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Misook Ha, Ph.D. - Publications

Affiliations: 
2008 Cell and Molecular Biology University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
General Biology, Genetics
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Song Q, Huang TY, Yu HH, Ando A, Mas P, Ha M, Chen ZJ. Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis. Genome Biology. 20: 170. PMID 31429787 DOI: 10.1186/S13059-019-1777-1  0.312
2017 Ha M, Hong S. Gene-regulatory interactions in embryonic stem cells represent cell-type specific gene regulatory programs. Nucleic Acids Research. PMID 28977540 DOI: 10.1093/Nar/Gkx752  0.426
2016 Ha M, Hong S. DNA context represents transcription regulation of the gene in mouse embryonic stem cells. Scientific Reports. 6: 24343. PMID 27075878 DOI: 10.1038/Srep24343  0.393
2014 Ha M, Kraushaar DC, Zhao K. Genome-wide analysis of H3.3 dissociation reveals high nucleosome turnover at distal regulatory regions of embryonic stem cells. Epigenetics & Chromatin. 7: 38. PMID 25598842 DOI: 10.1186/1756-8935-7-38  0.398
2014 Tian L, Li X, Ha M, Zhang C, Chen ZJ. Genetic and epigenetic changes in a genomic region containing MIR172 in Arabidopsis allopolyploids and their progenitors. Heredity. 112: 207-14. PMID 24065179 DOI: 10.1038/Hdy.2013.94  0.595
2013 Kraushaar DC, Jin W, Maunakea A, Abraham B, Ha M, Zhao K. Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3. Genome Biology. 14: R121. PMID 24176123 DOI: 10.1186/Gb-2013-14-10-R121  0.355
2013 Ha M. Understanding the chromatin remodeling code. Plant Science : An International Journal of Experimental Plant Biology. 211: 137-45. PMID 23987819 DOI: 10.1016/J.Plantsci.2013.07.006  0.371
2013 Ha M, Hong S, Li WH. Predicting the probability of H3K4me3 occupation at a base pair from the genome sequence context. Bioinformatics (Oxford, England). 29: 1199-205. PMID 23511541 DOI: 10.1093/Bioinformatics/Btt126  0.406
2011 Ha M, Ng DW, Li WH, Chen ZJ. Coordinated histone modifications are associated with gene expression variation within and between species. Genome Research. 21: 590-8. PMID 21324879 DOI: 10.1101/Gr.116467.110  0.603
2009 Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ. Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.). Genome Biology. 10: R122. PMID 19889219 DOI: 10.1186/Gb-2009-10-11-R122  0.528
2009 Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Chapman EJ, Carrington JC, Chen X, Wang XJ, Chen ZJ. Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proceedings of the National Academy of Sciences of the United States of America. 106: 17835-40. PMID 19805056 DOI: 10.1073/Pnas.0907003106  0.601
2009 Ha MH, Choi J. Effects of environmental contaminants on hemoglobin gene expression in Daphnia magna: a potential biomarker for freshwater quality monitoring. Archives of Environmental Contamination and Toxicology. 57: 330-7. PMID 19471991 DOI: 10.1007/s00244-007-9079-0  0.32
2009 Ha M, Kim ED, Chen ZJ. Duplicate genes increase expression diversity in closely related species and allopolyploids. Proceedings of the National Academy of Sciences of the United States of America. 106: 2295-300. PMID 19168631 DOI: 10.1073/Pnas.0807350106  0.618
2009 Ni Z, Kim ED, Ha M, Lackey E, Liu J, Zhang Y, Sun Q, Chen ZJ. Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature. 457: 327-31. PMID 19029881 DOI: 10.1038/Nature07523  0.566
2008 Chen M, Ha M, Lackey E, Wang J, Chen ZJ. RNAi of met1 reduces DNA methylation and induces genome-specific changes in gene expression and centromeric small RNA accumulation in Arabidopsis allopolyploids. Genetics. 178: 1845-58. PMID 18430920 DOI: 10.1534/Genetics.107.086272  0.587
2008 Ha M, Pang M, Agarwal V, Chen ZJ. Interspecies regulation of microRNAs and their targets. Biochimica Et Biophysica Acta. 1779: 735-42. PMID 18407843 DOI: 10.1016/J.Bbagrm.2008.03.004  0.544
2008 Kim JF, Jeong H, Lee JS, Choi SH, Ha M, Hur CG, Kim JS, Lee S, Park HS, Park YH, Oh TK. Complete genome sequence of Leuconostoc citreum KM20. Journal of Bacteriology. 190: 3093-4. PMID 18281406 DOI: 10.1128/Jb.01862-07  0.359
2007 Chen ZJ, Ha M, Soltis D. Polyploidy: genome obesity and its consequences. The New Phytologist. 174: 717-20. PMID 17504455 DOI: 10.1111/J.1469-8137.2007.02084.X  0.57
2007 Ha M, Li WH, Chen ZJ. External factors accelerate expression divergence between duplicate genes. Trends in Genetics : Tig. 23: 162-6. PMID 17320239 DOI: 10.1016/J.Tig.2007.02.005  0.59
2006 Samuel Yang S, Cheung F, Lee JJ, Ha M, Wei NE, Sze SH, Stelly DM, Thaxton P, Triplett B, Town CD, Jeffrey Chen Z. Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton. The Plant Journal : For Cell and Molecular Biology. 47: 761-75. PMID 16889650 DOI: 10.1111/J.1365-313X.2006.02829.X  0.425
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