| Year |
Citation |
Score |
| 2023 |
Shook MS, Lu X, Chen X, Parameswaran S, Edsall L, Trimarchi MP, Ernst K, Granitto M, Forney C, Donmez OA, Diouf AA, VonHandorf A, Rothenberg ME, Weirauch MT, Kottyan LC. Systematic identification of genotype-dependent enhancer variants in eosinophilic esophagitis. American Journal of Human Genetics. PMID 38183988 DOI: 10.1016/j.ajhg.2023.12.008 |
0.307 |
|
| 2023 |
Cain B, Webb J, Yuan Z, Cheung D, Lim HW, Kovall RA, Weirauch MT, Gebelein B. Prediction of cooperative homeodomain DNA binding sites from high-throughput-SELEX data. Nucleic Acids Research. PMID 37114997 DOI: 10.1093/nar/gkad318 |
0.31 |
|
| 2023 |
Cazares TA, Rizvi FW, Iyer B, Chen X, Kotliar M, Bejjani AT, Wayman JA, Donmez O, Wronowski B, Parameswaran S, Kottyan LC, Barski A, Weirauch MT, Prasath VBS, Miraldi ER. maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. Plos Computational Biology. 19: e1010863. PMID 36719906 DOI: 10.1371/journal.pcbi.1010863 |
0.308 |
|
| 2022 |
Sawyer RP, Stone HK, Salim H, Lu X, Weirauch MT, Kottyan L. Frontotemporal degeneration genetic risk loci and transcription regulation as a possible mechanistic link to disease risk. Medicine. 101: e31078. PMID 36253972 DOI: 10.1097/MD.0000000000031078 |
0.315 |
|
| 2022 |
Zhao Y, Vartak SV, Conte A, Wang X, Garcia DA, Stevens E, Kyoung Jung S, Kieffer-Kwon KR, Vian L, Stodola T, Moris F, Chopp L, Preite S, Schwartzberg PL, Kulinski JM, ... ... Weirauch MT, et al. "Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes. Molecular Cell. PMID 35863348 DOI: 10.1016/j.molcel.2022.06.029 |
0.362 |
|
| 2022 |
Zhou T, Zhu X, Ye Z, Wang YF, Yao C, Xu N, Zhou M, Ma J, Qin Y, Shen Y, Tang Y, Yin Z, Xu H, Zhang Y, Zang X, ... ... Weirauch MT, et al. Lupus enhancer risk variant causes dysregulation of IRF8 through cooperative lncRNA and DNA methylation machinery. Nature Communications. 13: 1855. PMID 35388006 DOI: 10.1038/s41467-022-29514-y |
0.329 |
|
| 2021 |
Felton JM, Vallabh S, Parameswaran S, Edsall LE, Ernst K, Wronowski B, Malik A, Kotliar M, Weirauch MT, Barski A, Fulkerson PC, Rothenberg ME. Epigenetic Analysis of the Chromatin Landscape Identifies a Repertoire of Murine Eosinophil-Specific PU.1-Bound Enhancers. Journal of Immunology (Baltimore, Md. : 1950). PMID 34330753 DOI: 10.4049/jimmunol.2000207 |
0.366 |
|
| 2021 |
Hass MR, Brissette D, Parameswaran S, Pujato M, Donmez O, Kottyan LC, Weirauch MT, Kopan R. Runx1 shapes the chromatin landscape via a cascade of direct and indirect targets. Plos Genetics. 17: e1009574. PMID 34111109 DOI: 10.1371/journal.pgen.1009574 |
0.344 |
|
| 2021 |
Lu X, Chen X, Forney C, Donmez O, Miller D, Parameswaran S, Hong T, Huang Y, Pujato M, Cazares T, Miraldi ER, Ray JP, de Boer CG, Harley JB, Weirauch MT, et al. Global discovery of lupus genetic risk variant allelic enhancer activity. Nature Communications. 12: 1611. PMID 33712590 DOI: 10.1038/s41467-021-21854-5 |
0.314 |
|
| 2020 |
Elliott KH, Chen X, Salomone J, Chaturvedi P, Schultz PA, Balchand SK, Servetas JD, Zuniga A, Zeller R, Gebelein B, Weirauch MT, Peterson KA, Brugmann SA. Gli3 utilizes Hand2 to synergistically regulate tissue-specific transcriptional networks. Elife. 9. PMID 33006313 DOI: 10.7554/eLife.56450 |
0.35 |
|
| 2020 |
Maezawa S, Sakashita A, Yukawa M, Chen X, Takahashi K, Alavattam KG, Nakata I, Weirauch MT, Barski A, Namekawa SH. Super-enhancer switching drives a burst in gene expression at the mitosis-to-meiosis transition. Nature Structural & Molecular Biology. PMID 32895557 DOI: 10.1038/S41594-020-0488-3 |
0.4 |
|
| 2020 |
Mukherjee S, Chatuverdi P, Rankin SA, Fish MB, Wlizla M, Paraiso KD, MacDonald M, Chen X, Weirauch MT, Blitz IL, Cho KW, Zorn AM. Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. Elife. 9. PMID 32894225 DOI: 10.7554/Elife.58029 |
0.367 |
|
| 2020 |
Stevens ML, Zhang Z, Johansson E, Ray S, Jagpal A, Ruff BP, Kothari A, He H, Martin LJ, Ji H, Wikenheiser-Brokamp K, Weirauch MT, Supp DM, Biagini Myers JM, Khurana Hershey GK. Disease-associated KIF3A variants alter gene methylation and expression impacting skin barrier and atopic dermatitis risk. Nature Communications. 11: 4092. PMID 32796837 DOI: 10.1038/S41467-020-17895-X |
0.305 |
|
| 2020 |
Liu X, Hong T, Parameswaran S, Ernst K, Marazzi I, Weirauch MT, Fuxman Bass JI. Human Virus Transcriptional Regulators. Cell. 182: 24-37. PMID 32649876 DOI: 10.1016/J.Cell.2020.06.023 |
0.369 |
|
| 2020 |
Jennings EC, Korthauer MW, Hendershot JM, Bailey ST, Weirauch MT, Ribeiro JM, Benoit JB. Molecular mechanisms underlying milk production and viviparity in the cockroach, Diploptera punctata. Insect Biochemistry and Molecular Biology. 103333. PMID 32119906 DOI: 10.1016/J.Ibmb.2020.103333 |
0.307 |
|
| 2020 |
Sirvent S, Vallejo AF, Davies J, Clayton K, Wu Z, Woo J, Riddell J, Chaudhri VK, Stumpf P, Nazlamova LA, Wheway G, Rose-Zerilli M, West J, Pujato M, Chen X, ... ... Weirauch MT, et al. Genomic programming of IRF4-expressing human Langerhans cells. Nature Communications. 11: 313. PMID 31949143 DOI: 10.1038/S41467-019-14125-X |
0.38 |
|
| 2020 |
Kottyan LC, Parameswaran S, Weirauch MT, Rothenberg ME, Martin LJ. The genetic etiology of eosinophilic esophagitis. The Journal of Allergy and Clinical Immunology. 145: 9-15. PMID 31910986 DOI: 10.1016/J.Jaci.2019.11.013 |
0.335 |
|
| 2020 |
Emadi B, Carter M, Eswar S, Chen X, Laurynenka V, Parameswaran S, Kaufman KM, Namjou B, Kottyan LC, Weirauch M, Harley J. P136 Epstein-Barr Virus Transcription Co-Factors Bind To Many Inflammatory Bowel Disease Risk Loci Gastroenterology. 158. DOI: 10.1053/J.Gastro.2019.11.142 |
0.349 |
|
| 2020 |
Eapen A, Lu X, Forney C, Parameswaran S, Ray J, Weirauch M, Kottyan L. Massively Parallel Reporter Assays (MPRAs) Identify Allelic Transcriptional Dysregulation in Atopic Dermatitis The Journal of Allergy and Clinical Immunology. 145. DOI: 10.1016/J.Jaci.2019.12.289 |
0.362 |
|
| 2019 |
Yukawa M, Jagannathan S, Vallabh S, Kartashov AV, Chen X, Weirauch MT, Barski A. AP-1 activity induced by co-stimulation is required for chromatin opening during T cell activation. The Journal of Experimental Medicine. PMID 31653690 DOI: 10.1084/Jem.20182009 |
0.36 |
|
| 2019 |
Liu X, Helenius D, Skotte L, Beaumont RN, Wielscher M, Geller F, Juodakis J, Mahajan A, Bradfield JP, Lin FTJ, Vogelezang S, Bustamante M, Ahluwalia TS, Pitkänen N, Wang CA, ... ... Weirauch MT, et al. Variants in the fetal genome near pro-inflammatory cytokine genes on 2q13 associate with gestational duration. Nature Communications. 10: 3927. PMID 31477735 DOI: 10.1038/S41467-019-11881-8 |
0.308 |
|
| 2019 |
Lambert SA, Yang AWH, Sasse A, Cowley G, Albu M, Caddick MX, Morris QD, Weirauch MT, Hughes TR. Similarity regression predicts evolution of transcription factor sequence specificity. Nature Genetics. PMID 31133749 DOI: 10.1038/S41588-019-0411-1 |
0.446 |
|
| 2019 |
Burleson JD, Siniard D, Yadagiri VK, Chen X, Weirauch MT, Ruff BP, Brandt EB, Hershey GKK, Ji H. TET1 contributes to allergic airway inflammation and regulates interferon and aryl hydrocarbon receptor signaling pathways in bronchial epithelial cells. Scientific Reports. 9: 7361. PMID 31089182 DOI: 10.1038/S41598-019-43767-6 |
0.374 |
|
| 2019 |
Chidambaran V, Zhang X, Geisler K, Stubbeman BL, Chen X, Weirauch MT, Meller J, Ji H. Enrichment of genomic pathways based on differential DNA methylation associated with chronic postsurgical pain and anxiety in children - a prospective, pilot study. The Journal of Pain : Official Journal of the American Pain Society. PMID 30639570 DOI: 10.1016/J.Jpain.2018.12.008 |
0.351 |
|
| 2019 |
Miller DE, Forney C, Rochman M, Cranert S, Habel J, Rymer J, Lynch A, Schroeder C, Lee J, Sauder A, Smith Q, Chawla M, Trimarchi MP, Lu X, Fjellman E, ... ... Weirauch MT, et al. Genetic, Inflammatory, and Epithelial Cell Differentiation Factors Control Expression of Human Calpain-14. G3 (Bethesda, Md.). PMID 30626591 DOI: 10.1534/G3.118.200901 |
0.338 |
|
| 2019 |
Eapen A, Parameswaran S, Forney C, Miller D, Donmez O, Dunn K, Chawla M, Sauder A, Fjellman E, Pujato M, Lu X, Chen X, Bernstein DI, Weirauch MT, Nesbitt Kottyan LC. NFκB transcription factor binding is altered at many Atopic Dermatitis disease loci Journal of Allergy and Clinical Immunology. 143: AB65. DOI: 10.1016/J.Jaci.2018.12.199 |
0.411 |
|
| 2018 |
Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, ... ... Weirauch MT, et al. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature. PMID 30464347 DOI: 10.1038/S41586-018-0734-6 |
0.373 |
|
| 2018 |
Modur V, Singh N, Mohanty V, Chung E, Muhammad B, Choi K, Chen X, Chetal K, Ratner N, Salomonis N, Weirauch MT, Waltz S, Huang G, Privette-Vinnedge L, Park JS, et al. Defective transcription elongation in a subset of cancers confers immunotherapy resistance. Nature Communications. 9: 4410. PMID 30353012 DOI: 10.1038/S41467-018-06810-0 |
0.317 |
|
| 2018 |
Muench DE, Ferchen K, Velu CS, Pradhan K, Chetal K, Chen X, Weirauch MT, Colmenares C, Verma A, Salomonis N, Grimes HL. controls MDS-associated chronic TGFβ signaling, aberrant splicing, and stem cell fitness. Blood. PMID 30249787 DOI: 10.1182/Blood-2018-06-860890 |
0.327 |
|
| 2018 |
Zhang X, Chen X, Weirauch MT, Zhang X, Burleson JD, Brandt EB, Ji H. Diesel exhaust and house dust mite allergen lead to common changes in the airway methylome and hydroxymethylome. Environmental Epigenetics. 4: dvy020. PMID 30090644 DOI: 10.1093/Eep/Dvy020 |
0.377 |
|
| 2018 |
Boni AC, Ambrósio DL, Cupertino FB, Montenegro-Montero A, Virgilio S, Freitas FZ, Corrocher FA, Gonçalves RD, Yang A, Weirauch MT, Hughes TR, Larrondo LF, Bertolini MC. Neurospora crassa developmental control mediated by the FLB-3 transcription factor. Fungal Biology. 122: 570-582. PMID 29801802 DOI: 10.1016/J.Funbio.2018.01.004 |
0.711 |
|
| 2018 |
Zandvakili A, Campbell I, Gutzwiller LM, Weirauch MT, Gebelein B. Degenerate Pax2 and Senseless binding motifs improve detection of low-affinity sites required for enhancer specificity. Plos Genetics. 14: e1007289. PMID 29617378 DOI: 10.1371/Journal.Pgen.1007289 |
0.419 |
|
| 2018 |
Lambert SA, Jolma A, Campitelli LF, Das PK, Yin Y, Albu M, Chen X, Taipale J, Hughes TR, Weirauch MT. The Human Transcription Factors. Cell. 172: 650-665. PMID 29425488 DOI: 10.1016/j.cell.2018.01.029 |
0.387 |
|
| 2018 |
Barreyro L, Sampson A, Hueneman K, Bolanos LC, Pujato M, Chutipongtanate S, Wyder M, Haffey W, Choi K, Neelamraju Y, Smith MA, Niederkorn M, Ramesh V, Muto T, O'Brien E, ... ... Weirauch MT, et al. Therapeutic Targeting of the Ubiquitin Conjugating Enzyme UBE2N in Myeloid Malignancies Blood. 132: 4050-4050. DOI: 10.1182/Blood-2018-99-115359 |
0.313 |
|
| 2018 |
Venkatasubramanian M, Chen X, Chetal K, Kulkarni A, Myers KC, Weirauch MT, Grimes HL, Salomonis N. A Prognostic Human Splicing Signature That Precurses Leukemia Blood. 132: 877-877. DOI: 10.1182/Blood-2018-99-115000 |
0.358 |
|
| 2018 |
Harley J, Chen X, Pujato M, Miller D, Maddox A, Forney C, Magnusen A, Lynch A, Chetal K, Yukawa M, Barski A, Salomonis N, Kaufman K, Kottyan L, Weirauch M. GG-09 A role for EBNA2 in mechanisms that are responsible for lupus and other autoimmune diseases Lupus Science & Medicine. 5. DOI: 10.1136/Lupus-2018-Lsm.96 |
0.348 |
|
| 2018 |
Lummus ZL, Kesavalu B, Kaufman K, Yao J, Weirauch MT, Kottyan LC, Miller D, Cartier A, Cruz M, Lemiere C, Muñoz X, Quirce S, Sastre J, Tarlo SM, Bernstein DI. Regulatory Variants of ATF3, CDH17 and FAM71A are Risk Factors for Diisocyanate Induced Occupational Asthma (DA) Journal of Allergy and Clinical Immunology. 141: AB198. DOI: 10.1016/J.Jaci.2017.12.627 |
0.303 |
|
| 2018 |
Meibers HE, Finch G, Gregg RT, Glenn S, Assani KD, Jennings EC, Davies B, Rosendale AJ, Holmes CJ, Gantz JD, Spacht DE, Lee RE, Denlinger DL, Weirauch MT, Benoit JB. Sex- and developmental-specific transcriptomic analyses of the Antarctic mite, Alaskozetes antarcticus, reveal transcriptional shifts underlying oribatid mite reproduction Polar Biology. 42: 357-370. DOI: 10.1007/S00300-018-2427-X |
0.39 |
|
| 2017 |
Tillo D, Ray S, Syed KS, Gaylor MR, He X, Wang J, Assad N, Durell S, Porollo A, Weirauch MT, Vinson C. The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine. Biochemistry. PMID 29072898 DOI: 10.1021/Acs.Biochem.7B00741 |
0.387 |
|
| 2017 |
Lander JM, Supp DM, He H, Martin LJ, Chen X, Weirauch MT, Boyce ST, Kopan R. Analysis of chromatin accessibility in human epidermis identifies putative barrier dysfunction-sensing enhancers. Plos One. 12: e0184500. PMID 28953906 DOI: 10.1371/Journal.Pone.0184500 |
0.405 |
|
| 2017 |
Lin S, Ptasinska A, Chen X, Shrestha M, Assi SA, Chin PS, Imperato MR, Aronow B, Zhang J, Weirauch MT, Bonifer C, Mulloy JC. A FOXO1-induced oncogenic network defines the AML1-ETO pre-leukemic program. Blood. PMID 28710059 DOI: 10.1182/Blood-2016-11-750976 |
0.35 |
|
| 2017 |
Dauber A, Cunha-Silva M, Macedo DB, Brito VN, Abreu AP, Roberts SA, Montenegro LR, Andrew M, Kirby A, Weirauch MT, Labilloy G, Bessa DS, Carroll RS, Jacobs DC, Chappell PE, et al. Paternally Inherited DLK1 Deletion Associated with Familial Central Precocious Puberty. The Journal of Clinical Endocrinology and Metabolism. PMID 28324015 DOI: 10.1210/Jc.2016-3677 |
0.303 |
|
| 2017 |
Vander Lugt B, Riddell J, Khan AA, Hackney JA, Lesch J, DeVoss J, Weirauch MT, Singh H, Mellman I. Transcriptional determinants of tolerogenic and immunogenic states during dendritic cell maturation. The Journal of Cell Biology. PMID 28130292 DOI: 10.1083/Jcb.201512012 |
0.332 |
|
| 2017 |
Lummus ZL, Kaufman K, Weirauch MT, Cartier A, Cruz M, Kesavalu B, Lemiere C, Muñoz X, Perez-Camo I, Quirce S, Sastre J, Yucesoy B, Bernstein DI. Next Generation DNA Sequencing of Novel Loci in Workers with Diisocyanate Asthma (DA) Journal of Allergy and Clinical Immunology. 139: AB187. DOI: 10.1016/J.Jaci.2016.12.609 |
0.306 |
|
| 2016 |
Fang J, Bolanos LC, Choi K, Liu X, Christie S, Akunuru S, Kumar R, Wang D, Chen X, Greis KD, Stoilov P, Filippi MD, Maciejewski JP, Garcia-Manero G, Weirauch MT, et al. Ubiquitination of hnRNPA1 by TRAF6 links chronic innate immune signaling with myelodysplasia. Nature Immunology. PMID 28024152 DOI: 10.1038/Ni.3654 |
0.331 |
|
| 2016 |
Miller DE, Patel ZH, Lu X, Lynch AT, Weirauch MT, Kottyan LC. Screening for Functional Non-coding Genetic Variants Using Electrophoretic Mobility Shift Assay (EMSA) and DNA-affinity Precipitation Assay (DAPA). Journal of Visualized Experiments : Jove. PMID 27585267 DOI: 10.3791/54093 |
0.405 |
|
| 2016 |
Khund-Sayeed S, He X, Holzberg T, Wang J, Rajagopal D, Upadhyay S, Durell SR, Mukherjee S, Weirauch MT, Rose R, Vinson C. 5-Hydroxymethylcytosine in E-box motifs ACAT|GTG and ACAC|GTG increases DNA-binding of the B-HLH transcription factor TCF4. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 27485769 DOI: 10.1039/C6Ib00079G |
0.372 |
|
| 2016 |
Mao AP, Constantinides MG, Mathew R, Zuo Z, Chen X, Weirauch MT, Bendelac A. Multiple layers of transcriptional regulation by PLZF in NKT-cell development. Proceedings of the National Academy of Sciences of the United States of America. PMID 27325774 DOI: 10.1073/Pnas.1601504113 |
0.379 |
|
| 2016 |
Rialdi A, Campisi L, Zhao N, Lagda AC, Pietzsch C, Ho JS, Martinez-Gil L, Fenouil R, Chen X, Edwards M, Metreveli G, Jordan S, Peralta Z, Munoz-Fontela C, Bouvier N, ... ... Weirauch M, et al. Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation. Science (New York, N.Y.). PMID 27127234 DOI: 10.1126/Science.Aad7993 |
0.334 |
|
| 2016 |
Patel Z, Weirauch M, Kottyan LC, Harley JB. GG-03 STAT1-STAT4 association with systemic lupus erythematosus (SLE) Lupus Science & Medicine. 3. DOI: 10.1136/Lupus-2016-000179.55 |
0.461 |
|
| 2015 |
Chen X, Ernst K, Soman F, Borowczak M, Weirauch MT. CressInt: a user-friendly web resource for genome-scale exploration of gene regulation in Arabidopsis thaliana. Current Plant Biology. 3: 48-55. PMID 26855883 DOI: 10.1016/J.Cpb.2015.09.001 |
0.431 |
|
| 2015 |
Bouffi C, Kartashov AV, Schollaert KL, Chen X, Bacon WC, Weirauch MT, Barski A, Fulkerson PC. Transcription Factor Repertoire of Homeostatic Eosinophilopoiesis. Journal of Immunology (Baltimore, Md. : 1950). 195: 2683-95. PMID 26268651 DOI: 10.4049/Jimmunol.1500510 |
0.459 |
|
| 2015 |
Hass MR, Liow HH, Chen X, Sharma A, Inoue YU, Inoue T, Reeb A, Martens A, Fulbright M, Raju S, Stevens M, Boyle S, Park JS, Weirauch MT, Brent MR, et al. SpDamID: Marking DNA Bound by Protein Complexes Identifies Notch-Dimer Responsive Enhancers. Molecular Cell. 59: 685-97. PMID 26257285 DOI: 10.1016/J.Molcel.2015.07.008 |
0.305 |
|
| 2015 |
He X, Syed KS, Tillo D, Mann I, Weirauch MT, Vinson C. GABPα Binding to Overlapping ETS and CRE DNA Motifs Is Enhanced by CREB1: Custom DNA Microarrays. G3 (Bethesda, Md.). 5: 1909-18. PMID 26185160 DOI: 10.1534/G3.115.020248 |
0.416 |
|
| 2015 |
Yucesoy B, Kaufman KM, Lummus ZL, Weirauch MT, Zhang G, Cartier A, Boulet LP, Sastre J, Quirce S, Tarlo SM, Cruz MJ, Munoz X, Harley JB, Bernstein DI. Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma. Toxicological Sciences : An Official Journal of the Society of Toxicology. 146: 192-201. PMID 25918132 DOI: 10.1093/Toxsci/Kfv084 |
0.355 |
|
| 2015 |
Narasimhan K, Lambert SA, Yang AW, Riddell J, Mnaimneh S, Zheng H, Albu M, Najafabadi HS, Reece-Hoyes JS, Fuxman Bass JI, Walhout AJ, Weirauch MT, Hughes TR. Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities. Elife. 4. PMID 25905672 DOI: 10.7554/eLife.06967 |
0.371 |
|
| 2015 |
Lu X, Zoller EE, Weirauch MT, Wu Z, Namjou B, Williams AH, Ziegler JT, Comeau ME, Marion MC, Glenn SB, Adler A, Shen N, Nath SK, Stevens AM, Freedman BI, et al. Lupus Risk Variant Increases pSTAT1 Binding and Decreases ETS1 Expression. American Journal of Human Genetics. 96: 731-9. PMID 25865496 DOI: 10.1016/J.Ajhg.2015.03.002 |
0.403 |
|
| 2015 |
Kottyan LC, Zoller EE, Bene J, Lu X, Kelly JA, Rupert AM, Lessard CJ, Vaughn SE, Marion M, Weirauch MT, Namjou B, Adler A, Rasmussen A, Glenn S, Montgomery CG, et al. The IRF5-TNPO3 association with systemic lupus erythematosus has two components that other autoimmune disorders variably share. Human Molecular Genetics. 24: 582-96. PMID 25205108 DOI: 10.1093/Hmg/Ddu455 |
0.402 |
|
| 2015 |
Fang J, Bolanos L, Choi K, Liu X, Christie S, Akunuru S, Kumar R, Greis K, Stoilov P, Filippi M, Maciejewski JP, Garcia-Manero G, Weirauch M, Salomonis N, Geiger H, et al. Ubiquitin Editing of a Spliceosome Auxiliary Factor By TRAF6 Links Chronic TLR Signaling with Hematopoietic Defects and Myelodysplasia Blood. 126: 143-143. DOI: 10.1182/Blood.V126.23.143.143 |
0.365 |
|
| 2015 |
Moncrieffe H, Lele A, Shams KA, Levy BE, Marion M, Sudman M, Brungs L, Cobb J, Hinks A, Bohnsack J, Wedderburn LR, Haas J-, Videm V, Rygg M, Nordal E, ... ... Weirauch MT, et al. OP0122 Fine Mapping of the CHR 22Q13.1 Juvenile Idiopathic Arthritis Risk Locus Annals of the Rheumatic Diseases. 74: 114-114. DOI: 10.1136/Annrheumdis-2015-Eular.5296 |
0.354 |
|
| 2014 |
Ballester B, Medina-Rivera A, Schmidt D, Gonzàlez-Porta M, Carlucci M, Chen X, Chessman K, Faure AJ, Funnell AP, Goncalves A, Kutter C, Lukk M, Menon S, McLaren WM, Stefflova K, ... ... Weirauch MT, et al. Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways. Elife. 3: e02626. PMID 25279814 DOI: 10.7554/Elife.02626 |
0.381 |
|
| 2014 |
Sullivan AM, Arsovski AA, Lempe J, Bubb KL, Weirauch MT, Sabo PJ, Sandstrom R, Thurman RE, Neph S, Reynolds AP, Stergachis AB, Vernot B, Johnson AK, Haugen E, Sullivan ST, et al. Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana. Cell Reports. 8: 2015-30. PMID 25220462 DOI: 10.1016/J.Celrep.2014.08.019 |
0.303 |
|
| 2014 |
Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 158: 1431-43. PMID 25215497 DOI: 10.1016/J.Cell.2014.08.009 |
0.719 |
|
| 2014 |
Zhang X, Ulm A, Somineni HK, Oh S, Weirauch MT, Zhang HX, Chen X, Lehn MA, Janssen EM, Ji H. DNA methylation dynamics during ex vivo differentiation and maturation of human dendritic cells. Epigenetics & Chromatin. 7: 21. PMID 25161698 DOI: 10.1186/1756-8935-7-21 |
0.373 |
|
| 2014 |
Fuxman Bass JI, Tamburino AM, Mori A, Beittel N, Weirauch MT, Reece-Hoyes JS, Walhout AJ. Transcription factor binding to Caenorhabditis elegans first introns reveals lack of redundancy with gene promoters. Nucleic Acids Research. 42: 153-62. PMID 24068555 DOI: 10.1093/Nar/Gkt858 |
0.452 |
|
| 2014 |
Ballester B, Medina-Rivera A, Schmidt D, Gonzàlez-Porta M, Carlucci M, Chen X, Chessman K, Faure AJ, Funnell AP, Goncalves A, Kutter C, Lukk M, Menon S, McLaren WM, Stefflova K, ... ... Weirauch MT, et al. Author response: Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways Elife. DOI: 10.7554/Elife.02626.031 |
0.377 |
|
| 2013 |
Sebé-Pedrós A, Ariza-Cosano A, Weirauch MT, Leininger S, Yang A, Torruella G, Adamski M, Adamska M, Hughes TR, Gómez-Skarmeta JL, Ruiz-Trillo I. Early evolution of the T-box transcription factor family. Proceedings of the National Academy of Sciences of the United States of America. 110: 16050-5. PMID 24043797 DOI: 10.1073/Pnas.1309748110 |
0.342 |
|
| 2013 |
Mann IK, Chatterjee R, Zhao J, He X, Weirauch MT, Hughes TR, Vinson C. CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo. Genome Research. 23: 988-97. PMID 23590861 DOI: 10.1101/Gr.146654.112 |
0.386 |
|
| 2013 |
Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S, Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, et al. Evaluation of methods for modeling transcription factor sequence specificity. Nature Biotechnology. 31: 126-34. PMID 23354101 DOI: 10.1038/Nbt.2486 |
0.31 |
|
| 2012 |
Ochs SM, Thumann S, Richau R, Weirauch MT, Lowe TM, Thomm M, Hausner W. Activation of archaeal transcription mediated by recruitment of transcription factor B. The Journal of Biological Chemistry. 287: 18863-71. PMID 22496454 DOI: 10.1074/jbc.M112.365742 |
0.324 |
|
| 2011 |
Weirauch MT, Hughes TR. A catalogue of eukaryotic transcription factor types, their evolutionary origin, and species distribution. Sub-Cellular Biochemistry. 52: 25-73. PMID 21557078 DOI: 10.1007/978-90-481-9069-0_3 |
0.325 |
|
| 2005 |
Elnitski L, Giardine B, Shah P, Zhang Y, Riemer C, Weirauch M, Burhans R, Miller W, Hardison RC. Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results. Nucleic Acids Research. 33: D466-70. PMID 15608239 DOI: 10.1093/Nar/Gki045 |
0.358 |
|
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