Jennifer H. Wisecaver, Ph.D. - Related publications

2012 Ecology & Evolutionary Biology University of Arizona, Tucson, AZ 
Evolution and Development Biology, Bioinformatics Biology, Molecular Biology, Genetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Zhang YM, Chen M, Sun L, Wang Y, Yin J, Liu J, Sun XQ, Hang YY. Genome-Wide Identification and Evolutionary Analysis of Genes From . Frontiers in Genetics. 11: 484. PMID 32457809 DOI: 10.3389/fgene.2020.00484   
2020 Shi J, Wan H, Zai W, Xiong Z, Wu W. Phylogenetic Relationship of Plant Genes and Transcriptional Response of Genes to in Tomato. Genes. 11. PMID 32365643 DOI: 10.3390/genes11050487   
2020 Heames B, Schmitz J, Bornberg-Bauer E. A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila. Journal of Molecular Evolution. PMID 32253450 DOI: 10.1007/s00239-020-09939-z   
2020 Song N, Geng Y, Li X. The Mitochondrial Genome of the Phytopathogenic Fungus and the Utility of Mitochondrial Genome to Infer Phylogeny of Dothideomycetes. Frontiers in Microbiology. 11: 863. PMID 32457727 DOI: 10.3389/fmicb.2020.00863   
2020 Xu Z, Li N, Guo Y, Feng Y, Xiao L. Comparative genomic analysis of three intestinal species reveals reductions in secreted pathogenesis determinants in bovine-specific and non-pathogenic species. Microbial Genomics. PMID 32416746 DOI: 10.1099/mgen.0.000379   
2020 Shafiei-Koij F, Ravichandran S, Barthet VJ, Rodrigue N, Mirlohi A, Majidi MM, Cloutier S. Evolution of species revealed through sequence analyses of the gene family. Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 26: 419-432. PMID 32205920 DOI: 10.1007/s12298-019-00739-4   
2020 Moulana A, Anderson RE, Fortunato CS, Huber JA. Selection Is a Significant Driver of Gene Gain and Loss in the Pangenome of the Bacterial Genus in Geographically Distinct Deep-Sea Hydrothermal Vents. Msystems. 5. PMID 32291353 DOI: 10.1128/mSystems.00673-19   
2020 Wang M, Zhu H, Kong Z, Li T, Ma L, Liu D, Shen Q. Pan-Genome Analyses of spp. Reveal Genetic Characteristics and Composting Potential. International Journal of Molecular Sciences. 21. PMID 32403359 DOI: 10.3390/ijms21093393   
2020 Chang J, Wang R, Yu K, Zhang T, Chen X, Liu Y, Shi R, Wang X, Xia Q, Ma S. Genome-wide CRISPR screening reveals genes essential for cell viability and resistance to abiotic and biotic stresses in . Genome Research. PMID 32424075 DOI: 10.1101/gr.249045.119   
2020 Zhao N, Li D, Guo BJ, Tao X, Lin X, Yan SZ, Chen SL. Genome Sequencing and Analysis of the Hypocrellin-Producing Fungus S4201. Frontiers in Microbiology. 11: 643. PMID 32373091 DOI: 10.3389/fmicb.2020.00643   
2020 Zhao Y, Wang J, Chen J, Zhang X, Guo M, Yu G. A Literature Review of Gene Function Prediction by Modeling Gene Ontology. Frontiers in Genetics. 11: 400. PMID 32391061 DOI: 10.3389/fgene.2020.00400   
2020 Esch R, Merkl R. Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products. Bmc Bioinformatics. 21: 5. PMID 31900122 DOI: 10.1186/s12859-019-3200-z   
2020 Bhardwaj V, Franceschetti M, Rao R, Pevzner PA, Safonova Y. Automated analysis of immunosequencing datasets reveals novel immunoglobulin D genes across diverse species. Plos Computational Biology. 16: e1007837. PMID 32339161 DOI: 10.1371/journal.pcbi.1007837   
2020 Monnahan PJ, Michno JM, O'Connor C, Brohammer AB, Springer NM, McGaugh SE, Hirsch CN. Using multiple reference genomes to identify and resolve annotation inconsistencies. Bmc Genomics. 21: 281. PMID 32264824 DOI: 10.1186/s12864-020-6696-8   
2020 Meng F, Pan Y, Wang J, Yu J, Liu C, Zhang Z, Wei C, Guo H, Wang X. Cotton Duplicated Genes Produced by Polyploidy Show Significantly Elevated and Unbalanced Evolutionary Rates, Overwhelmingly Perturbing Gene Tree Topology. Frontiers in Genetics. 11: 239. PMID 32391043 DOI: 10.3389/fgene.2020.00239   
2020 Hu MJ, Sun WH, Tsai WC, Xiang S, Lai XK, Chen DQ, Liu XD, Wang YF, Le YX, Chen SM, Zhang DY, Yu X, Hu WQ, Zhou Z, Chen YQ, et al. Chromosome-scale assembly of the genome. Horticulture Research. 7: 75. PMID 32377365 DOI: 10.1038/s41438-020-0300-x   
2020 Cai G, Scofield SR. Mitochondrial genome sequence of Phytophthora sansomeana and comparative analysis of Phytophthora mitochondrial genomes. Plos One. 15: e0231296. PMID 32407378 DOI: 10.1371/journal.pone.0231296   
2020 Fernández R, Marcet-Houben M, Legeai F, Richard G, Robin S, Wucher V, Pegueroles C, Gabaldón T, Tagu D. Selection following gene duplication shapes recent genome evolution in the pea aphid Acyrthosiphon pisum. Molecular Biology and Evolution. PMID 32359152 DOI: 10.1093/molbev/msaa110   
2020 Tan QW, Goh W, Mutwil M. LSTrAP-Cloud: A User-Friendly Cloud Computing Pipeline to Infer Coexpression Networks. Genes. 11. PMID 32316247 DOI: 10.3390/genes11040428   
2020 Li XC, Kang KC, Huang XZ, Fan YB, Song MM, Huang YJ, Ding JJ. [Genome-wide identification, phylogenetic analysis and expression profiling of the MKK gene family in ]. Yi Chuan = Hereditas. 42: 403-421. PMID 32312709 DOI: 10.16288/j.yczz.19-388   
2020 Alves LQ, Ruivo R, Fonseca MM, Lopes-Marques M, Ribeiro P, Castro LFC. PseudoChecker: an integrated online platform for gene inactivation inference. Nucleic Acids Research. PMID 32449938 DOI: 10.1093/nar/gkaa408   
2020 Vegesna R, Tomaszkiewicz M, Ryder OA, Campos-Sánchez R, Medvedev P, DeGiorgio M, Makova KD. Ampliconic genes on the great ape Y chromosomes: Rapid evolution of copy number but conservation of expression levels. Genome Biology and Evolution. PMID 32374870 DOI: 10.1093/gbe/evaa088   
2020 Begum Y, Mondal SK. Comprehensive study of the genes involved in chlorophyll synthesis and degradation pathways in some monocot and dicot plant species. Journal of Biomolecular Structure & Dynamics. 1-28. PMID 32292132 DOI: 10.1080/07391102.2020.1748717   
2020 Liang L, Zheng X, Fan W, Chen D, Huang Z, Peng J, Zhu J, Tang W, Chen Y, Xue T. Genome and Transcriptome Analyses Provide Insight Into the Omega-3 Long-Chain Polyunsaturated Fatty Acids Biosynthesis of SR21. Frontiers in Microbiology. 11: 687. PMID 32373097 DOI: 10.3389/fmicb.2020.00687   
2020 Yuan XL, Cao M, Shen GM, Zhang HB, Du YM, Zhang ZF, Li Q, Gao JM, Xue L, Wang ZP, Zhang P. Characterization of Nuclear and Mitochondrial Genomes of Two Tobacco Endophytic Fungi and and Their Contributions to Phylogenetic Implications in the Pleosporales. International Journal of Molecular Sciences. 21. PMID 32252284 DOI: 10.3390/ijms21072461   
2020 Yang Y, Liu H, Qi L, Kong L, Li Q. Complete Mitochondrial Genomes of Two Toxin-Accumulated Nassariids (Neogastropoda: Nassariidae: ) and Their Implication for Phylogeny. International Journal of Molecular Sciences. 21. PMID 32429583 DOI: 10.3390/ijms21103545   
2020 Giorgianni MW, Dowell NL, Griffin S, Kassner VA, Selegue JE, Carroll SB. The origin and diversification of a novel protein family in venomous snakes. Proceedings of the National Academy of Sciences of the United States of America. PMID 32366667 DOI: 10.1073/pnas.1920011117   
2020 Wang JH, He GC, Huang YT, Liu PY. Comparative Genomics Reveals Pathogenicity-Related Loci in . The Canadian Journal of Infectious Diseases & Medical Microbiology = Journal Canadien Des Maladies Infectieuses Et De La Microbiologie Medicale. 2020: 9205197. PMID 32318128 DOI: 10.1155/2020/9205197   
2020 Jiang W, Yin J, Zhang H, He Y, Shuai S, Chen S, Cao S, Li W, Ma D, Chen H. Genome-wide identification, characterization analysis and expression profiling of auxin-responsive GH3 family genes in wheat (Triticum aestivum L.). Molecular Biology Reports. PMID 32361896 DOI: 10.1007/s11033-020-05477-5   
2020 Hämälä T, Tiffin P. Biased Gene Conversion Constrains Adaptation in . Genetics. PMID 32414868 DOI: 10.1534/genetics.120.303335   
2020 Wanford JJ, Holmes JC, Bayliss CD, Green LR. Meningococcal core and accessory phasomes vary by clonal complex. Microbial Genomics. PMID 32375989 DOI: 10.1099/mgen.0.000367   
2020 Wade T, Rangel LT, Kundu S, Fournier GP, Bansal MS. Assessing the accuracy of phylogenetic rooting methods on prokaryotic gene families. Plos One. 15: e0232950. PMID 32413061 DOI: 10.1371/journal.pone.0232950   
2020 Scalzitti N, Jeannin-Girardon A, Collet P, Poch O, Thompson JD. A benchmark study of ab initio gene prediction methods in diverse eukaryotic organisms. Bmc Genomics. 21: 293. PMID 32272892 DOI: 10.1186/s12864-020-6707-9   
2020 Dubin CA, Roop JI, Brem RB. Divergence of Peroxisome Membrane Gene Sequence and Expression Between Yeast Species. G3 (Bethesda, Md.). PMID 32317271 DOI: 10.1534/g3.120.401304   
2020 Yamasaki M, Makino T, Khor SS, Toyoda H, Miyagawa T, Liu X, Kuwabara H, Kano Y, Shimada T, Sugiyama T, Nishida H, Sugaya N, Tochigi M, Otowa T, Okazaki Y, et al. Sensitivity to gene dosage and gene expression affects genes with copy number variants observed among neuropsychiatric diseases. Bmc Medical Genomics. 13: 55. PMID 32223758 DOI: 10.1186/s12920-020-0699-9   
2020 Sun X, Yang B, Zhang Q. Analysis of inter-chromosomal distribution of disease-related genes in human genome. Current Protein & Peptide Science. PMID 32338215 DOI: 10.2174/1389203721666200426233158   
2020 Spruit CM, Wicklund A, Wan X, Skurnik M, Pajunen MI. Discovery of Three Toxic Proteins of Phage fHe-Kpn01. Viruses. 12. PMID 32429141 DOI: 10.3390/v12050544   
2020 Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM, Ganna A, Birnbaum DP, Gauthier LD, Brand H, Solomonson M, Watts NA, Rhodes D, ... , et al. The mutational constraint spectrum quantified from variation in 141,456 humans. Nature. 581: 434-443. PMID 32461654 DOI: 10.1038/s41586-020-2308-7   
2020 David KT, Oaks JR, Halanych KM. Patterns of gene evolution following duplications and speciations in vertebrates. Peerj. 8: e8813. PMID 32266119 DOI: 10.7717/peerj.8813   
2020 Wang Y, Nie Y, Yu D, Xie X, Qin L, Yang Y, Huang B. Genome-wide study of saprotrophy-related genes in the basal fungus Conidiobolus heterosporus. Applied Microbiology and Biotechnology. PMID 32445001 DOI: 10.1007/s00253-020-10698-6   
2020 Laurent JM, Garge RK, Teufel AI, Wilke CO, Kachroo AH, Marcotte EM. Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs. Plos Biology. 18: e3000627. PMID 32421706 DOI: 10.1371/journal.pbio.3000627   
2020 Llanes A, Rajeev S. First Whole Genome Sequence of , an Obligate Intracellular Rickettsial Pathogen of Dogs. Pathogens (Basel, Switzerland). 9. PMID 32290349 DOI: 10.3390/pathogens9040277   
2020 Chen K, Tian Z, Chen P, He H, Jiang F, Chao-An L. Genome-wide identification, characterization and expression analysis of lineage-specific genes within Hanseniaspora yeasts. Fems Microbiology Letters. PMID 32407480 DOI: 10.1093/femsle/fnaa077   
2020 Davidson PL, Guo H, Wang L, Berrio A, Zhang H, Chang Y, Soborowski AL, McClay DR, Fan G, Wray GA. Chromosomal-level genome assembly of the sea urchin Lytechinus variegatus substantially improves functional genomic analyses. Genome Biology and Evolution. PMID 32433766 DOI: 10.1093/gbe/evaa101   
2020 Lane N. How energy flow shapes cell evolution. Current Biology : Cb. 30: R471-R476. PMID 32428484 DOI: 10.1016/j.cub.2020.03.055   
2020 Fang L, Cai W, Liu S, Canela-Xandri O, Gao Y, Jiang J, Rawlik K, Li B, Schroeder SG, Rosen BD, Li CJ, Sonstegard TS, Alexander LJ, Van Tassell CP, VanRaden PM, et al. Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle. Genome Research. PMID 32424068 DOI: 10.1101/gr.250704.119   
2020 Song X, Nie F, Chen W, Ma X, Gong K, Yang Q, Wang J, Li N, Sun P, Pei Q, Yu T, Hu J, Li X, Wu T, Feng S, et al. Coriander Genomics Database: a genomic, transcriptomic, and metabolic database for coriander. Horticulture Research. 7: 55. PMID 32257241 DOI: 10.1038/s41438-020-0261-0   
2020 Choi IY, Kwon EC, Kim NS. The C- and G-value paradox with polyploidy, repeatomes, introns, phenomes and cell economy. Genes & Genomics. PMID 32445179 DOI: 10.1007/s13258-020-00941-9   
2020 Kim S, Cheong K, Park J, Kim MS, Kim J, Seo MK, Chae GY, Jang MJ, Mang H, Kwon SH, Kim YM, Koo N, Min CW, Kim KS, Oh N, et al. TGFam-Finder: a novel solution for target-gene family annotation in plants. The New Phytologist. PMID 32392385 DOI: 10.1111/nph.16645   
2020 McCoy MJ, Fire AZ. Intron and gene size expansion during nervous system evolution. Bmc Genomics. 21: 360. PMID 32410625 DOI: 10.1186/s12864-020-6760-4