David Miller - Publications

Affiliations: 
Vanderbilt University, Nashville, TN 
Website:
http://www.mc.vanderbilt.edu/vumcdept/cellbio/miller/

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Smith JJ, Taylor SR, Blum JA, Feng W, Collings R, Gitler AD, Miller DM, Kratsios P. A molecular atlas of adult C. elegans motor neurons reveals ancient diversity delineated by conserved transcription factor codes. Cell Reports. 43: 113857. PMID 38421866 DOI: 10.1016/j.celrep.2024.113857  0.314
2021 Taylor SR, Santpere G, Weinreb A, Barrett A, Reilly MB, Xu C, Varol E, Oikonomou P, Glenwinkel L, McWhirter R, Poff A, Basavaraju M, Rafi I, Yemini E, Cook SJ, ... ... Miller DM, et al. Molecular topography of an entire nervous system. Cell. PMID 34237253 DOI: 10.1016/j.cell.2021.06.023  0.36
2021 Glenwinkel L, Taylor SR, Langebeck-Jensen K, Pereira L, Reilly MB, Basavaraju M, Rafi I, Yemini E, Pocock R, Sestan N, Hammarlund M, Miller DM, Hobert O. In silico analysis of the transcriptional regulatory logic of neuronal identity specification throughout the nervous system. Elife. 10. PMID 34165430 DOI: 10.7554/eLife.64906  0.334
2019 Cuentas-Condori A, Mulcahy B, He S, Palumbos S, Zhen M, Miller DM. neurons have functional dendritic spines. Elife. 8. PMID 31584430 DOI: 10.7554/Elife.47918  0.466
2019 Sundararajan L, Smith CJ, Watson JD, Millis BA, Tyska MJ, Miller DM. Actin assembly and non-muscle myosin activity drive dendrite retraction in an UNC-6/Netrin dependent self-avoidance response. Plos Genetics. 15: e1008228. PMID 31220078 DOI: 10.1371/Journal.Pgen.1008228  0.538
2019 He S, Cuentas-Condori A, Miller DM. NATF (Native And Tissue-Specific Fluorescence): A Strategy for Bright, Tissue-Specific GFP Labeling of Native Proteins in . Genetics. PMID 30952669 DOI: 10.1534/Genetics.119.302063  0.426
2018 Hammarlund M, Hobert O, Miller DM, Sestan N. The CeNGEN Project: The Complete Gene Expression Map of an Entire Nervous System. Neuron. 99: 430-433. PMID 30092212 DOI: 10.1016/J.Neuron.2018.07.042  0.308
2018 Hammarlund M, Hobert O, Miller DM, Sestan N. The CeNGEN Project: The Complete Gene Expression Map of an Entire Nervous System. Neuron. 99: 430-433. PMID 30092212 DOI: 10.1016/j.neuron.2018.07.042  0.308
2017 Bermingham DP, Hardaway JA, Refai O, Marks CR, Snider SL, Sturgeon SM, Spencer WC, Colbran RJ, Miller DM, Blakely RD. The Atypical MAP Kinase SWIP-13/ERK8 Regulates Dopamine Transporters Through a Rho-Dependent Mechanism. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 28842414 DOI: 10.1523/Jneurosci.1582-17.2017  0.67
2017 Lim M, Chitturi J, Laskova V, Meng J, Findeis D, Wiekenberg A, Mulcahy B, Luo L, Li Y, Lu Y, Hung W, Qu Y, Ho C, Holmyard D, Ji N, ... ... Miller DM, et al. Correction: Neuroendocrine modulation sustains the C. elegans forward motor state. Elife. 6. PMID 28271995 DOI: 10.7554/Elife.26528  0.425
2015 He S, Philbrook A, McWhirter R, Gabel CV, Taub DG, Carter MH, Hanna IM, Francis MM, Miller DM. Transcriptional Control of Synaptic Remodeling through Regulated Expression of an Immunoglobulin Superfamily Protein. Current Biology : Cb. PMID 26387713 DOI: 10.1016/J.Cub.2015.08.022  0.514
2015 Hardaway JA, Sturgeon SM, Snarrenberg CL, Li Z, Xu XZ, Bermingham DP, Odiase P, Spencer WC, Miller DM, Carvelli L, Hardie SL, Blakely RD. Glial Expression of the Caenorhabditis elegans Gene swip-10 Supports Glutamate Dependent Control of Extrasynaptic Dopamine Signaling. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 9409-23. PMID 26109664 DOI: 10.1523/JNEUROSCI.0800-15.2015  0.714
2014 Spencer WC, McWhirter R, Miller T, Strasbourger P, Thompson O, Hillier LW, Waterston RH, Miller DM. Isolation of specific neurons from C. elegans larvae for gene expression profiling. Plos One. 9: e112102. PMID 25372608 DOI: 10.1371/journal.pone.0112102  0.78
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, ... ... Miller DM, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/Nature13424  0.758
2013 Smith CJ, O'Brien T, Chatzigeorgiou M, Spencer WC, Feingold-Link E, Husson SJ, Hori S, Mitani S, Gottschalk A, Schafer WR, Miller DM. Sensory neuron fates are distinguished by a transcriptional switch that regulates dendrite branch stabilization. Neuron. 79: 266-80. PMID 23889932 DOI: 10.1016/J.Neuron.2013.05.009  0.735
2012 Husson SJ, Costa WS, Wabnig S, Stirman JN, Watson JD, Spencer WC, Akerboom J, Looger LL, Treinin M, Miller DM, Lu H, Gottschalk A. Optogenetic analysis of a nociceptor neuron and network reveals ion channels acting downstream of primary sensors. Current Biology : Cb. 22: 743-52. PMID 22483941 DOI: 10.1016/J.Cub.2012.02.066  0.754
2012 Smith CJ, Watson JD, VanHoven MK, Colón-Ramos DA, Miller DM. Netrin (UNC-6) mediates dendritic self-avoidance. Nature Neuroscience. 15: 731-7. PMID 22426253 DOI: 10.1038/Nn.3065  0.556
2011 Petersen SC, Watson JD, Richmond JE, Sarov M, Walthall WW, Miller DM. A transcriptional program promotes remodeling of GABAergic synapses in Caenorhabditis elegans. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 15362-75. PMID 22031882 DOI: 10.1523/Jneurosci.3181-11.2011  0.593
2011 Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, ... ... Miller D, et al. The developmental transcriptome of Drosophila melanogaster. Nature. 471: 473-9. PMID 21179090 DOI: 10.1038/Nature09715  0.634
2011 Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, et al. Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Research. 21: 276-85. PMID 21177971 DOI: 10.1101/Gr.110189.110  0.57
2011 Spencer WC, Zeller G, Watson JD, Henz SR, Watkins KL, McWhirter RD, Petersen S, Sreedharan VT, Widmer C, Jo J, Reinke V, Petrella L, Strome S, Von Stetina SE, Katz M, ... ... Miller DM, et al. A spatial and temporal map of C. elegans gene expression. Genome Research. 21: 325-41. PMID 21177967 DOI: 10.1101/Gr.114595.110  0.772
2011 Hallem EA, Spencer WC, McWhirter RD, Zeller G, Henz SR, Rätsch G, Miller DM, Horvitz HR, Sternberg PW, Ringstad N. Receptor-type guanylate cyclase is required for carbon dioxide sensation by Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 108: 254-9. PMID 21173231 DOI: 10.1073/Pnas.1017354108  0.74
2010 Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, ... ... Miller DM, et al. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science (New York, N.Y.). 330: 1775-87. PMID 21177976 DOI: 10.1126/Science.1196914  0.737
2010 Hammock EA, Eagleson KL, Barlow S, Earls LR, Miller DM, Levitt P. Homologs of genes expressed in Caenorhabditis elegans GABAergic neurons are also found in the developing mouse forebrain. Neural Development. 5: 32. PMID 21122108 DOI: 10.1186/1749-8104-5-32  0.358
2010 Earls LR, Hacker ML, Watson JD, Miller DM. Coenzyme Q protects Caenorhabditis elegans GABA neurons from calcium-dependent degeneration. Proceedings of the National Academy of Sciences of the United States of America. 107: 14460-5. PMID 20663955 DOI: 10.1073/Pnas.0910630107  0.582
2010 Smith CJ, Watson JD, Spencer WC, O'Brien T, Cha B, Albeg A, Treinin M, Miller DM. Time-lapse imaging and cell-specific expression profiling reveal dynamic branching and molecular determinants of a multi-dendritic nociceptor in C. elegans. Developmental Biology. 345: 18-33. PMID 20537990 DOI: 10.1016/J.Ydbio.2010.05.502  0.784
2010 Chatzigeorgiou M, Yoo S, Watson JD, Lee WH, Spencer WC, Kindt KS, Hwang SW, Miller DM, Treinin M, Driscoll M, Schafer WR. Specific roles for DEG/ENaC and TRP channels in touch and thermosensation in C. elegans nociceptors. Nature Neuroscience. 13: 861-8. PMID 20512132 DOI: 10.1038/Nn.2581  0.746
2009 Meissner B, Warner A, Wong K, Dube N, Lorch A, McKay SJ, Khattra J, Rogalski T, Somasiri A, Chaudhry I, Fox RM, Miller DM, Baillie DL, Holt RA, Jones SJ, et al. An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans. Plos Genetics. 5: e1000537. PMID 19557190 DOI: 10.1371/Journal.Pgen.1000537  0.585
2008 Shinzato C, Iguchi A, Hayward DC, Technau U, Ball EE, Miller DJ. Sox genes in the coral Acropora millepora: divergent expression patterns reflect differences in developmental mechanisms within the Anthozoa. Bmc Evolutionary Biology. 8: 311. PMID 19014479 DOI: 10.1186/1471-2148-8-311  0.304
2008 Watson JD, Wang S, Von Stetina SE, Spencer WC, Levy S, Dexheimer PJ, Kurn N, Heath JD, Miller DM. Complementary RNA amplification methods enhance microarray identification of transcripts expressed in the C. elegans nervous system. Bmc Genomics. 9: 84. PMID 18284693 DOI: 10.1186/1471-2164-9-84  0.766
2007 Fox RM, Watson JD, Von Stetina SE, McDermott J, Brodigan TM, Fukushige T, Krause M, Miller DM. The embryonic muscle transcriptome of Caenorhabditis elegans. Genome Biology. 8: R188. PMID 17848203 DOI: 10.1186/Gb-2007-8-9-R188  0.574
2007 Von Stetina SE, Watson JD, Fox RM, Olszewski KL, Spencer WC, Roy PJ, Miller DM. Cell-specific microarray profiling experiments reveal a comprehensive picture of gene expression in the C. elegans nervous system. Genome Biology. 8: R135. PMID 17612406 DOI: 10.1186/Gb-2007-8-7-R135  0.788
2006 Varadan V, Miller DM, Anastassiou D. Computational inference of the molecular logic for synaptic connectivity in C. elegans. Bioinformatics (Oxford, England). 22: e497-506. PMID 16873513 DOI: 10.1093/Bioinformatics/Btl224  0.303
2005 Fox RM, Von Stetina SE, Barlow SJ, Shaffer C, Olszewski KL, Moore JH, Dupuy D, Vidal M, Miller DM. A gene expression fingerprint of C. elegans embryonic motor neurons. Bmc Genomics. 6: 42. PMID 15780142 DOI: 10.1186/1471-2164-6-42  0.345
2002 Esmaeili B, Ross JM, Neades C, Miller DM, Ahringer J. The C. elegans even-skipped homologue, vab-7, specifies DB motoneurone identity and axon trajectory. Development (Cambridge, England). 129: 853-62. PMID 11861469  0.302
2001 Bianchi L, Miller DM, George AL. Expression of a CIC chloride channel in Caenorhabditis elegans gamma-aminobutyric acid-ergic neurons. Neuroscience Letters. 299: 177-80. PMID 11165764 DOI: 10.1016/S0304-3940(01)01525-7  0.304
1999 Miller DM, Desai NS, Hardin DC, Piston DW, Patterson GH, Fleenor J, Xu S, Fire A. Two-color GFP expression system for C. elegans. Biotechniques. 26: 914-8, 920-1. PMID 10337485 DOI: 10.2144/99265Rr01  0.549
1994 McDonald TJ, Tu E, Brenner S, Zabel P, Behme M, Panchal C, Hramiak I, Barnett WB, Miller D, Dupré J. Canine, human, and rat plasma insulin responses to galanin administration: species response differences. The American Journal of Physiology. 266: E612-7. PMID 7513957  0.529
1992 Miller DM, Shen MM, Shamu CE, Bürglin TR, Ruvkun G, Dubois ML, Ghee M, Wilson L. C. elegans unc-4 gene encodes a homeodomain protein that determines the pattern of synaptic input to specific motor neurons. Nature. 355: 841-5. PMID 1347150 DOI: 10.1038/355841A0  0.307
1989 Maruyama IN, Miller DM, Brenner S. Myosin heavy chain gene amplification as a suppressor mutation in Caenorhabditis elegans. Molecular & General Genetics : Mgg. 219: 113-8. PMID 2575705 DOI: 10.1007/Bf00261165  0.747
1985 Epstein HF, Miller DM, Ortiz I, Berliner GC. Myosin and paramyosin are organized about a newly identified core structure. The Journal of Cell Biology. 100: 904-15. PMID 3972901 DOI: 10.1083/Jcb.100.3.904  0.675
1983 Miller DM, Ortiz I, Berliner GC, Epstein HF. Differential localization of two myosins within nematode thick filaments. Cell. 34: 477-90. PMID 6352051 DOI: 10.1016/0092-8674(83)90381-1  0.657
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