI: 10.3389/Fmicb.2017.01692  1
2017 Jeyasingh PD, Goos JM, Thompson SK, Godwin CM, Cotner JB. Ecological Stoichiometry beyond Redfield: An Ionomic Perspective on Elemental Homeostasis. Frontiers in Microbiology. 8: 722. PMID 28487686 DOI: 10.3389/Fmicb.2017.00722  1
2016 Godwin CM, Whitaker EA, Cotner JB. Growth rate and resource imbalance interactively control biomass stoichiometry and elemental quotas of aquatic bacteria. Ecology. PMID 27995610 DOI: 10.1002/Ecy.1705  1
2016 Pan T, Gladen K, Duncan EC, Cotner S, Cotner JB, McEwen DC, Wisenden BD. Bold, Sedentary Fathead Minnows Have More Parasites. Zebrafish. PMID 27093037 DOI: 10.1089/Zeb.2015.1185  1
2016 Staley C, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. Sediments and Soils Act as Reservoirs for Taxonomic and Functional Bacterial Diversity in the Upper Mississippi River. Microbial Ecology. PMID 26879939 DOI: 10.1007/S00248-016-0729-5  1
2016 Hall EK, Schoolmaster DR, Amado AM, Stets EG, Lennon JT, Domine LM, Cotner JB. Scaling relationships among drivers of aquatic respiration in temperate lakes: From the smallest to the largest freshwater ecosystems Inland Waters. 6: 1-10. DOI: 10.5268/Iw-6.1.839  1
2015 Staley C, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. High-throughput functional screening reveals low frequency of antibiotic resistance genes in DNA recovered from the Upper Mississippi River. Journal of Water and Health. 13: 693-703. PMID 26322755 DOI: 10.2166/Wh.2014.215  1
2015 Staley C, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. Evaluation of water sampling methodologies for amplicon-based characterization of bacterial community structure. Journal of Microbiological Methods. 114: 43-50. PMID 25956022 DOI: 10.1016/J.Mimet.2015.05.003  1
2015 Godwin CM, Cotner JB. Aquatic heterotrophic bacteria have highly flexible phosphorus content and biomass stoichiometry. The Isme Journal. PMID 25798755 DOI: 10.1038/Ismej.2015.34  1
2015 Godwin CM, Cotner JB. Stoichiometric flexibility in diverse aquatic heterotrophic bacteria is coupled to differences in cellular phosphorus quotas. Frontiers in Microbiology. 6: 159. PMID 25774154 DOI: 10.3389/Fmicb.2015.00159  1
2015 Staley C, Johnson D, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. Frequencies of heavy metal resistance are associated with land cover type in the Upper Mississippi River. The Science of the Total Environment. 511: 461-8. PMID 25569582 DOI: 10.1016/J.Scitotenv.2014.12.069  1
2015 Staley C, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. Species sorting and seasonal dynamics primarily shape bacterial communities in the Upper Mississippi River. The Science of the Total Environment. 505: 435-45. PMID 25461045 DOI: 10.1016/J.Scitotenv.2014.10.012  1
2015 Amado AM, Cotner JB, Cory RM, Edhlund BL, McNeill K. Disentangling the Interactions Between Photochemical and Bacterial Degradation of Dissolved Organic Matter: Amino Acids Play a Central Role Microbial Ecology. 69: 554-566. DOI: 10.1007/s00248-014-0512-4  1
2014 Rocca JD, Hall EK, Lennon JT, Evans SE, Waldrop MP, Cotner JB, Nemergut DR, Graham EB, Wallenstein MD. Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed. The Isme Journal. PMID 25535936 DOI: 10.1038/Ismej.2014.252  1
2014 Staley C, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. Bacterial community structure is indicative of chemical inputs in the Upper Mississippi River. Frontiers in Microbiology. 5: 524. PMID 25339945 DOI: 10.3389/Fmicb.2014.00524  1
2014 Bellinger BJ, Van Mooy BAS, Cotner JB, Fredricks HF, Benitez-Nelson CR, Thompson J, Cotter A, Knuth ML, Godwin CM. Physiological modifications of seston in response to physicochemical gradients within Lake Superior Limnology and Oceanography. 59: 1011-1026. DOI: 10.4319/Lo.2014.59.3.1011  1
2014 Godwin CM, Cotner JB. Carbon:phosphorus homeostasis of aquatic bacterial assemblages is mediated by shifts in assemblage composition Aquatic Microbial Ecology. 73: 245-258. DOI: 10.3354/Ame01719  1
2014 Winemiller KO, Montaña CG, Roelke DL, Cotner JB, Montoya JV, Sanchez L, Castillo MM, Layman CA. Pulsing hydrology determines top-down control of basal resources in a tropical river-floodplain ecosystem Ecological Monographs. 84: 621-635. DOI: 10.1890/13-1822.1  1
2014 Small GE, Cotner JB, Finlay JC, Stark RA, Sterner RW. Nitrogen transformations at the sediment-water interface across redox gradients in the Laurentian Great Lakes Hydrobiologia. 731: 95-108. DOI: 10.1007/S10750-013-1569-7  1
2013 Staley C, Unno T, Gould TJ, Jarvis B, Phillips J, Cotner JB, Sadowsky MJ. Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River. Journal of Applied Microbiology. 115: 1147-58. PMID 23924231 DOI: 10.1111/Jam.12323  1
2013 Amado AM, Meirelles-Pereira F, Vidal LO, Sarmento H, Suhett AL, Farjalla VF, Cotner JB, Roland F. Tropical freshwater ecosystems have lower bacterial growth efficiency than temperate ones. Frontiers in Microbiology. 4: 167. PMID 23801986 DOI: 10.3389/Fmicb.2013.00167  1
2013 Hobbs WO, Engstrom DR, Scottler SP, Zimmer KD, Cotner JB. Estimating modern carbon burial rates in lakes using a single sediment sample Limnology and Oceanography: Methods. 11: 316-326. DOI: 10.4319/Lom.2013.11.316  1
2012 Theissen KM, Hobbs WO, Hobbs JM, Zimmer KD, Domine LM, Cotner JB, Sugita S. The altered ecology of Lake Christina: a record of regime shifts, land-use change, and management from a temperate shallow lake. The Science of the Total Environment. 433: 336-46. PMID 22819884 DOI: 10.1016/J.Scitotenv.2012.06.068  1
2012 Peterson BM, McNally AM, Cory RM, Thoemke JD, Cotner JB, McNeill K. Spatial and temporal distribution of singlet oxygen in Lake Superior. Environmental Science & Technology. 46: 7222-9. PMID 22703113 DOI: 10.1021/Es301105E  1
2012 Scott JT, Cotner JB, Lapara TM. Variable stoichiometry and homeostatic regulation of bacterial biomass elemental composition. Frontiers in Microbiology. 3: 42. PMID 22371708 DOI: 10.3389/Fmicb.2012.00042  1
2011 Cotner JB, Hall EK. Comment on "A bacterium that can grow by using arsenic instead of phosphorus". Science (New York, N.Y.). 332: 1149; author reply 1. PMID 21622705 DOI: 10.1126/Science.1201943  1
2010 Cotner JB, Hall EK, Scott JT, Heldal M. Freshwater Bacteria are Stoichiometrically Flexible with a Nutrient Composition Similar to Seston. Frontiers in Microbiology. 1: 132. PMID 21687767 DOI: 10.3389/Fmicb.2010.00132  1
2009 Cory RM, Cotner JB, McNeill K. Quantifying interactions between singlet oxygen and aquatic fulvic acids. Environmental Science & Technology. 43: 718-23. PMID 19245007 DOI: 10.1021/Es801847G  1
2009 Tranvik LJ, Downing JA, Cotner JB, Loiselle SA, Striegl RG, Ballatore TJ, Dillon P, Finlay K, Fortino K, Knoll LB, Kortelainen PL, Kutser T, Larsen S, Laurion I, Leech DM, et al. Lakes and reservoirs as regulators of carbon cycling and climate Limnology and Oceanography. 54: 2298-2314. DOI: 10.4319/Lo.2009.54.6_Part_2.2298  1
2008 Boreen AL, Edhlund BL, Cotner JB, McNeill K. Indirect photodegradation of dissolved free amino acids: the contribution of singlet oxygen and the differential reactivity of DOM from various sources. Environmental Science & Technology. 42: 5492-8. PMID 18754466 DOI: 10.1021/Es800185D  1
2008 Zhang Z, Pendse ND, Phillips KN, Cotner JB, Khodursky A. Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803. Bmc Genomics. 9: 344. PMID 18644144 DOI: 10.1186/1471-2164-9-344  1
2008 Hall EK, Neuhauser C, Cotner JB. Toward a mechanistic understanding of how natural bacterial communities respond to changes in temperature in aquatic ecosystems. The Isme Journal. 2: 471-81. PMID 18256701 DOI: 10.1038/Ismej.2008.9  1
2008 Stets EG, Cotner JB. The influence of dissolved organic carbon on bacterial phosphorus uptake and bacteria-phytoplankton dynamics in two Minnesota lakes Limnology and Oceanography. 53: 137-147. DOI: 10.4319/Lo.2008.53.1.0137  1
2008 Johengen TH, Biddanda BA, Cotner JB. Stimulation of Lake Michigan plankton metabolism by sediment resuspension and river runoff Journal of Great Lakes Research. 34: 213-227. DOI: 10.3394/0380-1330(2008)34[213:Solmpm]2.0.Co;2  1
2008 Stets EG, Cotner JB. Littoral zones as sources of biodegradable dissolved organic carbon in lakes Canadian Journal of Fisheries and Aquatic Sciences. 65: 2454-2460. DOI: 10.1139/F08-142  1
2008 Kerfoot WC, Budd JW, Green SA, Cotner JB, Biddanda BA, Schwab DJ, Vanderploeg HA. Doughnut in the desert: Late-winter production pulse in southern Lake Michigan Limnology and Oceanography. 53: 589-604.  1
2007 Amado AM, Cotner JB, Suhett AL, Esteves FDA, Bozelli RL, Farjalla VF. Contrasting interactions mediate dissolved organic matter decomposition in tropical aquatic ecosystems Aquatic Microbial Ecology. 49: 25-34. DOI: 10.3354/Ame01131  1
2007 Hall EK, Cotner JB. Interactive effect of temperature and resources on carbon cycling by freshwater bacterioplankton communities Aquatic Microbial Ecology. 49: 35-45. DOI: 10.3354/Ame01124  1
2006 Cotner JB, Makino W, Biddanda BA. Temperature affects stoichiometry and biochemical composition of Escherichia coli. Microbial Ecology. 52: 26-33. PMID 16767523 DOI: 10.1007/S00248-006-9040-1  1
2006 Winemiller KO, Montoya JV, Roelke DL, Layman CA, Cotner JB. Seasonally varying impact of detritivorous fishes on the benthic ecology of a tropical floodplain river Journal of the North American Benthological Society. 25: 250-262. DOI: 10.1899/0887-3593(2006)25[250:Sviodf]2.0.Co;2  1
2006 Roelke DL, Cotner JB, Montoya JV, Del Castillo CE, Davis SE, Snider JA, Gable GM, Winemiller KO. Optically determined sources of allochthonous organic matter and metabolic characterizations in a tropical oligotrophic river and associated lagoon Journal of the North American Benthological Society. 25: 185-197. DOI: 10.1899/0887-3593(2006)25[185:Odsoao]2.0.Co;2  1
2006 Cotner JB, Montoya JV, Roelke DL, Winemiller KO. Seasonally variable riverine production in the Venezuelan llanos Journal of the North American Benthological Society. 25: 171-184. DOI: 10.1899/0887-3593(2006)25[171:Svrpit]2.0.Co;2  1
2006 Montoya JV, Roelke DL, Winemiller KO, Cotner JB, Snider JA. Hydrological seasonality and benthic algal biomass in a Neotropical floodplain river Journal of the North American Benthological Society. 25: 157-170. DOI: 10.1899/0887-3593(2006)25[157:Hsabab]2.0.Co;2  1
2005 Hudson MJ, Swackhamer DL, Cotner JB. Effect of microbes on contaminant transfer in the Lake Superior food web. Environmental Science & Technology. 39: 9500-8. PMID 16475328 DOI: 10.1021/Es0506096  1
2005 Weider LJ, Elser JJ, Crease TJ, Mateos M, Cotner JB, Markow TA. The functional significance of ribosomal (r)DNA variation: Impacts on the evolutionary ecology of organisms Annual Review of Ecology, Evolution, and Systematics. 36: 219-242. DOI: 10.1146/Annurev.Ecolsys.36.102003.152620  1
2004 Makino W, Cotner JB. Elemental stoichiometry of a heterotrophic bacterial community in a freshwater lake: Implications for growth- and resource-dependent variations Aquatic Microbial Ecology. 34: 33-41. DOI: 10.3354/Ame034033  1
2004 Cotner JB, Biddanda BA, Makino W, Stets E. Organic carbon biogeochemistry of Lake Superior Aquatic Ecosystem Health and Management. 7: 451-464. DOI: 10.1080/14634980490513292  1
2004 Bergstedt MS, Hondzo MM, Cotner JB. Effects of small scale fluid motion on bacterial growth and respiration Freshwater Biology. 49: 28-40. DOI: 10.1046/J.1365-2426.2003.01162.X  1
2004 Chen C, Wang L, Qi J, Liu H, Budd JW, Schwab DJ, Beletsky D, Vanderploeg H, Eadie B, Johengen T, Cotner J, Lavrentyev PJ. A modeling study of benthic detritus flux's impacts on heterotrophic processes in Lake Michigan Journal of Geophysical Research C: Oceans. 109: C10S11 1-13. DOI: 10.1029/2002Jc001689  1
2004 Chen C, Wang L, Ji R, Budd JW, Schwab DJ, Beletsky D, Fahnenstiel GL, Vanderploeg H, Eadie B, Cotner J. Impacts of suspended sediment on the ecosystem in Lake Michigan: A comparison between the 1998 and 1999 plume events Journal of Geophysical Research C: Oceans. 109: C10S05 1-18. DOI: 10.1029/2002Jc001687  1
2004 Gardner WS, Lavrentyev PJ, Cavaletto JF, McCarthy MJ, Eadie BJ, Johengen TH, Cotner JB. Distribution and dynamics of nitrogen and microbial plankton in southern Lake Michigan during spring transition 1999-2000 Journal of Geophysical Research C: Oceans. 109: C03007 1-16. DOI: 10.1029/2002Jc001588  1
2004 Cotner JB, Suplee MW, Chen NW, Shormann DE. Nutrient, sulfur and carbon dynamics in a hypersaline lagoon Estuarine, Coastal and Shelf Science. 59: 639-652. DOI: 10.1016/J.Ecss.2003.11.008  1
2003 Elser JJ, Acharya K, Kyle M, Cotner J, Makino W, Markow T, Watts T, Hobbie S, Fagan W, Schade J, Hood J, Sterner RW. Growth rate-stoichiometry couplings in diverse biota Ecology Letters. 6: 936-943. DOI: 10.1046/J.1461-0248.2003.00518.X  1
2003 Woods HA, Makino W, Cotner JB, Hobbie SE, Harrison JF, Acharya K, Elser JJ. Temperature and the chemical composition of poikilothermic organisms Functional Ecology. 17: 237-245. DOI: 10.1046/J.1365-2435.2003.00724.X  1
2003 Makino W, Cotner JB, Sterner RW, Elser JJ. Are bacteria more like plants or animals? Growth rate and resource dependence of bacterial C:N:P stoichiometry Functional Ecology. 17: 121-130. DOI: 10.1046/J.1365-2435.2003.00712.X  1
2003 Ammerman JW, Hood RR, Case DA, Cotner JB. Phosphorus deficiency in the Atlantic: An emerging paradigm in oceanography Eos. 84: 165+170. DOI: 10.1029/2003Eo180001  1
2003 Biddanda BA, Cotner JB. Enhancement of dissolved organic matter bioavailability by sunlight and its role in the carbon cycle of Lakes Superior and Michigan Journal of Great Lakes Research. 29: 228-241. DOI: 10.1016/S0380-1330(03)70429-8  1
2002 Suplee MW, Cotner JB. An evaluation of the importance of sulfate reduction and temperature to P fluxes from aerobic-surfaced, lacustrine sediments Biogeochemistry. 61: 199-228. DOI: 10.1023/A:1020291130333  1
2002 Ji R, Chen C, Budd JW, Schwab DJ, Beletsky D, Fahnenstiel GL, Johengen TH, Vanderploeg H, Eadie B, Cotner J, Gardner W, Bundy M. Influences of suspended sediments on the ecosystem in Lake Michigan: A 3-D coupled bio-physical modeling experiment Ecological Modelling. 152: 169-190. DOI: 10.1016/S0304-3800(02)00027-3  1
2002 Chen C, Ji R, Schwab DJ, Beletsky D, Fahnenstiel GL, Jiang M, Johengen TH, Vanderploeg H, Eadie B, Budd JW, Bundy MH, Gardner W, Cotner J, Lavrentyev PJ. A model study of the coupled biological and physical dynamics in Lake Michigan Ecological Modelling. 152: 145-168. DOI: 10.1016/S0304-3800(02)00026-1  1
2002 Biddanda BA, Cotner JB. Love handles in aquatic ecosystems: The role of dissolved organic carbon drawdown, resuspended sediments, and terrigenous inputs in the carbon balance of Lake Michigan Ecosystems. 5: 431-445. DOI: 10.1007/S10021-002-0163-Z  1
2002 Cotner JB, Biddanda BA. Small players, large role: Microbial influence on biogeochemical processes in pelagic aquatic ecosystems Ecosystems. 5: 105-121. DOI: 10.1007/S10021-001-0059-3  1
2001 Cotner JB, Ogdahl ML, Biddanda BA. Double-stranded DNA measurement in lakes with the fluorescent stain PicoGreen and the application to bacterial bioassays Aquatic Microbial Ecology. 25: 65-74. DOI: 10.3354/Ame025065  1
2001 Gardner WS, Yang L, Cotner JB, Johengen TH, Lavrentyev PJ. Nitrogen dynamics in sandy freshwater sediments (Saginaw Bay, Lake Huron) Journal of Great Lakes Research. 27: 84-97. DOI: 10.1016/S0380-1330(01)70624-7  1
2000 Cotner JB, Johengen TH, Biddanda BA. Intense winter heterotrophic production stimulated by benthic resuspension Limnology and Oceanography. 45: 1672-1676. DOI: 10.4319/Lo.2000.45.7.1672  1
2000 Cotner JB, Sada RH, Bootsma H, Johengen T, Cavaletto JF, Gardner WS. Nutrient limitation of heterotrophic bacteria in Florida Bay Estuaries. 23: 611-620. DOI: 10.2307/1352888  1
2000 Winemiller KO, Tarim S, Shormann D, Cotner JB. Fish assemblage structure in relation to environmental variation among Brazos River oxbow lakes Transactions of the American Fisheries Society. 129: 451-468. DOI: 10.1577/1548-8659(2000)129<0451:Fasirt>2.0.Co;2  1
2000 Elser JJ, Sterner RW, Gorokhova E, Fagan WF, Markow TA, Cotner JB, Harrison JF, Hobbie SE, Odell GM, Weider LW. Biological stoichiometry from genes to ecosystems Ecology Letters. 3: 540-550. DOI: 10.1046/J.1461-0248.2000.00185.X  1
1998 Moore CK, Cotner JB. Zooplankton community structure of Lake Livingston, Texas, as related to paddlefish food resources Journal of Freshwater Ecology. 13: 115-128. DOI: 10.1080/02705060.1998.9663597  1
1997 Gardner WS, Cavaletto JF, Cotner JB, Johnson JR. Effects of natural light on nitrogen cycling rates in the Mississippi River plume Limnology and Oceanography. 42: 273-281. DOI: 10.4319/Lo.1997.42.2.0273  1
1997 Cotner JB, Ammerman JW, Peele ER, Bentzen E. Phosphorus-limited bacterioplankton growth in the Sargasso Sea Aquatic Microbial Ecology. 13: 141-149. DOI: 10.3354/Ame013141  1
1996 Suplee MW, Cotner JB. Temporal changes in oxygen demand and bacterial sulfate reduction in inland shrimp ponds Aquaculture. 145: 141-158. DOI: 10.1016/S0044-8486(96)01339-7  1
1996 Gardner WS, Benner R, Amon RMW, Cotner JB, Cavaletto JF, Johnson JR. Effects of high-molecular-weight dissolved organic matter on nitrogen dynamics in the Mississippi River plume Marine Ecology Progress Series. 133: 287-297.  1
1994 Gardner WS, Cotner JB, Eadie BJ, Cavaletto JF, Benner R, Chin-Leo G. Mineralization of organic material and bacterial dynamics in Mississippi River plume water Estuaries. 17: 816-828. DOI: 10.1007/BF02690118  1
1993 Cotner JB, Gardner WS. Heterotrophic bacterial mediation of ammonium and dissolved free amino acid fluxes in the Mississippi River plume Marine Ecology Progress Series. 93: 75-87. DOI: 10.3354/Meps093075  1
1993 Gardner WS, Cotner JB, Herche LR. Chromatographic measurement of nitrogen mineralization rates in marine coastal waters with 15N Marine Ecology Progress Series. 93: 65-73.  1
1991 Cotner JB, Wetzel RG. 5'-Nucleotidase activity in a eutrophic lake and an oligotrophic lake Applied and Environmental Microbiology. 57: 1306-1312.  1
1990 Cotner JB, Heath RT. Iron redox effects on photosensitive phosphorus release from dissolved humic materials Limnology & Oceanography. 35: 1175-1181.  1
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