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Dianne H. Cook - Publications

Affiliations: 
Genetics, Development and Cell Biology Iowa State University, Ames, IA, United States 
Area:
Bioinformatics Biology
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69 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Rutter L, Cook D. bigPint: A Bioconductor visualization package that makes big data pint-sized. Plos Computational Biology. 16: e1007912. PMID 32542031 DOI: 10.1371/Journal.Pcbi.1007912  0.371
2020 Laa U, Cook D, Valencia G. A Slice Tour for Finding Hollowness in High-Dimensional Data Journal of Computational and Graphical Statistics. 1-7. DOI: 10.1080/10618600.2020.1777140  0.387
2020 Wang E, Cook D, Hyndman RJ. Calendar-based graphics for visualizing people’s daily schedules Journal of Computational and Graphical Statistics. 1-13. DOI: 10.1080/10618600.2020.1715226  0.34
2020 Wang E, Cook D, Hyndman RJ. A New Tidy Data Structure to Support Exploration and Modeling of Temporal Data Journal of Computational and Graphical Statistics. 1-13. DOI: 10.1080/10618600.2019.1695624  0.366
2020 Laa U, Cook D. Using tours to visually investigate properties of new projection pursuit indexes with application to problems in physics Computational Statistics. 35: 1171-1205. DOI: 10.1007/S00180-020-00954-8  0.384
2019 Rutter L, Moran Lauter AN, Graham MA, Cook D. Visualization methods for differential expression analysis. Bmc Bioinformatics. 20: 458. PMID 31492109 DOI: 10.1186/S12859-019-2968-1  0.394
2019 Lee S, Cook D, Lawrence M. plyranges: a grammar of genomic data transformation. Genome Biology. 20: 4. PMID 30609939 DOI: 10.1186/S13059-018-1597-8  0.332
2019 Kipp M, Laa U, Cook D. Connecting R with D3 for dynamic graphics, to explore multivariate data with tours R Journal. 11: 245-249. DOI: 10.32614/Rj-2019-002  0.322
2019 Rutter L, VanderPlas S, Cook D, Graham MA. ggenealogy: An R Package for Visualizing Genealogical Data Journal of Statistical Software. 89: 1-31. DOI: 10.18637/Jss.V089.I13  0.38
2019 Hofmann H, Wickham H, Cook D. The 2013 Data Expo of the American Statistical Association Computational Statistics. 34: 1443-1447. DOI: 10.1007/S00180-019-00923-W  0.687
2018 Cook D, Laa U, Valencia G. Dynamical projections for the visualization of PDFSense data European Physical Journal C. 78: 742. DOI: 10.1140/Epjc/S10052-018-6205-2  0.407
2018 Chowdhury NR, Cook D, Hofmann H, Majumder M. Measuring Lineup Difficulty By Matching Distance Metrics With Subject Choices in Crowd-Sourced Data Journal of Computational and Graphical Statistics. 27: 132-145. DOI: 10.1080/10618600.2017.1356323  0.643
2017 Loy A, Hofmann H, Cook D. Model Choice and Diagnostics for Linear Mixed-Effects Models Using Statistics on Street Corners Journal of Computational and Graphical Statistics. 26: 478-492. DOI: 10.1080/10618600.2017.1330207  0.346
2016 Schloerke B, Wickham H, Cook D, Hofmann H. Escape from Boxland R Journal. 8: 243-257. DOI: 10.32614/Rj-2016-044  0.631
2016 Cheng X, Cook D, Hofmann H. Enabling Interactivity on Displays of Multivariate Time Series and Longitudinal Data Journal of Computational and Graphical Statistics. 25: 1057-1076. DOI: 10.1080/10618600.2015.1105749  0.401
2015 Cheng X, Cook D, Hofmann H. Visually exploring missing values in multivariable data using a graphical user interface Journal of Statistical Software. 68. DOI: 10.18637/Jss.V068.I06  0.397
2015 Wickham H, Cook D, Hofmann H. Authors' response to discussants Statistical Analysis and Data Mining. 8: 242-244. DOI: 10.1002/Sam.11276  0.644
2015 Wickham H, Cook D, Hofmann H. Visualizing statistical models: Removing the blindfold Statistical Analysis and Data Mining. 8: 203-225. DOI: 10.1002/Sam.11271  0.711
2014 Roy Chowdhury N, Cook D, Hofmann H, Majumder M, Lee EK, Toth AL. Using visual statistical inference to better understand random class separations in high dimension, low sample size data Computational Statistics. 30: 293-316. DOI: 10.1007/S00180-014-0534-X  0.599
2014 Cook D. The 2011 data Expo of the American Statistical Association Computational Statistics. 29: 117-119. DOI: 10.1007/S00180-013-0474-X  0.329
2013 Debinski DM, Caruthers JC, Cook D, Crowley J, Wickham H. Gradient-based habitat affinities predict species vulnerability to drought. Ecology. 94: 1036-45. PMID 23858644 DOI: 10.1890/12-0359.1  0.647
2013 Zhao Y, Cook D, Hofmann H, Majumder M, Chowdhury NR. Mind Reading: Using an Eye-Tracker to See How People are Looking at Lineups International Journal of Intelligent Technologies and Applied Statistics. 6: 393-413. DOI: 10.6148/Ijitas.2013.0604.05  0.561
2013 Yin T, Majumder M, Chowdhury NR, Cook D, Shoemaker y, Graham M. Visual Mining Methods for RNA-Seq Data: Data Structure, Dispersion Estimation and Significance Testing Journal of Data Mining in Genomics & Proteomics. 4: 1-9. DOI: 10.4172/2153-0602.1000139  0.624
2013 Unwin A, Hofmann H, Cook D. Let Graphics Tell the Story - Datasets in R R Journal. 5: 117-129. DOI: 10.32614/Rj-2013-012  0.308
2013 Debinski DM, Caruthers J, Cook D, Crowley J, Wickham H. COENONYMPHA HAYDENII RESPONDS TO DROUGHT Bulletin of the Ecological Society of America. 94: 182-182. DOI: 10.1890/0012-9623-94.2.182  0.637
2013 Lee YD, Cook DH, Park J, Lee E. PPtree: Projection pursuit classification tree Electronic Journal of Statistics. 7: 1369-1386. DOI: 10.1214/13-Ejs810  0.502
2013 Newell MA, Cook D, Hofmann H, Jannink JL. An algorithm for deciding the number of clusters and validation using simulated data with application to exploring crop population structure Annals of Applied Statistics. 7: 1898-1916. DOI: 10.1214/13-Aoas671  0.319
2013 Emerson JW, Green WA, Schloerke B, Crowley J, Cook D, Hofmann H, Wickham H. The generalized pairs plot Journal of Computational and Graphical Statistics. 22: 79-91. DOI: 10.1080/10618600.2012.694762  0.668
2013 Majumder M, Hofmann H, Cook D. Validation of visual statistical inference, applied to linear models Journal of the American Statistical Association. 108: 942-956. DOI: 10.1080/01621459.2013.808157  0.399
2012 Hofmann H, Follett L, Majumder M, Cook D. Graphical Tests for Power Comparison of Competing Designs. Ieee Transactions On Visualization and Computer Graphics. 18: 2441-8. PMID 26357152 DOI: 10.1109/Tvcg.2012.230  0.319
2012 Yin T, Cook D, Lawrence M. ggbio: an R package for extending the grammar of graphics for genomic data. Genome Biology. 13: R77. PMID 22937822 DOI: 10.1186/Gb-2012-13-8-R77  0.306
2012 Huang B, Cook D, Wickham H. tourrGui: A gWidgets GUI for the tour to explore high-dimensional data using low-dimensional projections Journal of Statistical Software. 49: 1-12. DOI: 10.18637/Jss.V049.I06  0.711
2012 Wickham H, Hofmann H, Wickham C, Cook D. Glyph‐maps for visually exploring temporal patterns in climate data and models Environmetrics. 23: 382-393. DOI: 10.1002/Env.2152  0.701
2011 Sun X, Wu K, Cook D. PKgraph: an R package for graphically diagnosing population pharmacokinetic models. Computer Methods and Programs in Biomedicine. 104: 461-71. PMID 21555161 DOI: 10.1016/J.Cmpb.2011.03.016  0.347
2011 Lee E, Cook D, Hoffman H. Finding Interesting Genes Using Reliability in Various Gene Expression Models Genomics & Informatics. 9: 28-36. DOI: 10.5808/Gi.2011.9.1.028  0.471
2011 Wickham H, Cook D, Hofmann H, Buja A. Tourr: An R package for exploring multivariate data with projections Journal of Statistical Software. 40: 1-18. DOI: 10.18637/Jss.V040.I02  0.774
2010 Wickham H, Cook D, Hofmann H, Buja A. Graphical inference for Infovis. Ieee Transactions On Visualization and Computer Graphics. 16: 973-9. PMID 20975134 DOI: 10.1109/Tvcg.2010.161  0.766
2010 Levine RA, Tierney L, Wickham H, Sampson E, Cook D, van Dyk DA. Editorial: Publishing Animations, 3D Visualizations, and Movies inJCGS Journal of Computational and Graphical Statistics. 19: 1-2. DOI: 10.1198/Jcgs.2010.191Ed  0.677
2010 Mosley L, Cook D, Hofmann H, Kielion C, Schloerke B. Visually Monitoring the 2008 Election Chance. 23: 4-4. DOI: 10.1080/09332480.2010.10739812  0.315
2010 Lee E, Cook D. A projection pursuit index for large p small n data Statistics and Computing. 20: 381-392. DOI: 10.1007/S11222-009-9131-1  0.509
2010 Hobbs J, Wickham H, Hofmann H, Cook D. Glaciers melt as mountains warm: a graphical case study Computational Statistics. 25: 569-586. DOI: 10.1007/S00180-010-0202-8  0.374
2009 Buja A, Cook D, Hofmann H, Lawrence M, Lee EK, Swayne DF, Wickham H. Statistical inference for exploratory data analysis and model diagnostics. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 367: 4361-83. PMID 19805449 DOI: 10.1098/Rsta.2009.0120  0.761
2009 Wickham H, Lawrence M, Cook D, Buja A, Hofmann H, Swayne DF. The plumbing of interactive graphics Computational Statistics. 24: 207-215. DOI: 10.1007/S00180-008-0116-X  0.636
2009 Lawrence M, Wickham H, Cook D, Hofmann H, Swayne DF. Extending the GGobi pipeline from R: Rapid prototyping of interactive visualizations Computational Statistics. 24: 195-205. DOI: 10.1007/S00180-008-0115-Y  0.394
2008 Lawrence M, Cook D, Lee E, Babka H, Wurtele ES. explorase: Multivariate Exploratory Analysis and Visualization for Systems Biology Journal of Statistical Software. 25. DOI: 10.18637/Jss.V025.I09  0.42
2005 Shen L, Gong J, Caldo RA, Nettleton D, Cook D, Wise RP, Dickerson JA. BarleyBase--an expression profiling database for plant genomics. Nucleic Acids Research. 33: D614-8. PMID 15608273 DOI: 10.1093/Nar/Gki123  0.368
2005 Lee EK, Cook D, Klinke S, Lumley T. Projection pursuit for exploratory supervised classification Journal of Computational and Graphical Statistics. 14: 831-846. DOI: 10.1198/106186005X77702  0.391
2005 Buja A, Cook D, Asimov D, Hurley C. Computational Methods for High-Dimensional Rotations in Data Visualization Handbook of Statistics. 24: 391-413. DOI: 10.1016/S0169-7161(04)24014-7  0.68
2003 Wurtele ES, Li J, Diao L, Zhang H, Foster CM, Fatland B, Dickerson J, Brown A, Cox Z, Cook D, Lee EK, Hofmann H. MetNet: Software to Build and Model the Biogenetic Lattice of Arabidopsis. Comparative and Functional Genomics. 4: 239-45. PMID 18629120 DOI: 10.1002/Cfg.285  0.546
2003 Swayne DF, Lang DT, Buja A, Cook D. GGobi: evolving from XGobi into an extensible framework for interactive data visualization Computational Statistics & Data Analysis. 43: 423-444. DOI: 10.1016/S0167-9473(02)00286-4  0.679
2003 Ahn JS, Hofmann H, Cook D. A Projection Pursuit Method on the multidimensional squared Contingency Table Computational Statistics. 18: 605-626. DOI: 10.1007/Bf03354619  0.388
2001 Cox Z, Dickerson JA, Cook DH. Visualizing membership in multiple clusters after fuzzy c-means clustering Proceedings of Spie. 4302: 60-68. DOI: 10.1117/12.424916  0.338
2000 Meyer RD, Cook D. Visualization of data. Current Opinion in Biotechnology. 11: 89-96. PMID 10679340 DOI: 10.1016/S0958-1669(99)00060-9  0.421
2000 Kwon S, Cook DH. Visualization and case reduction in multivariate data clustering Electronic Imaging. 3960: 211-217. DOI: 10.1117/12.378897  0.344
2000 Sutherland P, Rossini A, Lumley T, Lewin-Koh N, Dickerson J, Cox Z, Cook D. Orca: A Visualization Toolkit for High-Dimensional Data Journal of Computational and Graphical Statistics. 9: 509-529. DOI: 10.1080/10618600.2000.10474896  0.44
2000 Symanzik J, Cook D, Lewin-Koh N, Megretskaia I. Linking ArcView™ and XGobi: Insight behind the Front End Journal of Computational and Graphical Statistics. 9: 470-490. DOI: 10.1080/10618600.2000.10474894  0.332
2000 Macêdo M, Cook D, Brown TJ. Visual Data Mining In Atmospheric Science Data Data Mining and Knowledge Discovery. 4: 69-80. DOI: 10.1023/A:1009880716855  0.443
2000 Qi R, Cook D, Kliemann W, Vittal V. Visualization of stable manifolds and multidimensional surfaces in the analysis of power system dynamics Journal of Nonlinear Science. 10: 175-195. DOI: 10.1007/S003329910008  0.322
2000 Kim SS, Kwon S, Cook D. Interactive visualization of hierarchical clusters using MDS and MST Metrika. 51: 39-51. DOI: 10.1007/S001840000043  0.302
1999 Nelson L, Cook D, Cruz-Neira C. XGobi vs the C2: Results of an experiment comparing data visualization in a 3-D immersive virtual reality environment with a 2-D workstation display Computational Statistics. 14: 39-51. DOI: 10.1007/Pl00022704  0.366
1998 Swayne DF, Cook D, Buja A. XGobi: Interactive Dynamic Data Visualization in the X Window System Journal of Computational and Graphical Statistics. 7: 113-130. DOI: 10.1080/10618600.1998.10474764  0.705
1998 Cook D, Cruz-Neira C, Kohlmeyer BD, Lechner U, Lewin N, Nelson L, Olsen A, Pierson S, Symanzik J. Exploring environmental data in a highly immersive virtual reality environment Environmental Monitoring and Assessment. 51: 441-450. DOI: 10.1023/A:1005909420690  0.354
1997 Cook D. Calibrate Your Eyes to Recognize High-Dimensional Shapes from Their Low-Dimensional Projections Journal of Statistical Software. 2: 1-7. DOI: 10.18637/Jss.V002.I06  0.369
1997 Cook D, Buja A. Manual Controls for High-Dimensional Data Projections Journal of Computational and Graphical Statistics. 6: 464-480. DOI: 10.1080/10618600.1997.10474754  0.67
1997 Klinke S, Cook D. Binning of kernel-based projection pursuit indices in XGobi Computational Statistics & Data Analysis. 25: 363-369. DOI: 10.1016/S0167-9473(97)82604-7  0.36
1997 Cook D, Symanzik J, Majure JJ, Cressie N. Dynamic graphics in a GIS: More examples using linked software Computers and Geosciences. 23: 371-385. DOI: 10.1016/S0098-3004(97)00015-0  0.333
1996 Buja A, Cook D. Interactive High-Dimensional Data Visualization Journal of Computational and Graphical Statistics. 5: 78-99. DOI: 10.1080/10618600.1996.10474696  0.699
1995 Cook D, Buja A, Cabrera J, Hurley C. Grand Tour and Projection Pursuit Journal of Computational and Graphical Statistics. 4: 155-172. DOI: 10.1080/10618600.1995.10474674  0.726
1993 Cook D, Buja A, Cabrera J. Pojection pursuit indexes based on orthonormal function expansions Journal of Computational and Graphical Statistics. 2: 225-250. DOI: 10.1080/10618600.1993.10474610  0.704
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