Hans Ellegren - Publications

Evolutionary Biology Uppsala University, Uppsala, Uppsala län, Sweden 
avian genome evolution

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chase MA, Ellegren H, Mugal CF. Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs. Evolution; International Journal of Organic Evolution. PMID 33851440 DOI: 10.1111/evo.14234  0.36
2020 Mugal CF, Wang M, Backström N, Wheatcroft D, Ålund M, Sémon M, McFarlane SE, Dutoit L, Qvarnström A, Ellegren H. Tissue-specific patterns of regulatory changes underlying gene expression differences among flycatchers and their naturally occurring F hybrids. Genome Research. PMID 33144405 DOI: 10.1101/gr.254508.119  0.36
2019 Bolívar P, Guéguen L, Duret L, Ellegren H, Mugal CF. GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes. Genome Biology. 20: 5. PMID 30616647 DOI: 10.1186/S13059-018-1613-Z  0.36
2018 Dutoit L, Mugal CF, Bolívar P, Wang M, Nadachowska-Brzyska K, Smeds L, Papoli H, Gustafsson L, Ellegren H. Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome. Molecular Ecology. PMID 30055065 DOI: 10.1111/Mec.14789  0.36
2018 Ekblom R, Brechlin B, Persson J, Smeds L, Johansson M, Magnusson J, Flagstad Ø, Ellegren H. Genome sequencing and conservation genomics in the Scandinavian wolverine population. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 29935028 DOI: 10.1111/Cobi.13157  0.56
2017 Kawakami T, Mugal CF, Suh A, Nater A, Burri R, Smeds L, Ellegren H. Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds. Molecular Ecology. PMID 28597534 DOI: 10.1111/Mec.14197  0.36
2017 Dutoit L, Vijay N, Mugal CF, Bossu CM, Burri R, Wolf J, Ellegren H. Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting. Proceedings. Biological Sciences. 284. PMID 28202815 DOI: 10.1098/Rspb.2016.2756  0.36
2016 Dutoit L, Burri R, Nater A, Mugal CF, Ellegren H. Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome. Molecular Ecology Resources. PMID 27717155 DOI: 10.1111/1755-0998.12602  0.36
2016 Smeds L, Mugal CF, Qvarnström A, Ellegren H. High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree. Plos Genetics. 12: e1006044. PMID 27219623 DOI: 10.1371/Journal.Pgen.1006044  0.36
2015 Bolívar P, Mugal CF, Nater A, Ellegren H. Recombination rate variation modulates gene sequence evolution mainly via GC-biased gene conversion, not Hill-Robertson interference, in an avian system. Molecular Biology and Evolution. PMID 26446902 DOI: 10.1093/Molbev/Msv214  0.36
2010 Brøseth H, Flagstad Ø, Wärdig C, Johansson M, Ellegren H. Large-scale noninvasive genetic monitoring of wolverines using scats reveals density dependent adult survival Biological Conservation. 143: 113-120. DOI: 10.1016/j.biocon.2009.09.012  0.56
2004 Wong GK, Liu B, Wang J, Zhang Y, Yang X, Zhang Z, Meng Q, Zhou J, Li D, Zhang J, Ni P, Li S, Ran L, Li H, Zhang J, ... ... Ellegren H, et al. A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature. 432: 717-22. PMID 15592405 DOI: 10.1038/nature03156  0.56
1998 Lindgren G, Sandberg K, Persson H, Marklund S, Breen M, Sandgren B, Carlstén J, Ellegren H. A primary male autosomal linkage map of the horse genome. Genome Research. 8: 951-66. PMID 9750194 DOI: 10.1101/Gr.8.9.951  0.4
1998 Fridolfsson AK, Cheng H, Copeland NG, Jenkins NA, Liu HC, Raudsepp T, Woodage T, Chowdhary B, Halverson J, Ellegren H. Evolution of the avian sex chromosomes from an ancestral pair of autosomes. Proceedings of the National Academy of Sciences of the United States of America. 95: 8147-52. PMID 9653155 DOI: 10.1073/Pnas.95.14.8147  0.4
1998 Knott SA, Marklund L, Haley CS, Andersson K, Davies W, Ellegren H, Fredholm M, Hansson I, Hoyheim B, Lundström K, Moller M, Andersson L. Multiple marker mapping of quantitative trait loci in a cross between outbred wild boar and large white pigs. Genetics. 149: 1069-80. PMID 9611214  0.56
1998 Hasler-Rapacz J, Ellegren H, Fridolfsson AK, Kirkpatrick B, Kirk S, Andersson L, Rapacz J. Identification of a mutation in the low density lipoprotein receptor gene associated with recessive familial hypercholesterolemia in swine. American Journal of Medical Genetics. 76: 379-86. PMID 9556295 DOI: 10.1002/(Sici)1096-8628(19980413)76:5<379::Aid-Ajmg3>3.0.Co;2-I  0.56
1996 Ellegren H, Mikko S, Wallin K, Andersson L. Limited polymorphism at major histocompatibility complex (MHC) loci in the Swedish moose A. alces. Molecular Ecology. 5: 3-9. PMID 9147694 DOI: 10.1111/J.1365-294X.1996.Tb00286.X  0.56
1996 Marklund L, Johansson Moller M, Høyheim B, Davies W, Fredholm M, Juneja RK, Mariani P, Coppieters W, Ellegren H, Andersson L. A comprehensive linkage map of the pig based on a wild pig-Large White intercross. Animal Genetics. 27: 255-69. PMID 8856923 DOI: 10.1111/J.1365-2052.1996.Tb00487.X  0.56
1996 Mariani P, Moller MJ, Høyheim B, Marklund L, Davies W, Ellegren H, Andersson L. The extension coat color locus and the loci for blood group O and tyrosine aminotransferase are on pig chromosome 6. The Journal of Heredity. 87: 272-6. PMID 8776875  0.56
1995 Johansson M, Ellegren H, Andersson L. Comparative mapping reveals extensive linkage conservation--but with gene order rearrangements--between the pig and the human genomes. Genomics. 25: 682-90. PMID 7759103 DOI: 10.1016/0888-7543(95)80011-A  0.56
1994 Chowdhary BP, Ellegren H, Johansson M, Andersson L, Gustavsson I. In situ hybridization mapping of the growth hormone receptor (GHR) gene assigns a linkage group (C9, FS, GHR, and S0105) to chromosome 16 in pigs. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 5: 160-2. PMID 8199404 DOI: 10.1007/Bf00352347  0.56
1994 Marklund S, Ellegren H, Eriksson S, Sandberg K, Andersson L. Parentage testing and linkage analysis in the horse using a set of highly polymorphic microsatellites. Animal Genetics. 25: 19-23. PMID 8161016 DOI: 10.1111/J.1365-2052.1994.Tb00442.X  0.56
1994 Andersson L, Haley CS, Ellegren H, Knott SA, Johansson M, Andersson K, Andersson-Eklund L, Edfors-Lilja I, Fredholm M, Hansson I. Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science (New York, N.Y.). 263: 1771-4. PMID 8134840 DOI: 10.1126/Science.8134840  0.56
1994 Ellegren H, Johansson M, Hartman G, Andersson L. DNA fingerprinting with the human 33.6 minisatellite probe identifies sex in beavers Castor fiber. Molecular Ecology. 3: 273-4. PMID 8061881 DOI: 10.1111/J.1365-294X.1994.Tb00063.X  0.56
1994 Ellegren H, Chowdhary BP, Johansson M, Marklund L, Fredholm M, Gustavsson I, Andersson L. A primary linkage map of the porcine genome reveals a low rate of genetic recombination. Genetics. 137: 1089-100. PMID 7982563  0.56
1994 Ellegren H, Chowdhary B, Johansson M, Andersson L. Integrating the porcine physical and linkage map using cosmid-derived markers. Animal Genetics. 25: 155-64. PMID 7943949 DOI: 10.1111/J.1365-2052.1994.Tb00104.X  0.56
1994 Johansson M, Ellegren H, Marklund L, Coppieters W, Andersson L. Linkage maps of porcine chromosomes 3, 6, and 9 based on 31 polymorphic markers. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 5: 785-90. PMID 7894160 DOI: 10.1007/Bf00292014  0.56
1994 Ellegren H, Chowdhary BP, Fredholm M, Høyheim B, Johansson M, Bräuner Nielsen PB, Thomsen PD, Andersson L. A physically anchored linkage map of pig chromosome 1 uncovers sex- and position-specific recombination rates. Genomics. 24: 342-50. PMID 7698757 DOI: 10.1006/Geno.1994.1625  0.56
1993 Lagercrantz U, Ellegren H, Andersson L. The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Research. 21: 1111-5. PMID 8464696 DOI: 10.1093/Nar/21.5.1111  0.56
1993 Ellegren H, Hartman G, Johansson M, Andersson L. Major histocompatibility complex monomorphism and low levels of DNA fingerprinting variability in a reintroduced and rapidly expanding population of beavers. Proceedings of the National Academy of Sciences of the United States of America. 90: 8150-3. PMID 8367476 DOI: 10.1073/Pnas.90.17.8150  0.56
1993 Edfors-Lilja I, Ellegren H, Winterø AK, Ruohonen-Lehto M, Fredholm M, Gustafsson U, Juneja RK, Andersson L. A large linkage group on pig chromosome 7 including the MHC class I, class II (DQB), and class III (TNFB) genes. Immunogenetics. 38: 363-6. PMID 8344723 DOI: 10.1007/Bf00210479  0.56
1993 Ellegren H, Fredholm M, Edfors-Lilja I, Winterø AK, Andersson L. Conserved synteny between pig chromosome 8 and human chromosome 4 but rearranged and distorted linkage maps. Genomics. 17: 599-603. PMID 8244376 DOI: 10.1006/Geno.1993.1378  0.56
1993 Ellegren H, Davies CJ, Andersson L. Strong association between polymorphisms in an intronic microsatellite and in the coding sequence of the BoLA-DRB3 gene: implications for microsatellite stability and PCR-based DRB3 typing. Animal Genetics. 24: 269-75. PMID 8239071 DOI: 10.1111/J.1365-2052.1993.Tb00310.X  0.56
1993 Johansson M, Chowdhary B, Gu F, Ellegren H, Gustavsson I, Andersson L. Genetic analysis of the gene for porcine submaxillary gland mucin: physical assignment of the MUC and interferon gamma genes to chromosome 5. The Journal of Heredity. 84: 259-62. PMID 8101856 DOI: 10.1093/Oxfordjournals.Jhered.A111336  0.56
1993 Chowdhary BP, Johansson M, Chaudhary R, Ellegren H, Gu F, Andersson L, Gustavsson I. In situ hybridization mapping and restriction fragment length polymorphism analysis of the porcine albumin (ALB) and transferrin (TF) genes. Animal Genetics. 24: 85-90. PMID 8101068 DOI: 10.1111/J.1365-2052.1993.Tb00245.X  0.56
1992 Johansson M, Ellegren H, Andersson L. Cloning and characterization of highly polymorphic porcine microsatellites. The Journal of Heredity. 83: 196-8. PMID 1624765 DOI: 10.1093/Oxfordjournals.Jhered.A111191  0.56
1992 Ellegren H, Andersson L, Johansson M, Sandberg K. DNA fingerprinting in horses using a simple (TG)n probe and its application to population comparisons. Animal Genetics. 23: 1-9. PMID 1570891 DOI: 10.1111/J.1365-2052.1992.Tb00226.X  0.56
1992 Ellegren H, Johansson M, Sandberg K, Andersson L. Cloning of highly polymorphic microsatellites in the horse. Animal Genetics. 23: 133-42. PMID 1443772 DOI: 10.1111/J.1365-2052.1992.Tb00032.X  0.56
1992 Johansson M, Ellegren H, Marklund L, Gustavsson U, Ringmar-Cederberg E, Andersson K, Edfors-Lilja I, Andersson L. The gene for dominant white color in the pig is closely linked to ALB and PDGRFRA on chromosome 8. Genomics. 14: 965-9. PMID 1362182 DOI: 10.1016/S0888-7543(05)80118-1  0.56
1992 Mariani P, Johansson M, Ellegren H, Harbitz I, Juneja RK, Andersson L. Multiple restriction fragment length polymorphisms in the porcine calcium release channel gene (CRC): assignment to the halothane (HAL) linkage group. Animal Genetics. 23: 257-62. PMID 1354420 DOI: 10.1111/J.1365-2052.1992.Tb00138.X  0.56
1991 Mariani P, Johansson M, Ellegren H, Andersson L. TaqI and PvuII restriction fragment length polymorphisms at the porcine plasminogen activator, urokinase, locus (PLAU). Animal Genetics. 22: 447. PMID 1685640 DOI: 10.1111/J.1365-2052.1991.Tb00714.X  0.56
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