Steven B. Cannon, Ph.D. - Publications

Affiliations: 
2004 University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Genetics, Molecular Biology, Botany Biology

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Valliyodan B, Cannon SB, Bayer PE, Shu S, Brown AV, Ren L, Jenkins J, Chung CY, Chan TF, Daum CG, Plott C, Hastie A, Baruch K, Barry KW, Huang W, et al. Construction and comparison of three reference-quality genome assemblies for soybean. The Plant Journal : For Cell and Molecular Biology. PMID 31433882 DOI: 10.1111/tpj.14500  0.32
2019 Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, ... ... Cannon SB, et al. The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics. PMID 31043755 DOI: 10.1038/s41588-019-0405-z  0.32
2016 Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, et al. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics. PMID 26901068 DOI: 10.1038/ng.3517  0.4
2016 Dash S, Cannon EKS, Kalberer SR, Farmer AD, Cannon SB. PeanutBase and Other Bioinformatic Resources for Peanut Peanuts: Genetics, Processing, and Utilization. 241-252. DOI: 10.1016/B978-1-63067-038-2.00008-3  0.4
2015 Dash S, Campbell JD, Cannon EK, Cleary AM, Huang W, Kalberer SR, Karingula V, Rice AG, Singh J, Umale PE, Weeks NT, Wilkey AP, Farmer AD, Cannon SB. Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. Nucleic Acids Research. PMID 26546515 DOI: 10.1093/nar/gkv1159  0.4
2015 Oellrich A, Walls RL, Cannon EK, Cannon SB, Cooper L, Gardiner J, Gkoutos GV, Harper L, He M, Hoehndorf R, Jaiswal P, Kalberer SR, Lloyd JP, Meinke D, Menda N, et al. An ontology approach to comparative phenomics in plants. Plant Methods. 11: 10. PMID 25774204 DOI: 10.1186/s13007-015-0053-y  0.4
2015 Cannon SB, McKain MR, Harkess A, Nelson MN, Dash S, Deyholos MK, Peng Y, Joyce B, Stewart CN, Rolf M, Kutchan T, Tan X, Chen C, Zhang Y, Carpenter E, et al. Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes. Molecular Biology and Evolution. 32: 193-210. PMID 25349287 DOI: 10.1093/molbev/msu296  0.4
2015 Belamkar V, Wenger A, Kalberer SR, Bhattacharya VG, Blackmon WJ, Cannon SB. Evaluation of phenotypic variation in a collection of Apios Americana: An edible tuberous legume Crop Science. 55: 712-726. DOI: 10.2135/cropsci2014.04.0281  0.4
2014 Belamkar V, Weeks NT, Bharti AK, Farmer AD, Graham MA, Cannon SB. Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress. Bmc Genomics. 15: 950. PMID 25362847 DOI: 10.1186/1471-2164-15-950  0.4
2014 Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, et al. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics. 46: 707-13. PMID 24908249 DOI: 10.1038/ng.3008  0.4
2014 Kudapa H, Azam S, Sharpe AG, Taran B, Li R, Deonovic B, Cameron C, Farmer AD, Cannon SB, Varshney RK. Comprehensive transcriptome assembly of Chickpea (Cicer arietinum L.) using sanger and next generation sequencing platforms: development and applications. Plos One. 9: e86039. PMID 24465857 DOI: 10.1371/journal.pone.0086039  0.4
2013 Cannon SB. The model legume genomes. Methods in Molecular Biology (Clifton, N.J.). 1069: 1-14. PMID 23996304 DOI: 10.1007/978-1-62703-613-9_1  0.4
2013 Singer SR, Schwarz JA, Manduca CA, Fox SP, Iverson ER, Taylor BJ, Cannon SB, May GD, Maki SL, Farmer AD, Doyle JJ. IBI series winner. Keeping an eye on biology. Science (New York, N.Y.). 339: 408-9. PMID 23349282 DOI: 10.1126/science.1229848  0.4
2012 Tian Z, Zhao M, She M, Du J, Cannon SB, Liu X, Xu X, Qi X, Li MW, Lam HM, Ma J. Genome-wide characterization of nonreference transposons reveals evolutionary propensities of transposons in soybean. The Plant Cell. 24: 4422-36. PMID 23175746 DOI: 10.1105/tpc.112.103630  0.4
2012 Kudapa H, Bharti AK, Cannon SB, Farmer AD, Mulaosmanovic B, Kramer R, Bohra A, Weeks NT, Crow JA, Tuteja R, Shah T, Dutta S, Gupta DK, Singh A, Gaikwad K, et al. A comprehensive transcriptome assembly of Pigeonpea (Cajanus cajan L.) using sanger and second-generation sequencing platforms. Molecular Plant. 5: 1020-8. PMID 22241453 DOI: 10.1093/mp/ssr111  0.4
2012 Du J, Tian Z, Sui Y, Zhao M, Song Q, Cannon SB, Cregan P, Ma J. Pericentromeric effects shape the patterns of divergence, retention, and expression of duplicated genes in the paleopolyploid soybean. The Plant Cell. 24: 21-32. PMID 22227891 DOI: 10.1105/tpc.111.092759  0.4
2012 Cannon SB, Crow JA, Grant D. SoyBase and the Legume Information System: Accessing Information about the Soybean and Other Legume Genomes Designing Soybeans For 21st Century Markets. 53-66. DOI: 10.1016/B978-0-9830791-0-1.50008-X  0.4
2011 Cannon EK, Cannon SB. Chromosome visualization tool: a whole genome viewer. International Journal of Plant Genomics. 2011: 373875. PMID 22220167 DOI: 10.1155/2011/373875  0.4
2011 Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature. 480: 520-4. PMID 22089132 DOI: 10.1038/nature10625  0.4
2011 Severin AJ, Cannon SB, Graham MM, Grant D, Shoemaker RC. Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy. The Plant Cell. 23: 3129-36. PMID 21917551 DOI: 10.1105/tpc.111.089573  0.4
2011 Hiremath PJ, Farmer A, Cannon SB, Woodward J, Kudapa H, Tuteja R, Kumar A, Bhanuprakash A, Mulaosmanovic B, Gujaria N, Krishnamurthy L, Gaur PM, Kavikishor PB, Shah T, Srinivasan R, et al. Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal. 9: 922-31. PMID 21615673 DOI: 10.1111/j.1467-7652.2011.00625.x  0.4
2011 Dubey A, Farmer A, Schlueter J, Cannon SB, Abernathy B, Tuteja R, Woodward J, Shah T, Mulasmanovic B, Kudapa H, Raju NL, Gothalwal R, Pande S, Xiao Y, Town CD, et al. Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 18: 153-64. PMID 21565938 DOI: 10.1093/dnares/dsr007  0.4
2011 Woody JL, Severin AJ, Bolon YT, Joseph B, Diers BW, Farmer AD, Weeks N, Muehlbauer GJ, Nelson RT, Grant D, Specht JE, Graham MA, Cannon SB, May GD, Vance CP, et al. Gene expression patterns are correlated with genomic and genic structure in soybean. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 54: 10-8. PMID 21217801 DOI: 10.1139/G10-090  0.4
2011 Cannon SB, Shoemaker RC. Evolutionary and comparative analyses of the soybean genome Breeding Science. 61: 437-444. DOI: 10.1270/jsbbs.61.437  0.4
2011 Cannon SB, Sato S, Tabata S, Young ND, May GD. Legumes as a model plant family Biology and Breeding of Food Legumes. 348-361.  0.4
2010 Peto M, Grant DM, Shoemaker RC, Cannon SB. Applying small-scale DNA signatures as an aid in assembling soybean chromosome sequences. Advances in Bioinformatics. PMID 20827309 DOI: 10.1155/2010/976792  0.4
2010 Severin AJ, Woody JL, Bolon YT, Joseph B, Diers BW, Farmer AD, Muehlbauer GJ, Nelson RT, Grant D, Specht JE, Graham MA, Cannon SB, May GD, Vance CP, Shoemaker RC. RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome. Bmc Plant Biology. 10: 160. PMID 20687943 DOI: 10.1186/1471-2229-10-160  0.4
2010 Cannon SB, Ilut D, Farmer AD, Maki SL, May GD, Singer SR, Doyle JJ. Polyploidy did not predate the evolution of nodulation in all legumes. Plos One. 5: e11630. PMID 20661290 DOI: 10.1371/journal.pone.0011630  0.4
2010 Du J, Tian Z, Hans CS, Laten HM, Cannon SB, Jackson SA, Shoemaker RC, Ma J. Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison. The Plant Journal : For Cell and Molecular Biology. 63: 584-98. PMID 20525006 DOI: 10.1111/j.1365-313X.2010.04263.x  0.4
2010 Bolon YT, Joseph B, Cannon SB, Graham MA, Diers BW, Farmer AD, May GD, Muehlbauer GJ, Specht JE, Tu ZJ, Weeks N, Xu WW, Shoemaker RC, Vance CP. Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean. Bmc Plant Biology. 10: 41. PMID 20199683 DOI: 10.1186/1471-2229-10-41  0.4
2010 Hyten DL, Cannon SB, Song Q, Weeks N, Fickus EW, Shoemaker RC, Specht JE, Farmer AD, May GD, Cregan PB. High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. Bmc Genomics. 11: 38. PMID 20078886 DOI: 10.1186/1471-2164-11-38  0.4
2010 Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, et al. Genome sequence of the palaeopolyploid soybean. Nature. 463: 178-83. PMID 20075913 DOI: 10.1038/nature08670  0.4
2010 Grant D, Nelson RT, Cannon SB, Shoemaker RC. SoyBase, the USDA-ARS soybean genetics and genomics database. Nucleic Acids Research. 38: D843-6. PMID 20008513 DOI: 10.1093/nar/gkp798  0.4
2009 David P, Chen NW, Pedrosa-Harand A, Thareau V, Sévignac M, Cannon SB, Debouck D, Langin T, Geffroy V. A nomadic subtelomeric disease resistance gene cluster in common bean. Plant Physiology. 151: 1048-65. PMID 19776165 DOI: 10.1104/pp.109.142109  0.4
2009 Cannon SB, May GD, Jackson SA. Three sequenced legume genomes and many crop species: rich opportunities for translational genomics. Plant Physiology. 151: 970-7. PMID 19759344 DOI: 10.1104/pp.109.144659  0.4
2009 Singer SR, Maki SL, Farmer AD, Ilut D, May GD, Cannon SB, Doyle JJ. Venturing beyond beans and peas: what can we learn from Chamaecrista? Plant Physiology. 151: 1041-7. PMID 19755538 DOI: 10.1104/pp.109.144774  0.4
2009 Zhang XC, Cannon SB, Stacey G. Evolutionary genomics of LysM genes in land plants. Bmc Evolutionary Biology. 9: 183. PMID 19650916 DOI: 10.1186/1471-2148-9-183  0.4
2009 Bertioli DJ, Moretzsohn MC, Madsen LH, Sandal N, Leal-Bertioli SC, Guimarães PM, Hougaard BK, Fredslund J, Schauser L, Nielsen AM, Sato S, Tabata S, Cannon SB, Stougaard J. An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes. Bmc Genomics. 10: 45. PMID 19166586 DOI: 10.1186/1471-2164-10-45  0.4
2008 Wawrzynski A, Ashfield T, Chen NW, Mammadov J, Nguyen A, Podicheti R, Cannon SB, Thareau V, Ameline-Torregrosa C, Cannon E, Chacko B, Couloux A, Dalwani A, Denny R, Deshpande S, et al. Replication of nonautonomous retroelements in soybean appears to be both recent and common. Plant Physiology. 148: 1760-71. PMID 18952860 DOI: 10.1104/pp.108.127910  0.4
2008 Innes RW, Ameline-Torregrosa C, Ashfield T, Cannon E, Cannon SB, Chacko B, Chen NW, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Hans CS, Howell S, et al. Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiology. 148: 1740-59. PMID 18842825 DOI: 10.1104/pp.108.127902  0.4
2008 Ameline-Torregrosa C, Cazaux M, Danesh D, Chardon F, Cannon SB, Esquerré-Tugayé MT, Dumas B, Young ND, Samac DA, Huguet T, Jacquet C. Genetic dissection of resistance to anthracnose and powdery mildew in Medicago truncatula. Molecular Plant-Microbe Interactions : Mpmi. 21: 61-9. PMID 18052883 DOI: 10.1094/MPMI-21-1-0061  0.4
2008 Ameline-Torregrosa C, Wang BB, O'Bleness MS, Deshpande S, Zhu H, Roe B, Young ND, Cannon SB. Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula Plant Physiology. 146: 5-21. PMID 17981990 DOI: 10.1104/pp.107.104588  0.4
2007 Febrer M, Cheung F, Town CD, Cannon SB, Young ND, Abberton MT, Jenkins G, Milbourne D. Construction, characterization, and preliminary BAC-end sequencing analysis of a bacterial artificial chromosome library of white clover (Trifolium repens L.). Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 50: 412-21. PMID 17546099 DOI: 10.1139/g07-013  0.4
2007 Zhang XC, Wu X, Findley S, Wan J, Libault M, Nguyen HT, Cannon SB, Stacey G. Molecular evolution of lysin motif-type receptor-like kinases in plants. Plant Physiology. 144: 623-36. PMID 17449649 DOI: 10.1104/pp.107.097097  0.4
2006 Cannon SB, Sterck L, Rombauts S, Sato S, Cheung F, Gouzy J, Wang X, Mudge J, Vasdewani J, Schiex T, Scheix T, Spannagl M, Monaghan E, Nicholson C, Humphray SJ, et al. Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proceedings of the National Academy of Sciences of the United States of America. 103: 14959-64. PMID 17003129 DOI: 10.1073/pnas.0603228103  0.4
2006 Johnson JR, Owens KL, Clabots CR, Weissman SJ, Cannon SB. Phylogenetic relationships among clonal groups of extraintestinal pathogenic Escherichia coli as assessed by multi-locus sequence analysis. Microbes and Infection / Institut Pasteur. 8: 1702-13. PMID 16820314 DOI: 10.1016/j.micinf.2006.02.007  0.4
2005 Mudge J, Cannon SB, Kalo P, Oldroyd GE, Roe BA, Town CD, Young ND. Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana. Bmc Plant Biology. 5: 15. PMID 16102170 DOI: 10.1186/1471-2229-5-15  0.4
2005 Cannon SB, Crow JA, Heuer ML, Wang X, Cannon EK, Dwan C, Lamblin AF, Vasdewani J, Mudge J, Cook A, Gish J, Cheung F, Kenton S, Kunau TM, Brown D, et al. Databases and information integration for the Medicago truncatula genome and transcriptome. Plant Physiology. 138: 38-46. PMID 15888676 DOI: 10.1104/pp.104.059204  0.4
2005 Young ND, Cannon SB, Sato S, Kim D, Cook DR, Town CD, Roe BA, Tabata S. Sequencing the genespaces of Medicago truncatula and Lotus japonicus. Plant Physiology. 137: 1174-81. PMID 15824279 DOI: 10.1104/pp.104.057034  0.4
2005 Graham MA, Silverstein KAT, Cannon SB, Vandenbosch KA. Computational identification of legume-specific genes Genome Exploitation: Data Mining the Genome. 211-225. DOI: 10.1007/0-387-24187-6_15  0.4
2004 Anderson JP, Mueller JL, Rosengren S, Boyle DL, Schaner P, Cannon SB, Goodyear CS, Hoffman HM. Structural, expression, and evolutionary analysis of mouse CIAS1. Gene. 338: 25-34. PMID 15302403 DOI: 10.1016/j.gene.2004.05.002  0.4
2004 Graham MA, Silverstein KA, Cannon SB, VandenBosch KA. Computational identification and characterization of novel genes from legumes. Plant Physiology. 135: 1179-97. PMID 15266052 DOI: 10.1104/pp.104.037531  0.4
2004 Cannon SB, Mitra A, Baumgarten A, Young ND, May G. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. Bmc Plant Biology. 4: 10. PMID 15171794 DOI: 10.1186/1471-2229-4-10  0.4
2003 Cannon SB, McCombie WR, Sato S, Tabata S, Denny R, Palmer L, Katari M, Young ND, Stacey G. Evolution and microsynteny of the apyrase gene family in three legume genomes Molecular Genetics and Genomics. 270: 347-361. PMID 14598165 DOI: 10.1007/s00438-003-0928-x  0.4
2003 Cannon SB, Kozik A, Chan B, Michelmore R, Young ND. DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization. Genome Biology. 4: R68. PMID 14519203 DOI: 10.1186/gb-2003-4-10-r68  0.4
2003 Cannon SB, Young ND. OrthoParaMap: distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogenies. Bmc Bioinformatics. 4: 35. PMID 12952558 DOI: 10.1186/1471-2105-4-35  0.4
2003 Bertioli DJ, Leal-Bertioli SCM, Lion MB, Santos VL, Pappas G, Cannon SB, Guimarães PM. A large scale analysis of resistance gene homologues in Arachis Molecular Genetics and Genomics. 270: 34-45. PMID 12928866 DOI: 10.1007/s00438-003-0893-4  0.4
2002 Zhu H, Cannon SB, Young ND, Cook DR. Phylogeny and genomic organization of the TIR and non-tIR NBS-LRR resistance gene family in Medicago truncatula. Molecular Plant-Microbe Interactions : Mpmi. 15: 529-39. PMID 12059101 DOI: 10.1094/MPMI.2002.15.6.529  0.4
2002 Cannon SB, Zhu H, Baumgarten AM, Spangler R, May G, Cook DR, Young ND. Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies. Journal of Molecular Evolution. 54: 548-62. PMID 11956693 DOI: 10.1007/s00239-001-0057-2  0.4
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