Ignazio Carbone, Ph.D. - Publications

Affiliations: 
2000 University of Toronto, Toronto, ON, Canada 
Area:
Botany Biology

58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Horn BW, Gell RM, Singh R, Sorensen RB, Carbone I. Sexual reproduction in aspergillus flavus sclerotia: Acquisition of novel alleles from soil populations and uniparental mitochondrial inheritance Plos One. 11. DOI: 10.1371/journal.pone.0146169  0.92
2016 Call A, Sun YX, Yu Y, Pearman PB, Thomas DT, Trigiano RN, Carbone I, Xiang QY. Genetic structure and post-glacial expansion of Cornus Florida L. (Cornaceae): Integrative evidence from phylogeography, population demographic history, and species distribution modeling Journal of Systematics and Evolution. 54: 136-151. DOI: 10.1111/jse.12171  0.92
2015 Runa F, Carbone I, Bhatnagar D, Payne GA. Nuclear heterogeneity in conidial populations of Aspergillus flavus. Fungal Genetics and Biology : Fg & B. 84: 62-72. PMID 26362651 DOI: 10.1016/J.Fgb.2015.09.003  0.92
2015 Putman AI, Tredway LP, Carbone I. Characterization and distribution of mating-type genes of the turfgrass pathogen Sclerotinia homoeocarpa on a global scale. Fungal Genetics and Biology : Fg & B. 81: 25-40. PMID 26049125 DOI: 10.1016/J.Fgb.2015.05.012  0.92
2015 Olarte RA, Worthington CJ, Horn BW, Moore GG, Singh R, Monacell JT, Dorner JW, Stone EA, Xie DY, Carbone I. Enhanced diversity and aflatoxigenicity in interspecific hybrids of Aspergillus flavus and Aspergillus parasiticus. Molecular Ecology. 24: 1889-909. PMID 25773520 DOI: 10.1111/Mec.13153  0.92
2015 Lassiter ES, Russ C, Nusbaum C, Zeng Q, Saville AC, Olarte RA, Carbone I, Hu CH, Seguin-Orlando A, Samaniego JA, Thorne JL, Ristaino JB. Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species. Current Genetics. PMID 25754775 DOI: 10.1007/S00294-015-0480-3  0.92
2015 Olarte RA, Horn BW, Singh R, Carbone I. Sexual recombination in Aspergillus tubingensis. Mycologia. 107: 307-12. PMID 25572097 DOI: 10.3852/14-233  0.92
2014 Putman AI, Carbone I. Challenges in analysis and interpretation of microsatellite data for population genetic studies. Ecology and Evolution. 4: 4399-428. PMID 25540699 DOI: 10.1002/Ece3.1305  0.92
2014 Barnes I, Wingfield MJ, Carbone I, Kirisits T, Wingfield BD. Population structure and diversity of an invasive pine needle pathogen reflects anthropogenic activity. Ecology and Evolution. 4: 3642-61. PMID 25478155 DOI: 10.1002/Ece3.1200  0.92
2014 Oono R, Lutzoni F, Arnold AE, Kaye L, U'Ren JM, May G, Carbone I. Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species. American Journal of Botany. 101: 1362-74. PMID 25156984 DOI: 10.3732/Ajb.1400141  0.92
2014 U'Ren JM, Riddle JM, Monacell JT, Carbone I, Miadlikowska J, Arnold AE. Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi. Molecular Ecology Resources. 14: 1032-48. PMID 24628864 DOI: 10.1111/1755-0998.12252  0.92
2014 Monacell JT, Carbone I. Mobyle SNAP Workbench: a web-based analysis portal for population genetics and evolutionary genomics. Bioinformatics (Oxford, England). 30: 1488-90. PMID 24489366 DOI: 10.1093/Bioinformatics/Btu055  0.92
2014 Horn BW, Sorensen RB, Lamb MC, Sobolev VS, Olarte RA, Worthington CJ, Carbone I. Sexual reproduction in Aspergillus flavus sclerotia naturally produced in corn. Phytopathology. 104: 75-85. PMID 23883157 DOI: 10.1094/Phyto-05-13-0129-R  0.92
2014 Miller JD, Schaafsma AW, Bhatnagar D, Bondy G, Carbone I, Harris LJ, Harrison G, Munkvold GP, Oswald IP, Pestka JJ, Sharpe L, Sumarah MW, Tittlemier SA, Zhou T. Mycotoxins that affect the North American agri-food sector: State of the art and directions for the future World Mycotoxin Journal. 7: 63-82. DOI: 10.3920/Wmj2013.1624  0.92
2013 Moore GG, Elliott JL, Singh R, Horn BW, Dorner JW, Stone EA, Chulze SN, Barros GG, Naik MK, Wright GC, Hell K, Carbone I. Sexuality generates diversity in the aflatoxin gene cluster: evidence on a global scale. Plos Pathogens. 9: e1003574. PMID 24009506 DOI: 10.1371/Journal.Ppat.1003574  0.92
2013 Agostini C, Albaladejo RG, Aparicio A, Arthofer W, Berrebi P, Boag PT, Carbone I, Conroy GC, Cortesero AM, Costa Gonçalves E, Costa D, Couto A, De Girolamo M, Du H, et al. Permanent genetic resources added to molecular ecology resources database 1 April 2013-31 May 2013. Molecular Ecology Resources. 13: 966-8. PMID 23937578 DOI: 10.1111/1755-0998.12140  0.92
2013 Horn BW, Olarte RA, Peterson SW, Carbone I. Sexual reproduction in Aspergillus tubingensis from section Nigri. Mycologia. 105: 1153-63. PMID 23709489 DOI: 10.3852/13-101  0.92
2013 Bradshaw RE, Slot JC, Moore GG, Chettri P, de Wit PJ, Ehrlich KC, Ganley AR, Olson MA, Rokas A, Carbone I, Cox MP. Fragmentation of an aflatoxin-like gene cluster in a forest pathogen. The New Phytologist. 198: 525-35. PMID 23448391 DOI: 10.1111/Nph.12161  0.92
2013 Wei W, Ayub Q, Chen Y, McCarthy S, Hou Y, Carbone I, Xue Y, Tyler-Smith C. A calibrated human Y-chromosomal phylogeny based on resequencing. Genome Research. 23: 388-95. PMID 23038768 DOI: 10.1101/Gr.143198.112  0.92
2012 Olarte RA, Horn BW, Dorner JW, Monacell JT, Singh R, Stone EA, Carbone I. Effect of sexual recombination on population diversity in aflatoxin production by Aspergillus flavus and evidence for cryptic heterokaryosis. Molecular Ecology. 21: 1453-76. PMID 22212063 DOI: 10.1111/J.1365-294X.2011.05398.X  0.92
2011 Olson HA, Carbone I, Benson DM. Phylogenetic history of Phytophthora cryptogea and P. drechsleri isolates from floriculture crops in North Carolina greenhouses Phytopathology. 101: 1373-1384. PMID 21999161 DOI: 10.1094/Phyto-11-10-0302  0.92
2011 Litvintseva AP, Carbone I, Rossouw J, Thakur R, Govender NP, Mitchell TG. Evidence that the human pathogenic fungus Cryptococcus neoformans var. grubii may have evolved in Africa. Plos One. 6: e19688. PMID 21589919 DOI: 10.1371/Journal.Pone.0019688  0.92
2011 Horn BW, Moore GG, Carbone I. Sexual reproduction in aflatoxin-producing Aspergillus nomius. Mycologia. 103: 174-83. PMID 20943531 DOI: 10.3852/10-115  0.92
2011 Kaye AC, Moyer JW, Parks EJ, Carbone I, Cubeta MA. Population genetic analysis of Tomato spotted wilt virus on peanut in North Carolina and Virginia. Phytopathology. 101: 147-53. PMID 20839960 DOI: 10.1094/Phyto-01-10-0035  0.92
2011 Abbas HK, Weaver MA, Horn BW, Carbone I, Monacell JT, Shier WT. Selection of Aspergillus flavus isolates for biological control of aflatoxins in corn Toxin Reviews. 30: 59-70. DOI: 10.3109/15569543.2011.591539  0.92
2010 Wu F, Bhatnagar D, Bui-Klimke T, Carbone I, Hellmich R, Munkvold G, Paul P, Payne G, Takle E. Climate change impacts on mycotoxin risks in US maize World Mycotoxin Journal. 4: 79-93. DOI: 10.3920/Wmj2010.1246  0.92
2009 Moore GG, Singh R, Horn BW, Carbone I. Recombination and lineage-specific gene loss in the aflatoxin gene cluster of Aspergillus flavus. Molecular Ecology. 18: 4870-87. PMID 19895419 DOI: 10.1111/J.1365-294X.2009.04414.X  0.92
2009 Horn BW, Moore GG, Carbone I. Sexual reproduction in Aspergillus flavus. Mycologia. 101: 423-9. PMID 19537215 DOI: 10.3852/09-011  0.92
2009 Parks R, Carbone I, Murphy JP, Cowger C. Population genetic analysis of an Eastern U.S. wheat powdery mildew population reveals geographic subdivision and recent common ancestry with U.K. and Israeli populations. Phytopathology. 99: 840-9. PMID 19522582 DOI: 10.1094/Phyto-99-7-0840  0.92
2009 Lourenço V, Moya A, González-Candelas F, Carbone I, Maffia LA, Mizubuti ES. Molecular diversity and evolutionary processes of Alternaria solani in Brazil inferred using genealogical and coalescent approaches. Phytopathology. 99: 765-74. PMID 19453237 DOI: 10.1094/Phyto-99-6-0765  0.92
2009 Horn BW, Ramirez-Prado JH, Carbone I. The sexual state of Aspergillus parasiticus. Mycologia. 101: 275-80. PMID 19397202 DOI: 10.3852/08-205  0.92
2009 Goss EM, Carbone I, Grünwald NJ. Ancient isolation and independent evolution of the three clonal lineages of the exotic sudden oak death pathogen Phytophthora ramorum. Molecular Ecology. 18: 1161-74. PMID 19222751 DOI: 10.1111/J.1365-294X.2009.04089.X  0.92
2009 Horn BW, Ramirez-Prado JH, Carbone I. Sexual reproduction and recombination in the aflatoxin-producing fungus Aspergillus parasiticus. Fungal Genetics and Biology : Fg & B. 46: 169-75. PMID 19038353 DOI: 10.1016/J.Fgb.2008.11.004  0.92
2008 Charlton ND, Carbone I, Tavantzis SM, Cubeta MA. Phylogenetic relatedness of the M2 double-stranded RNA in Rhizoctonia fungi. Mycologia. 100: 555-64. PMID 18833749 DOI: 10.3852/07-108R  0.92
2008 Ramirez-Prado JH, Moore GG, Horn BW, Carbone I. Characterization and population analysis of the mating-type genes in Aspergillus flavus and Aspergillus parasiticus. Fungal Genetics and Biology : Fg & B. 45: 1292-9. PMID 18652906 DOI: 10.1016/J.Fgb.2008.06.007  0.92
2008 Powell AJ, Conant GC, Brown DE, Carbone I, Dean RA. Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens. Bmc Genomics. 9: 147. PMID 18373860 DOI: 10.1186/1471-2164-9-147  0.92
2008 Clark CM, Carbone I. Chloroplast DNA phylogeography in long-lived Huon pine, a Tasmanian rain forest conifer Canadian Journal of Forest Research. 38: 1576-1589. DOI: 10.1139/X07-209  0.92
2008 Parks R, Carbone I, Murphy JP, Marshall D, Cowger C. Virulence structure of the eastern U.S. wheat powdery mildew population Plant Disease. 92: 1074-1082. DOI: 10.1094/PDIS-92-7-1074  0.92
2007 Malvárez G, Carbone I, Grünwald NJ, Subbarao KV, Schafer M, Kohn LM. New Populations of Sclerotinia sclerotiorum from Lettuce in California and Peas and Lentils in Washington. Phytopathology. 97: 470-83. PMID 18943288 DOI: 10.1094/Phyto-97-4-0470  0.92
2007 Moser JM, Carbone I, Arasu P, Gibson G. Impact of population structure on genetic diversity of a potential vaccine target in the canine hookworm (Ancylostoma caninum). The Journal of Parasitology. 93: 796-805. PMID 17918358 DOI: 10.1645/Ge-1096R.1  0.92
2007 Carbone I, Jakobek JL, Ramirez-Prado JH, Horn BW. Recombination, balancing selection and adaptive evolution in the aflatoxin gene cluster of Aspergillus parasiticus. Molecular Ecology. 16: 4401-17. PMID 17725568 DOI: 10.1111/J.1365-294X.2007.03464.X  0.92
2007 Carbone I, Ramirez-Prado JH, Jakobek JL, Horn BW. Gene duplication, modularity and adaptation in the evolution of the aflatoxin gene cluster. Bmc Evolutionary Biology. 7: 111. PMID 17620135 DOI: 10.1186/1471-2148-7-111  0.92
2007 Gómez-Alpizar L, Carbone I, Ristaino JB. An Andean origin of Phytophthora infestans inferred from mitochondrial and nuclear gene genealogies. Proceedings of the National Academy of Sciences of the United States of America. 104: 3306-11. PMID 17360643 DOI: 10.1073/Pnas.0611479104  0.92
2007 Deng J, Carbone I, Dean RA. The evolutionary history of cytochrome P450 genes in four filamentous Ascomycetes. Bmc Evolutionary Biology. 7: 30. PMID 17324274 DOI: 10.1186/1471-2148-7-30  0.92
2006 Aylor DL, Price EW, Carbone I. SNAP: Combine and Map modules for multilocus population genetic analysis Bioinformatics. 22: 1399-1401. PMID 16601003 DOI: 10.1093/Bioinformatics/Btl136  0.92
2005 Charles L, Carbone I, Davies KG, Bird D, Burke M, Kerry BR, Opperman CH. Phylogenetic analysis of Pasteuria penetrans by use of multiple genetic loci. Journal of Bacteriology. 187: 5700-8. PMID 16077116 DOI: 10.1128/Jb.187.16.5700-5708.2005  0.92
2005 Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YI, Carbone I, Brown D, Yeon YO, et al. The genome sequence of the rice blast fungus Magnaporthe grisea Nature. 434: 980-986. PMID 15846337 DOI: 10.1038/Nature03449  0.92
2005 Price EW, Carbone I. SNAP: workbench management tool for evolutionary population genetic analysis. Bioinformatics (Oxford, England). 21: 402-4. PMID 15353448 DOI: 10.1093/Bioinformatics/Bti003  0.92
2004 Carbone I, Liu YC, Hillman BI, Milgroom MG. Recombination and migration of Cryphonectria hypovirus 1 as inferred from gene genealogies and the coalescent. Genetics. 166: 1611-29. PMID 15126384 DOI: 10.1534/Genetics.166.4.1611  0.92
2004 Carbone I, Kohn L. Inferring Process from Pattern in Fungal Population Genetics Applied Mycology and Biotechnology. 4: 29-58. DOI: 10.1016/S1874-5334(04)80005-4  0.92
2002 Phillips DV, Carbone I, Gold SE, Kohn LM. Phylogeography and Genotype-Symptom Associations in Early and Late Season Infections of Canola by Sclerotinia sclerotiorum. Phytopathology. 92: 785-93. PMID 18943276 DOI: 10.1094/Phyto.2002.92.7.785  0.92
2001 Carbone I, Kohn LM. Multilocus nested haplotype networks extended with DNA fingerprints show common origin and fine-scale, ongoing genetic divergence in a wild microbial metapopulation. Molecular Ecology. 10: 2409-22. PMID 11742545 DOI: 10.1046/J.0962-1083.2001.01380.X  0.92
2001 Carbone I, Kohn LM. A microbial population-species interface: nested cladistic and coalescent inference with multilocus data. Molecular Ecology. 10: 947-64. PMID 11348503 DOI: 10.1046/J.1365-294X.2001.01244.X  0.92
1999 Carbone I, Anderson JB, Kohn LM. PATTERNS OF DESCENT IN CLONAL LINEAGES AND THEIR MULTILOCUS FINGERPRINTS ARE RESOLVED WITH COMBINED GENE GENEALOGIES. Evolution; International Journal of Organic Evolution. 53: 11-21. PMID 28565180 DOI: 10.1111/J.1558-5646.1999.Tb05329.X  0.92
1999 Carbone I, Kohn LM. A method for designing primer sets for speciation studies in filamentous ascomycetes Mycologia. 91: 553-556. DOI: 10.2307/3761358  0.92
1999 Carbone I, Anderson JB, Kohn LM. Patterns of descent in clonal lineages and their multilocus fingerprints are resolved with combined gene genealogies Evolution. 53: 11-21.  0.92
1995 Carbone I, Anderson JB, Kohn LM. A group-I intron in the mitochondrial small subunit ribosomal RNA gene of Sclerotinia sclerotiorum. Current Genetics. 27: 166-76. PMID 7788720 DOI: 10.1007/Bf00313431  0.92
1990 Kohn LM, Carbone I, Anderson JB. Mycelial interactions inSclerotinia sclerotiorum Experimental Mycology. 14: 255-267. DOI: 10.1016/0147-5975(90)90023-M  0.92
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