Jeffrey Lynn Bennetzen, PhD - Publications

Affiliations: 
Genetics University of Georgia, Athens, Athens, GA, United States 
Area:
genome structure and function, plant evolution
Website:
http://www.genetics.uga.edu/jlblab/

227 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Sudalaimuthuasari N, Ali R, Kottackal M, Rafi M, Al Nuaimi M, Kundu B, Al-Maskari RS, Wang X, Mishra AK, Balan J, Chaluvadi SR, Al Ansari F, Bennetzen JL, Purugganan MD, Hazzouri KM, et al. The Genome of the Mimosoid Legume , a Desert Tree. International Journal of Molecular Sciences. 23. PMID 35955640 DOI: 10.3390/ijms23158503  0.543
2022 Khan AL, Al-Harrasi A, Wang JP, Asaf S, Riethoven JM, Shehzad T, Liew CS, Song XM, Schachtman DP, Liu C, Yu JG, Zhang ZK, Meng FB, Yuan JQ, Wei CD, ... ... Bennetzen JL, et al. Genome structure and evolutionary history of frankincense producing . Iscience. 25: 104574. PMID 35789857 DOI: 10.1016/j.isci.2022.104574  0.52
2022 Varshney RK, Roorkiwal M, Sun S, Bajaj P, Chitikineni A, Thudi M, Singh NP, Du X, Upadhyaya HD, Khan AW, Wang Y, Garg V, Fan G, Cowling WA, Crossa J, ... ... Bennetzen JL, et al. Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature. PMID 35338354 DOI: 10.1038/s41586-022-04660-x  0.709
2021 Varshney RK, Roorkiwal M, Sun S, Bajaj P, Chitikineni A, Thudi M, Singh NP, Du X, Upadhyaya HD, Khan AW, Wang Y, Garg V, Fan G, Cowling WA, Crossa J, ... ... Bennetzen JL, et al. A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature. PMID 34759320 DOI: 10.1038/s41586-021-04066-1  0.767
2021 Chalopin D, Clark LG, Wysocki WP, Park M, Duvall MR, Bennetzen JL. Integrated Genomic Analyses From Low-Depth Sequencing Help Resolve Phylogenetic Incongruence in the Bamboos (Poaceae: Bambusoideae). Frontiers in Plant Science. 12: 725728. PMID 34567039 DOI: 10.3389/fpls.2021.725728  0.464
2021 Wang L, Zhu T, Rodriguez JC, Deal KR, Dubcovsky J, McGuire PE, Lux T, Spannagl M, Mayer KFX, Baldrich P, Meyers BC, Huo N, Gu YQ, Zhou H, Devos KM, ... Bennetzen JL, et al. Aegilops tauschii genome assembly Aet v5.0 features greater sequence contiguity and improved annotation. G3 (Bethesda, Md.). PMID 34515796 DOI: 10.1093/g3journal/jkab325  0.459
2021 Govindarajulu R, Hostetler AN, Xiao Y, Chaluvadi SR, Mauro-Herrera M, Siddoway ML, Whipple C, Bennetzen JL, Devos KM, Doust AN, Hawkins JS. Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum. G3 (Bethesda, Md.). 11. PMID 33712819 DOI: 10.1093/g3journal/jkab024  0.372
2021 Wang X, Chen S, Ma X, Yssel AEJ, Chaluvadi SR, Johnson MS, Gangashetty P, Hamidou F, Sanogo MD, Zwaenepoel A, Wallace J, de Peer Y, Bennetzen JL, Van Deynze A. Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis). Gigascience. 10. PMID 33710327 DOI: 10.1093/gigascience/giab013  0.368
2020 Dai X, Liu Y, Zhuang J, Yao S, Liu L, Jiang X, Zhou K, Wang Y, Xie D, Bennetzen JL, Gao L, Xia T. Discovery and characterization of tannase genes in plants: roles in hydrolysis of tannins. The New Phytologist. PMID 32061142 DOI: 10.1111/Nph.16425  0.357
2020 VanBuren R, Man Wai C, Wang X, Pardo J, Yocca AE, Wang H, Chaluvadi SR, Han G, Bryant D, Edger PP, Messing J, Sorrells ME, Mockler TC, Bennetzen JL, Michael TP. Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff. Nature Communications. 11: 884. PMID 32060277 DOI: 10.1038/S41467-020-14724-Z  0.752
2020 Varshney RK, Sinha P, Singh VK, Kumar A, Zhang Q, Bennetzen JL. 5Gs for crop genetic improvement. Current Opinion in Plant Biology. PMID 32005553 DOI: 10.1016/J.Pbi.2019.12.004  0.591
2020 Zhang S, Chaluvadi SR, Bennetzen JL. Genome Sequence Analysis of sp. C6, Found in the Pitcher Fluids of . Microbiology Resource Announcements. 9. PMID 31948957 DOI: 10.1128/MRA.01214-19  0.466
2020 Zhang S, Chaluvadi SR, Bennetzen JL. Draft Genome Sequence of a Serratia marcescens Strain Isolated from the Pitcher Fluids of a Pitcher Plant. Microbiology Resource Announcements. 9. PMID 31919167 DOI: 10.1128/MRA.01216-19  0.414
2020 Johnen L, de Souza TB, Rocha DM, Parteka LM, González-Elizondo MS, Trevisan R, Chaluvadi SR, Bennetzen JL, Vanzela ALL. Allopolyploidy and genomic differentiation in holocentric species of the Eleocharis montana complex (Cyperaceae) Plant Systematics and Evolution. 306. DOI: 10.1007/S00606-020-01666-8  0.381
2019 Chaluvadi SR, Young P, Thompson K, Bahri BA, Gajera B, Narayanan S, Krueger R, Bennetzen JL. phylogeny, and analysis of genetic variation in a diverse collection of date palm () and related species. Plant Diversity. 41: 330-339. PMID 31934678 DOI: 10.1016/J.Pld.2018.11.005  0.364
2019 Chen LY, VanBuren R, Paris M, Zhou H, Zhang X, Wai CM, Yan H, Chen S, Alonge M, Ramakrishnan S, Liao Z, Liu J, Lin J, Yue J, Fatima M, ... ... Bennetzen JL, et al. The bracteatus pineapple genome and domestication of clonally propagated crops. Nature Genetics. PMID 31570895 DOI: 10.1038/S41588-019-0506-8  0.534
2019 Li Y, Wang X, Ban Q, Zhu X, Jiang C, Wei C, Bennetzen JL. Comparative transcriptomic analysis reveals gene expression associated with cold adaptation in the tea plant Camellia sinensis. Bmc Genomics. 20: 624. PMID 31366321 DOI: 10.1186/S12864-019-5988-3  0.344
2019 Xia E, Li F, Tong W, Yang H, Wang S, Zhao J, Liu C, Gao L, Tai Y, She G, Sun J, Cao H, Gao Q, Li Y, Deng W, ... ... Bennetzen JL, et al. The tea plant reference genome and improved gene annotation using long-read and paired-end sequencing data. Scientific Data. 6: 122. PMID 31308375 DOI: 10.1038/S41597-019-0127-1  0.574
2019 Dunning LT, Olofsson JK, Parisod C, Choudhury RR, Moreno-Villena JJ, Yang Y, Dionora J, Quick WP, Park M, Bennetzen JL, Besnard G, Nosil P, Osborne CP, Christin PA. Lateral transfers of large DNA fragments spread functional genes among grasses. Proceedings of the National Academy of Sciences of the United States of America. PMID 30787193 DOI: 10.1073/Pnas.1810031116  0.573
2019 Xu CQ, Liu H, Zhou SS, Zhang DX, Zhao W, Wang S, Chen F, Sun YQ, Nie S, Jia KH, Jiao SQ, Zhang RG, Yun QZ, Guan W, Wang X, ... ... Bennetzen JL, et al. Genome sequence of Malania oleifera, a tree with great value for nervonic acid production. Gigascience. PMID 30689848 DOI: 10.1093/Gigascience/Giy164  0.365
2018 Chaluvadi S, Bennetzen JL. Species-Associated Differences in the Below-Ground Microbiomes of Wild and Domesticated . Frontiers in Plant Science. 9: 1183. PMID 30186294 DOI: 10.3389/Fpls.2018.01183  0.303
2018 Dai X, Wang H, Zhou H, Wang L, Dvořák J, Bennetzen JL, Müller HG. Birth and Death of LTR-Retrotransposons in . Genetics. PMID 30158124 DOI: 10.1534/Genetics.118.301198  0.492
2018 Tong W, Yu J, Hou Y, Li F, Zhou Q, Wei C, Bennetzen JL. Circular RNA architecture and differentiation during leaf bud to young leaf development in tea (Camellia sinensis). Planta. PMID 30128600 DOI: 10.1007/S00425-018-2983-X  0.376
2018 de Souza TB, Chaluvadi SR, Johnen L, Marques A, González-Elizondo MS, Bennetzen JL, Vanzela ALL. Analysis of retrotransposon abundance, diversity and distribution in holocentric Eleocharis (Cyperaceae) genomes. Annals of Botany. 122: 279-290. PMID 30084890 DOI: 10.1093/Aob/Mcy066  0.46
2018 Wang X, Yang S, Chen Y, Zhang S, Zhao Q, Li M, Gao Y, Yang L, Bennetzen JL. Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana. Bmc Genomics. 19: 500. PMID 29945549 DOI: 10.1186/S12864-018-4878-4  0.576
2018 Hoffberg SL, Troendle NJ, Glenn TC, Mahmud O, Louha S, Chalopin D, Bennetzen JL, Mauricio R. A High-Quality Reference Genome for the Invasive Mosquitofish Using a Chicago Library. G3 (Bethesda, Md.). PMID 29703783 DOI: 10.1534/G3.118.200101  0.766
2018 Wei C, Yang H, Wang S, Zhao J, Liu C, Gao L, Xia E, Lu Y, Tai Y, She G, Sun J, Cao H, Tong W, Gao Q, Li Y, ... ... Bennetzen JL, et al. Draft genome sequence of var. provides insights into the evolution of the tea genome and tea quality. Proceedings of the National Academy of Sciences of the United States of America. PMID 29678829 DOI: 10.1073/Pnas.1719622115  0.625
2018 Arthur RA, Bennetzen JL. Discovery of Lineage-Specific Genome Change in Rice Through Analysis of Resequencing Data. Genetics. PMID 29674519 DOI: 10.1534/Genetics.118.300848  0.559
2018 Bennetzen JL, Park M. Distinguishing friends, foes, and freeloaders in giant genomes. Current Opinion in Genetics & Development. 49: 49-55. PMID 29544119 DOI: 10.1016/J.Gde.2018.02.013  0.575
2018 Bennetzen JL, Wang X. Relationships Between Gene Structure and Genome Instability in Flowering Plants. Molecular Plant. PMID 29462722 DOI: 10.1016/J.Molp.2018.02.003  0.556
2018 Frailey DC, Chaluvadi SR, Vaughn JN, Coatney CG, Bennetzen JL. Gene loss and genome rearrangement in the plastids of five Hemiparasites in the family Orobanchaceae. Bmc Plant Biology. 18: 30. PMID 29409454 DOI: 10.1186/S12870-018-1249-X  0.548
2018 Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, ... ... Bennetzen JL, et al. Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments Nature Biotechnology. 36: 368-368. DOI: 10.1038/nbt0418-368d  0.452
2017 Nelson RS, Stewart CN, Gou J, Holladay S, Gallego-Giraldo L, Flanagan A, Mann DGJ, Hisano H, Wuddineh WA, Poovaiah CR, Srivastava A, Biswal AK, Shen H, Escamilla-Treviño LL, Yang J, ... ... Bennetzen JL, et al. Development and use of a switchgrass (Panicum virgatum L.) transformation pipeline by the BioEnergy Science Center to evaluate plants for reduced cell wall recalcitrance. Biotechnology For Biofuels. 10: 309. PMID 29299059 DOI: 10.1186/S13068-017-0991-X  0.301
2017 Wuyun TN, Wang L, Liu H, Wang X, Zhang L, Bennetzen JL, Li T, Yang L, Liu P, Du L, Wang L, Huang M, Qing J, Zhu L, Bao W, et al. The hardy rubber tree genome provides insights into the evolution of polyisoprene biosynthesis. Molecular Plant. PMID 29229569 DOI: 10.1016/J.Molp.2017.11.014  0.592
2017 Luo MC, Gu YQ, Puiu D, Wang H, Twardziok SO, Deal KR, Huo N, Zhu T, Wang L, Wang Y, McGuire PE, Liu S, Long H, Ramasamy RK, Rodriguez JC, ... ... Bennetzen JL, et al. Genome sequence of the progenitor of the wheat D genome Aegilops tauschii. Nature. PMID 29143815 DOI: 10.1038/Nature24486  0.782
2017 Kim S, Park J, Yeom SI, Kim YM, Seo E, Kim KT, Kim MS, Lee JM, Cheong K, Shin HS, Kim SB, Han K, Lee J, Park M, Lee HA, ... ... Bennetzen JL, et al. New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication. Genome Biology. 18: 210. PMID 29089032 DOI: 10.1186/S13059-017-1341-9  0.542
2017 Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, ... ... Bennetzen JL, et al. Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. PMID 28922347 DOI: 10.1038/Nbt.3943  0.827
2016 Zhang W, Xu J, Bennetzen JL, Messing J. Teff, an orphan cereal in the Chloridoideae, provides insights into the evolution of storage proteins in grasses. Genome Biology and Evolution. PMID 27190000 DOI: 10.1093/Gbe/Evw117  0.391
2015 Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, ... ... Bennetzen JL, et al. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47: 1435-42. PMID 26523774 DOI: 10.1038/Ng.3435  0.836
2015 Brutnell TP, Bennetzen JL, Vogel JP. Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses. Annual Review of Plant Biology. 66: 465-85. PMID 25621515 DOI: 10.1146/Annurev-Arplant-042811-105528  0.369
2015 Wang X, Bennetzen JL. Current status and prospects for the study of Nicotiana genomics, genetics, and nicotine biosynthesis genes. Molecular Genetics and Genomics : Mgg. 290: 11-21. PMID 25582664 DOI: 10.1007/S00438-015-0989-7  0.53
2015 Urano D, Dong T, Bennetzen JL, Jones AM. Adaptive evolution of signaling partners. Molecular Biology and Evolution. 32: 998-1007. PMID 25568345 DOI: 10.1093/Molbev/Msu404  0.314
2014 Wang H, Devos KM, Bennetzen JL. Recurrent loss of specific introns during angiosperm evolution. Plos Genetics. 10: e1004843. PMID 25474210 DOI: 10.1371/Journal.Pgen.1004843  0.391
2014 Zhang QJ, Zhu T, Xia EH, Shi C, Liu YL, Zhang Y, Liu Y, Jiang WK, Zhao YJ, Mao SY, Zhang LP, Huang H, Jiao JY, Xu PZ, Yao QY, ... ... Bennetzen JL, et al. Rapid diversification of five Oryza AA genomes associated with rice adaptation. Proceedings of the National Academy of Sciences of the United States of America. 111: E4954-62. PMID 25368197 DOI: 10.1073/Pnas.1418307111  0.629
2014 Vaughn JN, Chaluvadi SR, Tushar, Rangan L, Bennetzen JL. Whole plastome sequences from five ginger species facilitate marker development and define limits to barcode methodology. Plos One. 9: e108581. PMID 25333869 DOI: 10.1371/Journal.Pone.0108581  0.456
2014 Hawkins JS, Delgado V, Feng L, Carlise M, Dooner HK, Bennetzen JL. Variation in allelic expression associated with a recombination hotspot in Zea mays. The Plant Journal : For Cell and Molecular Biology. 79: 375-84. PMID 24761964 DOI: 10.1111/Tpj.12537  0.405
2014 Vaughn JN, Bennetzen JL. Natural insertions in rice commonly form tandem duplications indicative of patch-mediated double-strand break induction and repair. Proceedings of the National Academy of Sciences of the United States of America. 111: 6684-9. PMID 24760826 DOI: 10.1073/Pnas.1321854111  0.513
2014 Bennetzen JL, Wang H. The contributions of transposable elements to the structure, function, and evolution of plant genomes. Annual Review of Plant Biology. 65: 505-30. PMID 24579996 DOI: 10.1146/Annurev-Arplant-050213-035811  0.577
2014 Chaluvadi SR, Khanam S, Aly MAM, Bennetzen JL. Genetic Diversity and Population Structure of Native and Introduced Date Palm (Phoenix dactylifera) Germplasm in the United Arab Emirates Tropical Plant Biology. 7: 30-41. DOI: 10.1007/S12042-014-9135-7  0.312
2013 Cha M, Wang H, Chung D, Bennetzen JL, Westpheling J. Isolation and bioinformatic analysis of a novel transposable element, ISCbe4, from the hyperthermophilic bacterium, Caldicellulosiruptor bescii. Journal of Industrial Microbiology & Biotechnology. 40: 1443-8. PMID 24081709 DOI: 10.1007/S10295-013-1345-8  0.462
2013 Wang C, Shi X, Liu L, Li H, Ammiraju JS, Kudrna DA, Xiong W, Wang H, Dai Z, Zheng Y, Lai J, Jin W, Messing J, Bennetzen JL, Wing RA, et al. Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives. Genetics. 195: 723-37. PMID 24037269 DOI: 10.1534/Genetics.113.157115  0.62
2013 Vitte C, Estep MC, Leebens-Mack J, Bennetzen JL. Young, intact and nested retrotransposons are abundant in the onion and asparagus genomes. Annals of Botany. 112: 881-9. PMID 23887091 DOI: 10.1093/Aob/Mct155  0.85
2013 Zhu Q, Bennetzen JL, Smith SM. Isolation and diversity analysis of resistance gene homologues from switchgrass. G3 (Bethesda, Md.). 3: 1031-42. PMID 23589518 DOI: 10.1534/G3.112.005447  0.383
2013 Parvathaneni RK, Jakkula V, Padi FK, Faure S, Nagarajappa N, Pontaroli AC, Wu X, Bennetzen JL, Devos KM. Fine-mapping and identification of a candidate gene underlying the d2 dwarfing phenotype in pearl millet, Cenchrus americanus (L.) Morrone. G3 (Bethesda, Md.). 3: 563-72. PMID 23450459 DOI: 10.1534/G3.113.005587  0.407
2013 Aksoy S, Almeida-Val VM, Azevedo VC, Baucom R, Bazaga P, Beheregaray LB, Bennetzen JL, Brassaloti RA, Burgess TI, Caccone A, Chang SM, Ciampi AY, Ciancaleoni S, Clímaco GT, et al. Permanent genetic resources added to molecular ecology resources database 1 October 2012-30 November 2012. Molecular Ecology Resources. 13: 341-3. PMID 23356940 DOI: 10.1111/1755-0998.12061  0.769
2013 Estep MC, DeBarry JD, Bennetzen JL. The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution. Heredity. 110: 194-204. PMID 23321774 DOI: 10.1038/Hdy.2012.99  0.811
2013 Wu J, Wang Z, Shi Z, Zhang S, Ming R, Zhu S, Khan MA, Tao S, Korban SS, Wang H, Chen NJ, Nishio T, Xu X, Cong L, Qi K, ... ... Bennetzen JL, et al. The genome of the pear (Pyrus bretschneideri Rehd.). Genome Research. 23: 396-408. PMID 23149293 DOI: 10.1101/Gr.144311.112  0.648
2013 Fedoroff NV, Bennetzen JL. Transposons, Genomic Shock, and Genome Evolution Plant Transposons and Genome Dynamics in Evolution. 181-201. DOI: 10.1002/9781118500156.ch10  0.435
2012 Wang H, Bennetzen JL. Centromere retention and loss during the descent of maize from a tetraploid ancestor. Proceedings of the National Academy of Sciences of the United States of America. 109: 21004-9. PMID 23197827 DOI: 10.1073/Pnas.1218668109  0.475
2012 Zhu Q, Smith SM, Ayele M, Yang L, Jogi A, Chaluvadi SR, Bennetzen JL. High-throughput discovery of mutations in tef semi-dwarfing genes by next-generation sequencing analysis. Genetics. 192: 819-29. PMID 22904035 DOI: 10.1534/Genetics.112.144436  0.427
2012 Urano D, Jones JC, Wang H, Matthews M, Bradford W, Bennetzen JL, Jones AM. G protein activation without a GEF in the plant kingdom. Plos Genetics. 8: e1002756. PMID 22761582 DOI: 10.1371/Journal.Pgen.1002756  0.35
2012 Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Deshpande S, et al. Reference genome sequence of the model plant Setaria. Nature Biotechnology. 30: 555-61. PMID 22580951 DOI: 10.1038/Nbt.2196  0.865
2012 Smith SM, Yuan Y, Doust AN, Bennetzen JL. Haplotype Analysis and Linkage Disequilibrium at Five Loci in Eragrostis tef. G3 (Bethesda, Md.). 2: 407-19. PMID 22413094 DOI: 10.1534/G3.111.001511  0.609
2012 Xu JH, Bennetzen JL, Messing J. Dynamic gene copy number variation in collinear regions of grass genomes. Molecular Biology and Evolution. 29: 861-71. PMID 22002476 DOI: 10.1093/Molbev/Msr261  0.588
2012 Estep MC, Gowda BS, Huang K, Timko MP, Bennetzen JL. Genomic characterization for parasitic weeds of the genus striga by sample sequence analysis Plant Genome. 5: 30-41. DOI: 10.3835/Plantgenome2011.11.0031  0.832
2011 Mann DG, King ZR, Liu W, Joyce BL, Percifield RJ, Hawkins JS, LaFayette PR, Artelt BJ, Burris JN, Mazarei M, Bennetzen JL, Parrott WA, Stewart CN. Switchgrass (Panicum virgatum L.) polyubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation. Bmc Biotechnology. 11: 74. PMID 21745390 DOI: 10.1186/1472-6750-11-74  0.396
2011 Al-Dous EK, George B, Al-Mahmoud ME, Al-Jaber MY, Wang H, Salameh YM, Al-Azwani EK, Chaluvadi S, Pontaroli AC, DeBarry J, Arondel V, Ohlrogge J, Saie IJ, Suliman-Elmeer KM, Bennetzen JL, et al. De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera). Nature Biotechnology. 29: 521-7. PMID 21623354 DOI: 10.1038/Nbt.1860  0.594
2011 Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science (New York, N.Y.). 332: 960-3. PMID 21551031 DOI: 10.1126/Science.1203810  0.733
2011 Lisch D, Bennetzen JL. Transposable element origins of epigenetic gene regulation. Current Opinion in Plant Biology. 14: 156-61. PMID 21444239 DOI: 10.1016/J.Pbi.2011.01.003  0.721
2011 Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, ... ... Bennetzen JL, et al. The genome of woodland strawberry (Fragaria vesca). Nature Genetics. 43: 109-16. PMID 21186353 DOI: 10.1038/Ng.740  0.627
2011 Galbraith DW, Bennetzen JL, Kellogg EA, Pires JC, Soltis PS. The Genomes of All Angiosperms: A Call for a Coordinated Global Census Journal of Botany. 2011: 1-10. DOI: 10.1155/2011/646198  0.455
2011 Estep MC, van Mourik TA, Muth P, Guindo D, Parzies HK, Koita OA, Weltzien E, Bennetzen JL. Genetic Diversity of a Parasitic Weed, Striga hermonthica, on Sorghum and Pearl Millet in Mali Tropical Plant Biology. 4: 91-98. DOI: 10.1007/S12042-011-9073-6  0.758
2010 Andree K, Axtner J, Bagley MJ, Barlow EJ, Beebee TJ, Bennetzen JL, Bermingham E, Boisselier-Dubayle MC, Bozarth CA, Brooks CP, Brown RP, Catanese G, Cavers S, Ceron-Souza I, et al. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2010 - 31 May 2010. Molecular Ecology Resources. 10: 1098-105. PMID 21565124 DOI: 10.1111/J.1755-0998.2010.02898.X  0.754
2010 Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, et al. Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 430-42. PMID 20487382 DOI: 10.1111/J.1365-313X.2010.04251.X  0.531
2010 Gleick PH, Adams RM, Amasino RM, Anders E, Anderson DJ, Anderson WW, Anselin LE, Arroyo MK, Asfaw B, Ayala FJ, Bax A, Bebbington AJ, Bell G, Bennett MV, Bennetzen JL, et al. Climate change and the integrity of science. Science (New York, N.Y.). 328: 689-90. PMID 20448167 DOI: 10.1126/Science.328.5979.689  0.529
2010 Davis TM, Shields ME, Zhang Q, Tombolato-Terzić D, Bennetzen JL, Pontaroli AC, Wang H, Yao Q, SanMiguel P, Folta KM. An examination of targeted gene neighborhoods in strawberry. Bmc Plant Biology. 10: 81. PMID 20441596 DOI: 10.1186/1471-2229-10-81  0.626
2009 Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Bennetzen JL, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534  0.854
2009 Baucom RS, Estill JC, Chaparro C, Upshaw N, Jogi A, Deragon JM, Westerman RP, Sanmiguel PJ, Bennetzen JL. Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome. Plos Genetics. 5: e1000732. PMID 19936065 DOI: 10.1371/Journal.Pgen.1000732  0.85
2009 Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, ... ... Bennetzen JL, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/Journal.Pgen.1000728  0.868
2009 Yang L, Bennetzen JL. Distribution, diversity, evolution, and survival of Helitrons in the maize genome. Proceedings of the National Academy of Sciences of the United States of America. 106: 19922-7. PMID 19926865 DOI: 10.1073/Pnas.0908008106  0.546
2009 Tian Z, Rizzon C, Du J, Zhu L, Bennetzen JL, Jackson SA, Gaut BS, Ma J. Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons? Genome Research. 19: 2221-30. PMID 19789376 DOI: 10.1101/Gr.083899.108  0.83
2009 Yang L, Bennetzen JL. Structure-based discovery and description of plant and animal Helitrons. Proceedings of the National Academy of Sciences of the United States of America. 106: 12832-7. PMID 19622734 DOI: 10.1073/Pnas.0905563106  0.531
2009 Estill JC, Bennetzen JL. The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes. Plant Methods. 5: 8. PMID 19545381 DOI: 10.1186/1746-4811-5-8  0.784
2009 Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell A, Leroy P, Morgante M, Panaud O, Paux E, SanMiguel P, Schulman AH. A unified classification system for eukaryotic transposable elements should reflect their phylogeny. Nature Reviews Genetics. 10: 276-276. PMID 19238178 DOI: 10.1038/Nrg2165-C3  0.525
2009 Lu F, Ammiraju JS, Sanyal A, Zhang S, Song R, Chen J, Li G, Sui Y, Song X, Cheng Z, de Oliveira AC, Bennetzen JL, Jackson SA, Wing RA, Chen M. Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proceedings of the National Academy of Sciences of the United States of America. 106: 2071-6. PMID 19164767 DOI: 10.1073/Pnas.0812798106  0.814
2009 Doust AN, Kellogg EA, Devos KM, Bennetzen JL. Foxtail millet: a sequence-driven grass model system. Plant Physiology. 149: 137-41. PMID 19126705 DOI: 10.1104/Pp.108.129627  0.536
2009 Baucom RS, Estill JC, Leebens-Mack J, Bennetzen JL. Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome. Genome Research. 19: 243-54. PMID 19029538 DOI: 10.1101/Gr.083360.108  0.855
2009 Pontaroli AC, Rogers RL, Zhang Q, Shields ME, Davis TM, Folta KM, SanMiguel P, Bennetzen JL. Gene Content and Distribution in the Nuclear Genome of Fragaria vesca The Plant Genome. 2: 93-101. DOI: 10.3835/Plantgenome2008.09.0007  0.73
2009 Bennetzen JL. Maize genome structure and evolution Handbook of Maize: Genetics and Genomics. 179-199. DOI: 10.1007/978-0-387-77863-1_9  0.416
2009 Bennetzen JL. Maize genome structure and evolution Handbook of Maize: Genetics and Genomics. 179-199. DOI: 10.1007/978-0-387-77863-1_9  0.416
2009 Bennetzen JL, Hake S. Handbook of maize: Genetics and genomics Handbook of Maize: Genetics and Genomics. 1-798. DOI: 10.1007/978-0-387-77863-1  0.678
2009 Bennetzen JL, Hake S. Handbook of maize: Genetics and genomics Handbook of Maize: Genetics and Genomics. 1-798. DOI: 10.1007/978-0-387-77863-1  0.419
2009 Davis TM, Shields ME, Zhang Q, Poulsen EG, Folta KM, Bennetzen JL, Miguel PS. The strawberry genome is coming into view Acta Horticulturae. 842: 533-536.  0.421
2009 Davis TM, Shields ME, Zhang Q, Poulsen EG, Folta KM, Bennetzen JL, Miguel PS. The strawberry genome is coming into view Acta Horticulturae. 842: 533-536.  0.421
2008 Nelson W, Luo M, Ma J, Estep M, Estill J, He R, Talag J, Sisneros N, Kudrna D, Kim H, Ammiraju JS, Collura K, Bharti AK, Messing J, Wing RA, ... ... Bennetzen JL, et al. Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains. Bmc Genomics. 9: 621. PMID 19099592 DOI: 10.1186/1471-2164-9-621  0.839
2008 Ammiraju JS, Lu F, Sanyal A, Yu Y, Song X, Jiang N, Pontaroli AC, Rambo T, Currie J, Collura K, Talag J, Fan C, Goicoechea JL, Zuccolo A, Chen J, ... Bennetzen JL, et al. Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. The Plant Cell. 20: 3191-209. PMID 19098269 DOI: 10.1105/Tpc.108.063727  0.637
2008 Liu R, Bennetzen JL. Enchilada redux: how complete is your genome sequence? The New Phytologist. 179: 249-50. PMID 19086172 DOI: 10.1111/J.1469-8137.2008.02527.X  0.557
2008 Messing J, Bennetzen JL. Grass genome structure and evolution. Genome Dynamics. 4: 41-56. PMID 18756076 DOI: 10.1159/000126005  0.5
2008 Nagy ED, Bennetzen JL. Pathogen corruption and site-directed recombination at a plant disease resistance gene cluster. Genome Research. 18: 1918-23. PMID 18719093 DOI: 10.1101/Gr.078766.108  0.404
2008 Conner JA, Goel S, Gunawan G, Cordonnier-Pratt MM, Johnson VE, Liang C, Wang H, Pratt LH, Mullet JE, DeBarry J, Yang L, Bennetzen JL, Klein PE, Ozias-Akins P. Sequence analysis of bacterial artificial chromosome clones from the apospory-specific genomic region of Pennisetum and Cenchrus. Plant Physiology. 147: 1396-411. PMID 18508959 DOI: 10.1104/Pp.108.119081  0.616
2008 DeBarry JD, Liu R, Bennetzen JL. Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm. Bmc Bioinformatics. 9: 235. PMID 18474116 DOI: 10.1186/1471-2105-9-235  0.582
2008 Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, ... ... Bennetzen JL, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (New York, N.Y.). 319: 64-9. PMID 18079367 DOI: 10.1126/Science.1150646  0.567
2008 Bennetzen JL, Chen M. Grass genomic synteny illuminates plant genome function and evolution Rice. 1: 109-118. DOI: 10.1007/S12284-008-9015-6  0.61
2008 Bennetzen JL, Chen M. Grass genomic synteny illuminates plant genome function and evolution Rice. 1: 109-118. DOI: 10.1007/s12284-008-9015-6  0.441
2008 Dida MM, Wanyera N, Harrison Dunn ML, Bennetzen JL, Devos KM. Population Structure and Diversity in Finger Millet (Eleusine coracana) Germplasm Tropical Plant Biology. 1: 131-141. DOI: 10.1007/S12042-008-9012-3  0.404
2007 Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell A, Leroy P, Morgante M, Panaud O, Paux E, SanMiguel P, Schulman AH. A unified classification system for eukaryotic transposable elements. Nature Reviews. Genetics. 8: 973-82. PMID 17984973 DOI: 10.1038/Nrg2165  0.523
2007 Ma J, Wing RA, Bennetzen JL, Jackson SA. Evolutionary history and positional shift of a rice centromere. Genetics. 177: 1217-20. PMID 17660534 DOI: 10.1534/Genetics.107.078709  0.726
2007 Liu R, Vitte C, Ma J, Mahama AA, Dhliwayo T, Lee M, Bennetzen JL. A GeneTrek analysis of the maize genome. Proceedings of the National Academy of Sciences of the United States of America. 104: 11844-9. PMID 17615239 DOI: 10.1073/Pnas.0704258104  0.791
2007 Corby-Harris V, Pontaroli AC, Shimkets LJ, Bennetzen JL, Habel KE, Promislow DE. Geographical distribution and diversity of bacteria associated with natural populations of Drosophila melanogaster. Applied and Environmental Microbiology. 73: 3470-9. PMID 17400769 DOI: 10.1128/Aem.02120-06  0.316
2007 Nagy ED, Lee TC, Ramakrishna W, Xu Z, Klein PE, SanMiguel P, Cheng CP, Li J, Devos KM, Schertz K, Dunkle L, Bennetzen JL. Fine mapping of the Pc locus of Sorghum bicolor, a gene controlling the reaction to a fungal pathogen and its host-selective toxin. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 114: 961-70. PMID 17356869 DOI: 10.1007/S00122-006-0481-1  0.422
2007 Bennetzen JL. Patterns in grass genome evolution. Current Opinion in Plant Biology. 10: 176-81. PMID 17291821 DOI: 10.1016/J.Pbi.2007.01.010  0.574
2007 Ma J, Wing RA, Bennetzen JL, Jackson SA. Plant centromere organization: a dynamic structure with conserved functions. Trends in Genetics : Tig. 23: 134-9. PMID 17275131 DOI: 10.1016/J.Tig.2007.01.004  0.739
2007 Gorantla M, Babu PR, Lachagari VB, Reddy AM, Wusirika R, Bennetzen JL, Reddy AR. Identification of stress-responsive genes in an indica rice (Oryza sativa L.) using ESTs generated from drought-stressed seedlings. Journal of Experimental Botany. 58: 253-65. PMID 17132712 DOI: 10.1093/Jxb/Erl213  0.429
2007 Dida MM, Srinivasachary, Ramakrishnan S, Bennetzen JL, Gale MD, Devos KM. The genetic map of finger millet, Eleusine coracana. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 114: 321-32. PMID 17103137 DOI: 10.1007/S00122-006-0435-7  0.507
2006 Vitte C, Bennetzen JL. Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution. Proceedings of the National Academy of Sciences of the United States of America. 103: 17638-43. PMID 17101966 DOI: 10.1073/Pnas.0605618103  0.589
2006 Bruggmann R, Bharti AK, Gundlach H, Lai J, Young S, Pontaroli AC, Wei F, Haberer G, Fuks G, Du C, Raymond C, Estep MC, Liu R, Bennetzen JL, Chan AP, et al. Uneven chromosome contraction and expansion in the maize genome. Genome Research. 16: 1241-51. PMID 16902087 DOI: 10.1101/Gr.5338906  0.845
2006 Rabinowicz PD, Bennetzen JL. The maize genome as a model for efficient sequence analysis of large plant genomes. Current Opinion in Plant Biology. 9: 149-56. PMID 16459129 DOI: 10.1016/J.Pbi.2006.01.015  0.619
2006 Chan AP, Pertea G, Cheung F, Lee D, Zheng L, Whitelaw C, Pontaroli AC, SanMiguel P, Yuan Y, Bennetzen J, Barbazuk WB, Quackenbush J, Rabinowicz PD. The TIGR Maize Database Nucleic Acids Research.. 34: D771-776. PMID 16381977 DOI: 10.1093/Nar/Gkj072  0.61
2006 Ma J, Bennetzen JL. Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice. Proceedings of the National Academy of Sciences of the United States of America. 103: 383-8. PMID 16381819 DOI: 10.1073/Pnas.0509810102  0.739
2006 Chu Z, Fu B, Yang H, Xu C, Li Z, Sanchez A, Park YJ, Bennetzen JL, Zhang Q, Wang S. Targeting xa13, a recessive gene for bacterial blight resistance in rice. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 112: 455-61. PMID 16328230 DOI: 10.1007/S00122-005-0145-6  0.458
2005 Devos KM, Ma J, Pontaroli AC, Pratt LH, Bennetzen JL. Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat. Proceedings of the National Academy of Sciences of the United States of America. 102: 19243-8. PMID 16357197 DOI: 10.1073/Pnas.0509473102  0.787
2005 Bennetzen JL. Transposable elements, gene creation and genome rearrangement in flowering plants. Current Opinion in Genetics & Development. 15: 621-7. PMID 16219458 DOI: 10.1016/J.Gde.2005.09.010  0.532
2005 Emberton J, Ma J, Yuan Y, SanMiguel P, Bennetzen JL. Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries. Genome Research. 15: 1441-6. PMID 16204197 DOI: 10.1101/Gr.3362105  0.771
2005 Ma J, SanMiguel P, Lai J, Messing J, Bennetzen JL. DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes. Genetics. 170: 1209-20. PMID 15834137 DOI: 10.1534/Genetics.105.040915  0.776
2005 Bennetzen JL, Ma J, Devos KM. Mechanisms of recent genome size variation in flowering plants. Annals of Botany. 95: 127-32. PMID 15596462 DOI: 10.1093/Aob/Mci008  0.783
2005 Swigonová Z, Bennetzen JL, Messing J. Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum. Genetics. 169: 891-906. PMID 15489523 DOI: 10.1534/Genetics.104.034629  0.519
2005 Bennetzen JL, Liu R, Ma J, Pontaroli A. Maize genome structure and rearrangement Maydica. 50: 387-392.  0.412
2005 Bennetzen JL, Liu R, Ma J, Pontaroli A. Maize genome structure and rearrangement Maydica. 50: 387-392.  0.412
2004 Kellogg EA, Bennetzen JL. The evolution of nuclear genome structure in seed plants. American Journal of Botany. 91: 1709-25. PMID 21652319 DOI: 10.3732/Ajb.91.10.1709  0.607
2004 Swigonova Z, Lai J, Ma J, Ramakrishna W, Llaca V, Bennetzen JL, Messing J. On the tetraploid origin of the maize genome. Comparative and Functional Genomics. 5: 281-4. PMID 18629160 DOI: 10.1002/Cfg.395  0.81
2004 Gill BS, Appels R, Botha-Oberholster AM, Buell CR, Bennetzen JL, Chalhoub B, Chumley F, Dvorák J, Iwanaga M, Keller B, Li W, McCombie WR, Ogihara Y, Quetier F, Sasaki T. A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium. Genetics. 168: 1087-96. PMID 15514080 DOI: 10.1534/Genetics.104.034769  0.554
2004 Bennetzen JL, Coleman C, Liu R, Ma J, Ramakrishna W. Consistent over-estimation of gene number in complex plant genomes. Current Opinion in Plant Biology. 7: 732-6. PMID 15491923 DOI: 10.1016/J.Pbi.2004.09.003  0.779
2004 Lai J, Ma J, Swigonová Z, Ramakrishna W, Linton E, Llaca V, Tanyolac B, Park YJ, Jeong OY, Bennetzen JL, Messing J. Gene loss and movement in the maize genome. Genome Research. 14: 1924-31. PMID 15466290 DOI: 10.1101/Gr.2701104  0.765
2004 Swigonová Z, Lai J, Ma J, Ramakrishna W, Llaca V, Bennetzen JL, Messing J. Close split of sorghum and maize genome progenitors. Genome Research. 14: 1916-23. PMID 15466289 DOI: 10.1101/Gr.2332504  0.814
2004 Ma J, Bennetzen JL. Rapid recent growth and divergence of rice nuclear genomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 12404-10. PMID 15240870 DOI: 10.1073/Pnas.0403715101  0.818
2004 Park YJ, Dixit A, Yoo JW, Bennetzen J. Further evidence of microcolinearity between barley and rice genomes at two orthologous regions Molecules and Cells. 17: 492-502. PMID 15232225  0.535
2004 Ma J, Devos KM, Bennetzen JL. Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Research. 14: 860-9. PMID 15078861 DOI: 10.1101/Gr.1466204  0.78
2004 Yan L, Loukoianov A, Blechl A, Tranquilli G, Ramakrishna W, SanMiguel P, Bennetzen JL, Echenique V, Dubcovsky J. The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science (New York, N.Y.). 303: 1640-4. PMID 15016992 DOI: 10.1126/Science.1094305  0.361
2004 Muthukumar B, Bennetzen JL. Isolation and characterization of genomic and transcribed retrotransposon sequences from sorghum. Molecular Genetics and Genomics : Mgg. 271: 308-16. PMID 14760522 DOI: 10.1007/S00438-004-0980-1  0.515
2003 Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, SanMiguel P, Lakey N, Bedell J, Yuan Y, Budiman MA, et al. Enrichment of gene-coding sequences in maize by genome filtration. Science (New York, N.Y.). 302: 2118-20. PMID 14684821 DOI: 10.1126/Science.1090047  0.6
2003 Sanz-Alferez S, SanMiguel P, Jin YK, Springer PS, Bennetzen JL. Structure and evolution of the Cinful retrotransposon family of maize. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 46: 745-52. PMID 14608391 DOI: 10.1139/G03-061  0.549
2003 Ilic K, SanMiguel PJ, Bennetzen JL. A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes. Proceedings of the National Academy of Sciences of the United States of America. 100: 12265-70. PMID 14530400 DOI: 10.1073/Pnas.1434476100  0.622
2003 Ramakrishna W, Bennetzen JL. Genomic colinearity as a tool for plant gene isolation. Methods in Molecular Biology (Clifton, N.J.). 236: 109-22. PMID 14501061 DOI: 10.1385/1-59259-413-1:109  0.622
2003 Yuan Y, SanMiguel PJ, Bennetzen JL. High-Cot sequence analysis of the maize genome. The Plant Journal : For Cell and Molecular Biology. 34: 249-55. PMID 12694599 DOI: 10.1046/J.1365-313X.2003.01716.X  0.579
2003 Bennetzen JL, Ma J. The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis. Current Opinion in Plant Biology. 6: 128-33. PMID 12667868 DOI: 10.1016/S1369-5266(03)00015-3  0.821
2002 Ramakrishna W, Ma J, Sanmiguel P, Emberton J, Dubcovsky J, Shiloff BA, Jiang Z, Rostoks N, Busso CS, Ogden M, Linton E, Kleinhofs A, Devos KM, Messing J, Bennetzen JL. Frequent genic rearrangements in two regions of grass genomes identified by comparative sequence analysis. Comparative and Functional Genomics. 3: 165-6. PMID 18628890 DOI: 10.1002/Cfg.164  0.805
2002 Ramakrishna W, Emberton J, SanMiguel P, Ogden M, Llaca V, Messing J, Bennetzen JL. Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex. Plant Physiology. 130: 1728-38. PMID 12481055 DOI: 10.1104/Pp.014951  0.49
2002 Yan L, Echenique V, Busso C, SanMiguel P, Ramakrishna W, Bennetzen JL, Harrington S, Dubcovsky J. Cereal genes similar to Snf2 define a new subfamily that includes human and mouse genes. Molecular Genetics and Genomics : Mgg. 268: 488-99. PMID 12471446 DOI: 10.1007/S00438-002-0765-3  0.516
2002 Ramakrishna W, Emberton J, Ogden M, SanMiguel P, Bennetzen JL. Structural analysis of the maize rp1 complex reveals numerous sites and unexpected mechanisms of local rearrangement. The Plant Cell. 14: 3213-23. PMID 12468738 DOI: 10.1105/Tpc.006338  0.544
2002 Ramakrishna W, Dubcovsky J, Park YJ, Busso C, Emberton J, SanMiguel P, Bennetzen JL. Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes. Genetics. 162: 1389-400. PMID 12454082  0.465
2002 Stam M, Belele C, Ramakrishna W, Dorweiler JE, Bennetzen JL, Chandler VL. The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences. Genetics. 162: 917-30. PMID 12399399  0.667
2002 Yuan Y, SanMiguel PJ, Bennetzen JL. Methylation-spanning linker libraries link gene-rich regions and identify epigenetic boundaries in Zea mays. Genome Research. 12: 1345-9. PMID 12213771 DOI: 10.1101/Gr.185902  0.534
2002 Bennetzen JL. Mechanisms and rates of genome expansion and contraction in flowering plants. Genetica. 115: 29-36. PMID 12188046 DOI: 10.1023/A:1016015913350  0.55
2002 Devos KM, Brown JK, Bennetzen JL. Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Research. 12: 1075-9. PMID 12097344 DOI: 10.1101/Gr.132102  0.554
2002 Bennetzen JL, Ramakrishna W. Exceptional haplotype variation in maize. Proceedings of the National Academy of Sciences of the United States of America. 99: 9093-5. PMID 12093929 DOI: 10.1073/Pnas.152336699  0.592
2002 SanMiguel PJ, Ramakrishna W, Bennetzen JL, Busso CS, Dubcovsky J. Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A(m). Functional & Integrative Genomics. 2: 70-80. PMID 12021852 DOI: 10.1007/S10142-002-0056-4  0.576
2002 Rostoks N, Park YJ, Ramakrishna W, Ma J, Druka A, Shiloff BA, SanMiguel PJ, Jiang Z, Brueggeman R, Sandhu D, Gill K, Bennetzen JL, Kleinhofs A. Genomic sequencing reveals gene content, genomic organization, and recombination relationships in barley. Functional & Integrative Genomics. 2: 51-9. PMID 12021850 DOI: 10.1007/S10142-002-0055-5  0.806
2002 Bennetzen JL, Ramakrishna W. Numerous small rearrangements of gene content, order and orientation differentiate grass genomes. Plant Molecular Biology. 48: 821-7. PMID 11999852 DOI: 10.1023/A:1014841515249  0.599
2002 Bennetzen J. The rice genome. Opening the door to comparative plant biology. Science (New York, N.Y.). 296: 60-3. PMID 11935009 DOI: 10.1126/Science.1071402  0.462
2002 Reddy AR, Ramakrishna W, Sekhar AC, Ithal N, Babu PR, Bonaldo MF, Soares MB, Bennetzen JL. Novel genes are enriched in normalized cDNA libraries from drought-stressed seedlings of rice (Oryza sativa L. subsp. indica cv. Nagina 22). Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 45: 204-11. PMID 11908663 DOI: 10.1139/G01-114  0.42
2002 Ghebru B, Schmidt RJ, Bennetzen JL. Genetic diversity of Eritrean sorghum landraces assessed with simple sequence repeat (SSR) markers Theoretical and Applied Genetics. 105: 229-236. DOI: 10.1007/S00122-002-0929-X  0.381
2001 Bennetzen JL, Chandler VL, Schnable P. National Science Foundation-sponsored workshop report. Maize genome sequencing project. Plant Physiology. 127: 1572-8. PMID 11743101 DOI: 10.1104/Pp.010817  0.732
2001 Tikhonov AP, Lavie L, Tatout C, Bennetzen JL, Avramova Z, Deragon JM. Target sites for SINE integration in Brassica genomes display nuclear matrix binding activity Chromosome Research. 9: 325-337. PMID 11419796 DOI: 10.1023/A:1016650830798  0.51
2001 Dubcovsky J, Ramakrishna W, SanMiguel PJ, Busso CS, Yan L, Shiloff BA, Bennetzen JL. Comparative sequence analysis of colinear barley and rice bacterial artificial chromosomes Plant Physiology. 125: 1342-1353. PMID 11244114 DOI: 10.1104/Pp.125.3.1342  0.554
2001 Bennetzen J, Buckler E, Chandler V, Doebley J, Dorweiler J, Gaut B, Freeling M, Hake S, Kellogg E, Poethig RS, Walbot V, Wessler S. Genetic Evidence and the Origin of Maize Latin American Antiquity. 12: 84-86. DOI: 10.2307/971759  0.774
2000 Kumar A, Bennetzen JL. Retrotransposons: Central players in the structure, evolution and function of plant genomes Trends in Plant Science. 5: 509-510. PMID 11200422 DOI: 10.1016/S1360-1385(00)01760-X  0.552
2000 Bennetzen JL. The many hues of plant heterochromatin Genome Biology. 1: REVIEWS107. PMID 11104526 DOI: 10.1186/Gb-2000-1-1-Reviews107  0.4
2000 Bennetzen JL. Comparative sequence analysis of plant nuclear genomes: Microcolinearity and its many exceptions Plant Cell. 12: 1021-1029. PMID 10899971 DOI: 10.1105/Tpc.12.7.1021  0.531
2000 Bennetzen JL. Transposable element contributions to plant gene and genome evolution Plant Molecular Biology. 42: 251-269. PMID 10688140 DOI: 10.1023/A:1006344508454  0.597
2000 Tikhonov AP, Bennetzen JL, Avramova ZV. Structural domains and matrix attachment regions along colinear chromosomal segments of maize and sorghum Plant Cell. 12: 249-264. PMID 10662861 DOI: 10.1105/Tpc.12.2.249  0.53
1999 Kumar A, Bennetzen JL. Plant retrotransposons Annual Review of Genetics. 33: 479-532. PMID 10690416 DOI: 10.1146/annurev.genet.33.1.479  0.42
1999 Bennetzen JL. Plant genomics takes root, branches out Trends in Genetics. 15: 85-87. PMID 10203799 DOI: 10.1016/S0168-9525(98)01683-7  0.533
1999 Tikhonov AP, SanMiguel PJ, Nakajima Y, Gorenstein NM, Bennetzen JL, Avramova Z. Colinearity and its exceptions in orthologous adh regions of maize and sorghum Proceedings of the National Academy of Sciences of the United States of America. 96: 7409-7414. DOI: 10.1073/Pnas.96.13.7409  0.611
1998 Bennetzen JL. The evolution of grass genome organisation and function Symposia of the Society For Experimental Biology. 51: 123-126. PMID 10645434  0.512
1998 Bevan M, Bennetzen JL, Martienssen R. Genome studies and molecular evolution. Commonalities, contrasts, continuity and change in plant genomes Current Opinion in Plant Biology. 1: 101-102. PMID 10066580 DOI: 10.1016/S1369-5266(98)80009-5  0.691
1998 Bennetzen JL. The structure and evolution of angiosperm nuclear genomes Current Opinion in Plant Biology. 1: 103-108. PMID 10066579 DOI: 10.1016/S1369-5266(98)80010-1  0.621
1998 SanMiguel P, Gaut BS, Tikhonov A, Nakajima Y, Bennetzen JL. The paleontology of intergene retrotransposons of maize. Nature Genetics. 20: 43-5. PMID 9731528 DOI: 10.1038/1695  0.627
1998 Chen M, SanMiguel P, Bennetzen JL. Sequence organization and conservation in sh2/a1-homologous regions of sorghum and rice Genetics. 148: 435-443. PMID 9475753  0.333
1998 Avramova Z, Tikhonov A, Chen M, Bennetzen JL. Matrix attachment regions and structural colinearity in the genomes of two grass species Nucleic Acids Research. 26: 761-767. PMID 9443968 DOI: 10.1093/Nar/26.3.761  0.587
1998 Bennetzen JL, Kellogg EA, Lee M, Messing J. A plant genome initiative Plant Cell. 10: 488-493. DOI: 10.1105/Tpc.10.4.488  0.463
1998 Bennetzen JL, Sanmiguel P, Chen M, Tikhonov A, Francki M, Avramova Z. Grass genomes Proceedings of the National Academy of Sciences of the United States of America. 95: 1975-1978. DOI: 10.1073/Pnas.95.5.1975  0.652
1998 Sanmiguel P, Bennetzen JL. Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons Annals of Botany. 82: 37-44. DOI: 10.1006/Anbo.1998.0746  0.558
1997 Bennetzen JL, Kellogg EA. Do Plants Have a One-Way Ticket to Genomic Obesity? The Plant Cell. 9: 1509-1514. PMID 12237393 DOI: 10.1105/Tpc.9.9.1509  0.397
1997 Bennetzen JL, Freeling M. The unified grass genome: Synergy in synteny Genome Research. 7: 301-306. PMID 9110169 DOI: 10.1101/Gr.7.4.301  0.697
1997 Frederick RD, Chiu J, Bennetzen JL, Handa AK. Identification of a Pathogenicity locus, rpfA, in Erwinia carotovora subsp. carotovora that encodes a two-component sensor-regulator protein Molecular Plant-Microbe Interactions. 10: 407-415. PMID 9100385 DOI: 10.1094/Mpmi.1997.10.3.407  0.329
1997 Chen M, Sanmiguel P, De Oliveira AC, Woo SS, Zhang H, Wing RA, Bennetzen JL. Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes Proceedings of the National Academy of Sciences of the United States of America. 94: 3431-3435. PMID 9096411 DOI: 10.1073/Pnas.94.7.3431  0.455
1997 Petrov D, Bennetzen JL, Kellogg EA. Slow but Steady: Reduction of Genome Size through Biased Mutation [with Reply] The Plant Cell. 9: 1900. DOI: 10.2307/3870552  0.405
1997 SanMiguel P, Tikhonov A, Jin Y, Motchoulskaia N, Zakharov D, Melake-Berhan A, Springer P, Edwards K, Lee M, Avramova Z, Bennetzen J. Retrotransposons in the genome Trends in Plant Science. 2: 7. DOI: 10.1016/S1360-1385(97)82729-X  0.435
1996 Bennetzen JL, SanMiguel P, Liu CN, Chen M, Tikhonov A, Costa de Oliveira A, Jin YK, Avramova Z, Woo SS, Zhang H, Wing RA. The Hybaid Lecture. Microcollinearity and segmental duplication in the evolution of grass nuclear genomes. Symposia of the Society For Experimental Biology. 50: 1-3. PMID 9039427  0.53
1996 Avramova Z, Tikhonov A, SanMiguel P, Jin YK, Liu C, Woo SS, Wing RA, Bennetzen JL. Gene identification in a complex chromosomal continuum by local genomic cross-referencing Plant Journal. 10: 1163-1168. PMID 9011097 DOI: 10.1046/J.1365-313X.1996.10061163.X  0.612
1996 Chen M, Bennetzen JL. Sequence composition and organization in the Sh2/A1-homologous region of rice Plant Molecular Biology. 32: 999-1001. PMID 9002598 DOI: 10.1007/Bf00041383  0.351
1996 Bennetzen JL. The contributions of retroelements to plant genome organization, function and evolution Trends in Microbiology. 4: 347-353. PMID 8885169 DOI: 10.1016/0966-842X(96)10042-1  0.494
1996 SanMiguel P, Tikhonov A, Jin YK, Motchoulskaia N, Zakharov D, Melake-Berhan A, Springer PS, Edwards KJ, Lee M, Avramova Z, Bennetzen JL. Nested retrotransposons in the intergenic regions of the maize genome Science. 274: 765-768. PMID 8864112 DOI: 10.1126/Science.274.5288.765  0.598
1996 De Oliveira AC, Richter T, Bennetzen JL. Regional and racial specificities in sorghum germplasm assessed with DNA markers Genome. 39: 579-587. PMID 8675002 DOI: 10.1139/G96-073  0.303
1996 Yang W, De Oliveira AC, Godwin I, Schertz K, Bennetzen JL. Comparison of DNA marker technologies in characterizing plant genome diversity: Variability in Chinese sorghums Crop Science. 36: 1669-1676. DOI: 10.2135/Cropsci1996.0011183X003600060042X  0.426
1996 Edwards KJ, Veuskens J, Rawles H, Daly A, Bennetzen JL. Characterization of four dispersed repetitive DNA sequences from Zea mays and their use in constructing contiguous DNA fragments using YAC clones Genome. 39: 811-817. DOI: 10.1139/G96-102  0.52
1995 Salimath SS, De Oliveira AC, Godwin ID, Bennetzen JL. Assessment of genome origins and genetic diversity in the genus Eleusine with DNA markers Genome. 38: 757-763. PMID 7672607 DOI: 10.1139/G95-096  0.418
1995 Avramova Z, SanMiguel P, Georgieva E, Bennetzen JL. Matrix attachment regions and transcribed sequences within a long chromosomal continuum containing maize Adh1 Plant Cell. 7: 1667-1680. PMID 7580257 DOI: 10.1105/Tpc.7.10.1667  0.416
1995 Kantety RV, Zeng X, Bennetzen JL, Zehr BE. Assessment of genetic diversity in dent and popcorn (Zea mays L.) inbred lines using inter-simple sequence repeat (ISSR) amplification Molecular Breeding. 1: 365-373. DOI: 10.1007/Bf01248414  0.393
1995 Sanz-Alferez S, Richter TE, Hulbert SH, Bennetzen JL. The Rp3 disease resistance gene of maize: mapping and characterization of introgressed alleles Theoretical and Applied Genetics. 91: 25-32. DOI: 10.1007/Bf00220854  0.36
1994 Springer PS, Edwards KJ, Bennetzen JL. DNA class organization on maize Adh1 yeast artificial chromosomes Proceedings of the National Academy of Sciences of the United States of America. 91: 863-867. PMID 8302858 DOI: 10.1073/Pnas.91.3.863  0.558
1994 Bennetzen JL, Schrick K, Springer PS, Brown WE, SanMiguel P. Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 37: 565-76. PMID 7958822 DOI: 10.1139/G94-081  0.47
1994 Jin YK, Bennetzen JL. Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize Plant Cell. 6: 1177-1186. PMID 7919987 DOI: 10.1105/Tpc.6.8.1177  0.46
1994 Thomas CM, Jones DA, English JJ, Carroll BJ, Bennetzen JL, Harrison K, Burbidge A, Bishop GJ, Jones JDG. Analysis of the chromosomal distribution of transposon-carrying T-DNAs in tomato using the inverse polymerase chain reaction Mgg Molecular & General Genetics. 242: 573-585. PMID 7907167 DOI: 10.1007/Bf00285281  0.402
1994 Bennetzen J. Genes, crops and the environmentby John Holden, James Peacock and Trevor Williams Cambridge University Press, 1993. (176 pages) £12.95/$19.95 pbk ISBN 0 521 43737 7 £30.00/$49.95 hbk ISBN 0 521 43137 9 Trends in Genetics. 10: 32-32. DOI: 10.1016/0168-9525(94)90017-5  0.354
1994 Bennetzen JL, Springer PS. The generation of Mutator transposable element subfamilies in maize Theoretical and Applied Genetics: International Journal of Plant Breeding Research. 87: 657-667. DOI: 10.1007/Bf00222890  0.408
1993 Berhan AM, Hulbert SH, Butler LG, Bennetzen JL. Structure and evolution of the genomes ofsorghum bicolor andZea mays. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 86: 598-604. PMID 24193709 DOI: 10.1007/BF00838715  0.427
1993 Avramova Z, Bennetzen JL. Isolation of matrices from maize leaf nuclei: identification of a matrix-binding site adjacent to the Adh1 gene Plant Molecular Biology. 22: 1135-1143. PMID 8400129 DOI: 10.1007/Bf00028982  0.397
1993 Hong KS, Richter TE, Bennetzen JL, Hulbert SH. Complex duplications in maize lines Mgg Molecular & General Genetics. 239: 115-121. PMID 8099709 DOI: 10.1007/Bf00281609  0.414
1992 Ingels SC, Bennetzen JL, Hulbert SH, Qin M, Ellingboe AH. Mutator transposable elements that occur in clusters in the maize genome Journal of Heredity. 83: 114-118. DOI: 10.1093/Oxfordjournals.Jhered.A111169  0.395
1991 Lyznik LA, McGee JD, Tung PY, Bennetzen JL, Hodges TK. Homologous recombination between plasmid DNA molecules in maize protoplasts Mgg Molecular & General Genetics. 230: 209-218. PMID 1745230 DOI: 10.1007/Bf00290670  0.434
1991 Hulbert SH, Bennetzen JL. Recombination at the Rp1 locus of maize Mgg Molecular & General Genetics. 226: 377-382. PMID 1674815 DOI: 10.1007/Bf00260649  0.347
1990 Hulbert SH, Richter TE, Axtell JD, Bennetzen JL. Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes. Proceedings of the National Academy of Sciences of the United States of America. 87: 4251-5. PMID 1971947 DOI: 10.1073/Pnas.87.11.4251  0.418
1989 Springer PS, Zimmer EA, Bennetzen JL. Genomic organization of the ribosomal DNA of sorghum and its close relatives. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 77: 844-50. PMID 24232902 DOI: 10.1007/Bf00268337  0.445
1989 Jin YK, Bennetzen JL. Structure and coding properties of Bs1, a maize retrovirus-like transposon Proceedings of the National Academy of Sciences of the United States of America. 86: 6235-6239. PMID 2474829 DOI: 10.1073/Pnas.86.16.6235  0.399
1989 Eckdahl TT, Bennetzen JL, Anderson JN. DNA structures associated with autonomously replicating sequences from plants Plant Molecular Biology. 12: 507-516. DOI: 10.1007/Bf00036965  0.474
1987 Lee L, Fenoll C, Bennetzen JL. Construction and Homologous Expression of a Maize Adh1 Based NcoI Cassette Vector. Plant Physiology. 85: 327-330. PMID 16665696 DOI: 10.1104/Pp.85.2.327  0.42
1987 Bennetzen JL, Fracasso RP, Morris DW, Robertson DS, Skogen-Hagenson MJ. Concomitant regulation of Mu1 transposition and Mutator activity in maize Mgg Molecular & General Genetics. 208: 57-62. DOI: 10.1007/Bf00330422  0.345
1987 Bennetzen JL. Covalent DNA modification and the regulation of Mutator element transposition in maize Mgg Molecular & General Genetics. 208: 45-51. DOI: 10.1007/Bf00330420  0.319
1984 Bennetzen JL, Swanson J, Taylor WC, Freeling M. DNA insertion in the first intron of maize Adh1 affects message levels: Cloning of progenitor and mutant Adh1 alleles Proceedings of the National Academy of Sciences of the United States of America. 81: 4125-4128. PMID 6330742 DOI: 10.1073/Pnas.81.13.4125  0.641
1984 Dennis ES, Gerlach WL, Pryor AJ, Bennetzen JL, Inglis A, Llewellyn D, Sachs MM, Ferl RJ, Peacock WJ. Molecular analysis of the alcohol dehydrogenase (Adh1) gene of maize. Nucleic Acids Research. 12: 3983-4000. PMID 6328449 DOI: 10.1093/Nar/12.9.3983  0.756
1984 Barker RF, Thompson DV, Talbot DR, Swanson J, Bennetzen JL. Nucieotide sequence of the maize transposable element Mul Nucleic Acids Research. 12: 5955-5967. PMID 6089104 DOI: 10.1093/Nar/12.15.5955  0.417
1984 Barker RF, Thompson DV, Talbot DR, Swanson J, Bennetzen JL. Nucleotide sequence of the maize transposable element Mul Nucleic Acids Research. 12: 6924. DOI: 10.1093/nar/12.17.6924-a  0.318
1982 Bennetzen JL, Hall BD. Codon selection in yeast Journal of Biological Chemistry. 257: 3026-3031. PMID 7037777  0.573
1982 Bennetzen JL, Hall BD. The primary structure of the Saccharomyces cerevisiae gene for alcohol dehydrogenase Journal of Biological Chemistry. 257: 3018-3025. PMID 6277922  0.576
1982 Strommer JN, Hake S, Bennetzen J, Taylor WC, Freeling M. Regulatory mutants of the maize Adh1 gene caused by DNA insertions Nature. 300: 542-544. DOI: 10.1038/300542A0  0.727
1980 Williamson VM, Bennetzen J, Young ET, Nasmyth K, Hall BD. Isolation of the structural gene for alcohol dehydrogenase by genetic complementation in yeast. Nature. 283: 214-6. PMID 6985717 DOI: 10.1038/283214A0  0.592
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