Hans Ellegren - Publications

Affiliations: 
Evolutionary Biology Uppsala University, Uppsala, Uppsala län, Sweden 
Area:
avian genome evolution

252 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Smeds L, Kojola I, Ellegren H. The evolutionary history of grey wolf Y chromosomes. Molecular Ecology. PMID 30788868 DOI: 10.1111/mec.15054  0.4
2019 Nadachowska-Brzyska K, Burri R, Ellegren H. Footprints of adaptive evolution revealed by whole Z chromosomes haplotypes in flycatchers. Molecular Ecology. PMID 30653779 DOI: 10.1111/mec.15021  0.4
2019 Bolívar P, Guéguen L, Duret L, Ellegren H, Mugal CF. GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes. Genome Biology. 20: 5. PMID 30616647 DOI: 10.1186/s13059-018-1613-z  0.48
2018 Yazdi HP, Ellegren H. A Genetic Map of Ostrich Z Chromosome and the Role of Inversions in Avian Sex Chromosome Evolution. Genome Biology and Evolution. 10: 2049-2060. PMID 30099482 DOI: 10.1093/gbe/evy163  0.68
2018 Dutoit L, Mugal CF, Bolívar P, Wang M, Nadachowska-Brzyska K, Smeds L, Papoli H, Gustafsson L, Ellegren H. Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome. Molecular Ecology. PMID 30055065 DOI: 10.1111/mec.14789  0.48
2018 Ekblom R, Brechlin B, Persson J, Smeds L, Johansson M, Magnusson J, Flagstad Ø, Ellegren H. Genome sequencing and conservation genomics in the Scandinavian wolverine population. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 29935028 DOI: 10.1111/cobi.13157  0.52
2018 Kardos M, Åkesson M, Fountain T, Flagstad Ø, Liberg O, Olason P, Sand H, Wabakken P, Wikenros C, Ellegren H. Genomic consequences of intensive inbreeding in an isolated wolf population. Nature Ecology & Evolution. 2: 124-131. PMID 29158554 DOI: 10.1038/s41559-017-0375-4  0.36
2017 Suh A, Smeds L, Ellegren H. Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes. Molecular Ecology. PMID 29171119 DOI: 10.1111/mec.14439  0.48
2017 Kawakami T, Mugal CF, Suh A, Nater A, Burri R, Smeds L, Ellegren H. Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds. Molecular Ecology. PMID 28597534 DOI: 10.1111/mec.14197  0.48
2017 Vijay N, Weissensteiner M, Burri R, Kawakami T, Ellegren H, Wolf JBW. Genome-wide patterns of variation in genetic diversity are shared among populations, species and higher order taxa. Molecular Ecology. PMID 28570015 DOI: 10.1111/mec.14195  0.6
2017 Wang M, Uebbing S, Ellegren H. Bayesian Inference of Allele-Specific Gene Expression Indicates Abundant cis-regulatory Variation in Natural Flycatcher Populations. Genome Biology and Evolution. PMID 28453623 DOI: 10.1093/gbe/evx080  0.4
2017 Dutoit L, Vijay N, Mugal CF, Bossu CM, Burri R, Wolf J, Ellegren H. Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting. Proceedings. Biological Sciences. 284. PMID 28202815 DOI: 10.1098/rspb.2016.2756  0.48
2017 Kardos M, Qvarnström A, Ellegren H. Inferring Individual Inbreeding and Demographic History from Segments of Identity by Descent in Ficedula Flycatcher Genome Sequences. Genetics. PMID 28100590 DOI: 10.1534/genetics.116.198861  0.52
2017 Knief U, Schielzeth H, Backström N, Hemmrich-Stanisak G, Wittig M, Franke A, Griffith SC, Ellegren H, Kempenaers B, Forstmeier W. Association mapping of morphological traits in wild and captive zebra finches: reliable within but not between populations. Molecular Ecology. PMID 28100011 DOI: 10.1111/mec.14009  0.68
2016 Dutoit L, Burri R, Nater A, Mugal CF, Ellegren H. Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome. Molecular Ecology Resources. PMID 27717155 DOI: 10.1111/1755-0998.12602  0.48
2016 Rönnegård L, McFarlane SE, Husby A, Kawakami T, Ellegren H, Qvarnström A. Increasing the power of genome wide association studies in natural populations using repeated measures - evaluation and implementation. Methods in Ecology and Evolution / British Ecological Society. 7: 792-799. PMID 27478587 DOI: 10.1111/2041-210X.12535  0.52
2016 Smeds L, Qvarnstrom A, Ellegren H. Direct estimate of the rate of germline mutation in a bird. Genome Research. PMID 27412854 DOI: 10.1101/gr.204669.116  0.4
2016 Smeds L, Mugal CF, Qvarnström A, Ellegren H. High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree. Plos Genetics. 12: e1006044. PMID 27219623 DOI: 10.1371/journal.pgen.1006044  0.52
2016 Figuet E, Nabholz B, Bonneau M, Mas Carrio E, Nadachowska-Brzyska K, Ellegren H, Galtier N. Life History Traits, Protein Evolution, and the Nearly Neutral Theory in Amniotes. Molecular Biology and Evolution. PMID 26944704 DOI: 10.1093/molbev/msw033  0.72
2016 Uebbing S, Künstner A, Mäkinen H, Backström N, Bolivar P, Burri R, Dutoit L, Mugal CF, Nater A, Aken B, Flicek P, Martin FJ, Searle SM, Ellegren H. Divergence in gene expression within and between two closely related flycatcher species. Molecular Ecology. PMID 26928872 DOI: 10.1111/mec.13596  0.72
2016 Nadachowska-Brzyska K, Burri R, Smeds L, Ellegren H. PSMC-analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers. Molecular Ecology. PMID 26797914 DOI: 10.1111/mec.13540  0.48
2015 Kardos M, Husby A, McFarlane SE, Qvarnström A, Ellegren H. Whole genome resequencing of extreme phenotypes in collared flycatchers highlights the difficulty of detecting quantitative trait loci in natural populations. Molecular Ecology Resources. PMID 26649993 DOI: 10.1111/1755-0998.12498  0.72
2015 Bolívar P, Mugal CF, Nater A, Ellegren H. Recombination rate variation modulates gene sequence evolution mainly via GC-biased gene conversion, not Hill-Robertson interference, in an avian system. Molecular Biology and Evolution. PMID 26446902 DOI: 10.1093/molbev/msv214  0.48
2015 Mugal CF, Weber CC, Ellegren H. GC-biased gene conversion links the recombination landscape and demography to genomic base composition: GC-biased gene conversion drives genomic base composition across a wide range of species. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 26445215 DOI: 10.1002/bies.201500058  0.72
2015 Burri R, Nater A, Kawakami T, Mugal CF, Olason PI, Smeds L, Suh A, Dutoit L, Bureš S, Garamszegi LZ, Hogner S, Moreno J, Qvarnström A, Ružić M, Sæther SA, ... ... Ellegren H, et al. Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers. Genome Research. 25: 1656-65. PMID 26355005 DOI: 10.1101/gr.196485.115  0.72
2015 Suh A, Smeds L, Ellegren H. The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds. Plos Biology. 13: e1002224. PMID 26284513 DOI: 10.1371/journal.pbio.1002224  0.72
2015 Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, ... ... Ellegren H, et al. Third Report on Chicken Genes and Chromosomes 2015. Prepared by. Cytogenetic and Genome Research. 145: 78-179. PMID 26282327 DOI: 10.1159/000430927  0.68
2015 Nater A, Burri R, Kawakami T, Smeds L, Ellegren H. Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data. Systematic Biology. 64: 1000-17. PMID 26187295 DOI: 10.1093/sysbio/syv045  0.72
2015 Uebbing S, Konzer A, Xu L, Backström N, Brunström B, Bergquist J, Ellegren H. Quantitative mass spectrometry reveals partial translational regulation for dosage compensation in chicken. Molecular Biology and Evolution. PMID 26108680 DOI: 10.1093/molbev/msv147  0.72
2015 Knief U, Schielzeth H, Ellegren H, Kempenaers B, Forstmeier W. A prezygotic transmission distorter acting equally in female and male zebra finches Taeniopygia guttata. Molecular Ecology. PMID 26087713 DOI: 10.1111/mec.13281  0.72
2015 Smeds L, Warmuth V, Bolivar P, Uebbing S, Burri R, Suh A, Nater A, Bureš S, Garamszegi LZ, Hogner S, Moreno J, Qvarnström A, Ruži? M, Sæther SA, Sætre GP, ... ... Ellegren H, et al. Evolutionary analysis of the female-specific avian W chromosome. Nature Communications. 6: 7330. PMID 26040272 DOI: 10.1038/ncomms8330  0.72
2015 Nadachowska-Brzyska K, Li C, Smeds L, Zhang G, Ellegren H. Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences. Current Biology : Cb. 25: 1375-80. PMID 25891404 DOI: 10.1016/j.cub.2015.03.047  0.72
2015 Husby A, Kawakami T, Rönnegård L, Smeds L, Ellegren H, Qvarnström A. Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait. Proceedings. Biological Sciences / the Royal Society. 282: 20150156. PMID 25833857 DOI: 10.1098/rspb.2015.0156  0.72
2015 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, ... ... Ellegren H, et al. Phylogenomic analyses data of the avian phylogenomics project. Gigascience. 4: 4. PMID 25741440 DOI: 10.1186/s13742-014-0038-1  0.72
2015 Mugal CF, Arndt PF, Holm L, Ellegren H. Evolutionary consequences of DNA methylation on the GC content in vertebrate genomes. G3 (Bethesda, Md.). 5: 441-7. PMID 25591920 DOI: 10.1534/g3.114.015545  0.72
2015 Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, ... ... Ellegren H, et al. Third Report on Chicken Genes and Chromosomes 2015: Cytogenetic and Genome Research. 145: 78-179. DOI: 10.1159/000430927  0.72
2015 Gervasi V, Brøseth H, Nilsen EB, Ellegren H, Flagstad Ø, Linnell JDC. Compensatory immigration counteracts contrasting conservation strategies of wolverines (Gulo gulo) within Scandinavia Biological Conservation. 191: 632-639. DOI: 10.1016/j.biocon.2015.07.024  0.72
2014 Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, ... ... Ellegren H, et al. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience. 3: 27. PMID 25671092 DOI: 10.1186/2047-217X-3-27  0.72
2014 Weber CC, Nabholz B, Romiguier J, Ellegren H. Kr/Kc but not dN/dS correlates positively with body mass in birds, raising implications for inferring lineage-specific selection. Genome Biology. 15: 542. PMID 25607475 DOI: 10.1186/s13059-014-0542-8  0.48
2014 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, ... ... Ellegren H, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/science.1253451  0.48
2014 Suh A, Weber CC, Kehlmaier C, Braun EL, Green RE, Fritz U, Ray DA, Ellegren H. Early mesozoic coexistence of amniotes and hepadnaviridae. Plos Genetics. 10: e1004559. PMID 25501991 DOI: 10.1371/journal.pgen.1004559  0.72
2014 Romanov MN, Farré M, Lithgow PE, Fowler KE, Skinner BM, O'Connor R, Fonseka G, Backström N, Matsuda Y, Nishida C, Houde P, Jarvis ED, Ellegren H, Burt DW, Larkin DM, et al. Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor. Bmc Genomics. 15: 1060. PMID 25496766 DOI: 10.1186/1471-2164-15-1060  0.72
2014 Smeds L, Kawakami T, Burri R, Bolivar P, Husby A, Qvarnström A, Uebbing S, Ellegren H. Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes. Nature Communications. 5: 5448. PMID 25378102 DOI: 10.1038/ncomms6448  0.72
2014 Ekblom R, Smeds L, Ellegren H. Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria. Bmc Genomics. 15: 467. PMID 24923674 DOI: 10.1186/1471-2164-15-467  0.72
2014 Kawakami T, Smeds L, Backström N, Husby A, Qvarnström A, Mugal CF, Olason P, Ellegren H. A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution. Molecular Ecology. 23: 4035-58. PMID 24863701 DOI: 10.1111/mec.12810  0.72
2014 Kawakami T, Backström N, Burri R, Husby A, Olason P, Rice AM, Ålund M, Qvarnström A, Ellegren H. Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array. Molecular Ecology Resources. 14: 1248-60. PMID 24784959 DOI: 10.1111/1755-0998.12270  0.72
2014 Yazdi HP, Ellegren H. Old but not (so) degenerated--slow evolution of largely homomorphic sex chromosomes in ratites. Molecular Biology and Evolution. 31: 1444-53. PMID 24618361 DOI: 10.1093/molbev/msu101  0.72
2014 Ellegren H. Genome sequencing and population genomics in non-model organisms. Trends in Ecology & Evolution. 29: 51-63. PMID 24139972 DOI: 10.1016/j.tree.2013.09.008  0.72
2013 Nadachowska-Brzyska K, Burri R, Olason PI, Kawakami T, Smeds L, Ellegren H. Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data. Plos Genetics. 9: e1003942. PMID 24244198 DOI: 10.1371/journal.pgen.1003942  0.72
2013 Uebbing S, Künstner A, Mäkinen H, Ellegren H. Transcriptome sequencing reveals the character of incomplete dosage compensation across multiple tissues in flycatchers. Genome Biology and Evolution. 5: 1555-66. PMID 23925789 DOI: 10.1093/gbe/evt114  0.72
2013 Poelstra JW, Ellegren H, Wolf JB. An extensive candidate gene approach to speciation: diversity, divergence and linkage disequilibrium in candidate pigmentation genes across the European crow hybrid zone. Heredity. 111: 467-73. PMID 23881172 DOI: 10.1038/hdy.2013.68  0.72
2013 Mugal CF, Arndt PF, Ellegren H. Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype. Molecular Biology and Evolution. 30: 1700-12. PMID 23564940 DOI: 10.1093/molbev/mst067  0.72
2013 Corl A, Ellegren H. Sampling strategies for species trees: the effects on phylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal. Molecular Phylogenetics and Evolution. 67: 358-66. PMID 23410742 DOI: 10.1016/j.ympev.2013.02.002  0.72
2013 Mugal CF, Nabholz B, Ellegren H. Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination. Bmc Genomics. 14: 86. PMID 23394684 DOI: 10.1186/1471-2164-14-86  0.72
2013 Adolfsson S, Ellegren H. Lack of dosage compensation accompanies the arrested stage of sex chromosome evolution in ostriches. Molecular Biology and Evolution. 30: 806-10. PMID 23329687 DOI: 10.1093/molbev/mst009  0.72
2013 Parsch J, Ellegren H. The evolutionary causes and consequences of sex-biased gene expression. Nature Reviews. Genetics. 14: 83-7. PMID 23329110 DOI: 10.1038/nrg3376  0.72
2013 Backström N, Saetre GP, Ellegren H. Inferring the demographic history of European Ficedula flycatcher populations. Bmc Evolutionary Biology. 13: 2. PMID 23282063 DOI: 10.1186/1471-2148-13-2  0.72
2013 Nabholz B, Ellegren H, Wolf JB. High levels of gene expression explain the strong evolutionary constraint of mitochondrial protein-coding genes. Molecular Biology and Evolution. 30: 272-84. PMID 23071102 DOI: 10.1093/molbev/mss238  0.72
2013 Ellegren H. The evolutionary genomics of birds Annual Review of Ecology, Evolution, and Systematics. 44: 239-259. DOI: 10.1146/annurev-ecolsys-110411-160327  0.72
2012 Ellegren H, Smeds L, Burri R, Olason PI, Backström N, Kawakami T, Künstner A, Mäkinen H, Nadachowska-Brzyska K, Qvarnström A, Uebbing S, Wolf JB. The genomic landscape of species divergence in Ficedula flycatchers. Nature. 491: 756-60. PMID 23103876 DOI: 10.1038/nature11584  0.72
2012 Corl A, Ellegren H. The genomic signature of sexual selection in the genetic diversity of the sex chromosomes and autosomes. Evolution; International Journal of Organic Evolution. 66: 2138-49. PMID 22759291 DOI: 10.1111/j.1558-5646.2012.01586.x  0.72
2012 Knief U, Schielzeth H, Kempenaers B, Ellegren H, Forstmeier W. QTL and quantitative genetic analysis of beak morphology reveals patterns of standing genetic variation in an Estrildid finch. Molecular Ecology. 21: 3704-17. PMID 22694741 DOI: 10.1111/j.1365-294X.2012.05661.x  0.72
2012 Nam K, Ellegren H. Recombination drives vertebrate genome contraction. Plos Genetics. 8: e1002680. PMID 22570634 DOI: 10.1371/journal.pgen.1002680  0.72
2012 Forstmeier W, Schielzeth H, Mueller JC, Ellegren H, Kempenaers B. Heterozygosity-fitness correlations in zebra finches: microsatellite markers can be better than their reputation. Molecular Ecology. 21: 3237-49. PMID 22554318 DOI: 10.1111/j.1365-294X.2012.05593.x  0.72
2012 Schielzeth H, Kempenaers B, Ellegren H, Forstmeier W. QTL linkage mapping of zebra finch beak color shows an oligogenic control of a sexually selected trait. Evolution; International Journal of Organic Evolution. 66: 18-30. PMID 22220861 DOI: 10.1111/j.1558-5646.2011.01431.x  0.72
2012 Schielzeth H, Forstmeier W, Kempenaers B, Ellegren H. QTL linkage mapping of wing length in zebra finch using genome-wide single nucleotide polymorphisms markers. Molecular Ecology. 21: 329-39. PMID 22111790 DOI: 10.1111/j.1365-294X.2011.05365.x  0.72
2011 Künstner A, Nabholz B, Ellegren H. Significant selective constraint at 4-fold degenerate sites in the avian genome and its consequence for detection of positive selection. Genome Biology and Evolution. 3: 1381-9. PMID 22042333 DOI: 10.1093/gbe/evr112  0.72
2011 Ellegren H. Emergence of male-biased genes on the chicken Z-chromosome: sex-chromosome contrasts between male and female heterogametic systems. Genome Research. 21: 2082-6. PMID 21868722 DOI: 10.1101/gr.119065.110  0.72
2011 Mugal CF, Ellegren H. Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content. Genome Biology. 12: R58. PMID 21696599 DOI: 10.1186/gb-2011-12-6-r58  0.72
2011 Nabholz B, Künstner A, Wang R, Jarvis ED, Ellegren H. Dynamic evolution of base composition: causes and consequences in avian phylogenomics. Molecular Biology and Evolution. 28: 2197-210. PMID 21393604 DOI: 10.1093/molbev/msr047  0.72
2011 Künstner A, Nabholz B, Ellegren H. Evolutionary constraint in flanking regions of avian genes. Molecular Biology and Evolution. 28: 2481-9. PMID 21393603 DOI: 10.1093/molbev/msr066  0.72
2011 Ellegren H. Sex-chromosome evolution: recent progress and the influence of male and female heterogamety. Nature Reviews. Genetics. 12: 157-66. PMID 21301475 DOI: 10.1038/nrg2948  0.72
2011 Rice AM, Rudh A, Ellegren H, Qvarnström A. A guide to the genomics of ecological speciation in natural animal populations. Ecology Letters. 14: 9-18. PMID 21070555 DOI: 10.1111/j.1461-0248.2010.01546.x  0.72
2011 Ellegren H. The singing genome. Heredity. 106: 533-4. PMID 20823906 DOI: 10.1038/hdy.2010.109  0.72
2011 KÜnstner A, Wolf JBW, BackstrÖm N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive paralle transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (Molecular Ecology (2010) 19:SUPPL.1 (266-276)) Molecular Ecology. 20: 2871. DOI: 10.1111/j.1365-294X.2011.05169.x  0.72
2011 KÜnstner A, Wolf JBW, BackstrÖm N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive paralle transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (Molecular Ecology (2010) 19:SUPPL.1 (266-276)) Molecular Ecology. 20: 2871. DOI: 10.1111/j.1365-294X.2011.05169.x  0.68
2010 Backström N, Palkopoulou E, Qvarnström A, Ellegren H. No evidence for Z-chromosome rearrangements between the pied flycatcher and the collared flycatcher as judged by gene-based comparative genetic maps. Molecular Ecology. 19: 3394-405. PMID 20670368 DOI: 10.1111/j.1365-294X.2010.04742.x  0.72
2010 Backström N, Lindell J, Zhang Y, Palkopoulou E, Qvarnström A, Saetre GP, Ellegren H. A high-density scan of the Z chromosome in Ficedula flycatchers reveals candidate loci for diversifying selection. Evolution; International Journal of Organic Evolution. 64: 3461-75. PMID 20629730 DOI: 10.1111/j.1558-5646.2010.01082.x  0.72
2010 Nabholz B, Jarvis ED, Ellegren H. Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny. Molecular Phylogenetics and Evolution. 57: 466-70. PMID 20601014 DOI: 10.1016/j.ympev.2010.06.009  0.72
2010 Nam K, Mugal C, Nabholz B, Schielzeth H, Wolf JB, Backström N, Künstner A, Balakrishnan CN, Heger A, Ponting CP, Clayton DF, Ellegren H. Molecular evolution of genes in avian genomes. Genome Biology. 11: R68. PMID 20573239 DOI: 10.1186/gb-2010-11-6-r68  0.72
2010 Forstmeier W, Ellegren H. Trisomy and triploidy are sources of embryo mortality in the zebra finch. Proceedings. Biological Sciences / the Royal Society. 277: 2655-60. PMID 20444723 DOI: 10.1098/rspb.2010.0394  0.72
2010 Qvarnström A, Rice AM, Ellegren H. Speciation in Ficedula flycatchers. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 1841-52. PMID 20439285 DOI: 10.1098/rstb.2009.0306  0.72
2010 Ellegren H. 'The Origin of Species--150 Years Later', June 2009, Fiskebäckskil, Sweden. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 1715. PMID 20439276 DOI: 10.1098/rstb.2010.0041  0.72
2010 Ellegren H. Evolutionary stasis: the stable chromosomes of birds. Trends in Ecology & Evolution. 25: 283-91. PMID 20363047 DOI: 10.1016/j.tree.2009.12.004  0.72
2010 Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, et al. The genome of a songbird. Nature. 464: 757-62. PMID 20360741 DOI: 10.1038/nature08819  0.72
2010 Backström N, Forstmeier W, Schielzeth H, Mellenius H, Nam K, Bolund E, Webster MT, Ost T, Schneider M, Kempenaers B, Ellegren H. The recombination landscape of the zebra finch Taeniopygia guttata genome. Genome Research. 20: 485-95. PMID 20357052 DOI: 10.1101/gr.101410.109  0.72
2010 Völker M, Backström N, Skinner BM, Langley EJ, Bunzey SK, Ellegren H, Griffin DK. Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution. Genome Research. 20: 503-11. PMID 20357050 DOI: 10.1101/gr.103663.109  0.72
2010 Mugal CF, Wolf JB, von Grünberg HH, Ellegren H. Conservation of neutral substitution rate and substitutional asymmetries in mammalian genes. Genome Biology and Evolution. 2: 19-28. PMID 20333222 DOI: 10.1093/gbe/evp056  0.72
2010 Künstner A, Wolf JB, Backström N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Molecular Ecology. 19: 266-76. PMID 20331785 DOI: 10.1111/j.1365-294X.2009.04487.x  0.72
2010 Tautz D, Ellegren H, Weigel D. Next generation molecular ecology. Molecular Ecology. 19: 1-3. PMID 20331765 DOI: 10.1111/j.1365-294X.2009.04489.x  0.72
2010 Mank JE, Nam K, Brunström B, Ellegren H. Ontogenetic complexity of sexual dimorphism and sex-specific selection. Molecular Biology and Evolution. 27: 1570-8. PMID 20142440 DOI: 10.1093/molbev/msq042  0.72
2010 Axelsson E, Albrechtsen A, van AP, Li L, Megens HJ, Vereijken AL, Crooijmans RP, Groenen MA, Ellegren H, Willerslev E, Nielsen R. Segregation distortion in chicken and the evolutionary consequences of female meiotic drive in birds. Heredity. 105: 290-8. PMID 20104236 DOI: 10.1038/hdy.2009.193  0.72
2010 Lira J, Linderholm A, Olaria C, Brandström Durling M, Gilbert MT, Ellegren H, Willerslev E, Lidén K, Arsuaga JL, Götherström A. Ancient DNA reveals traces of Iberian Neolithic and Bronze Age lineages in modern Iberian horses. Molecular Ecology. 19: 64-78. PMID 19943892 DOI: 10.1111/j.1365-294X.2009.04430.x  0.72
2010 Mank JE, Nam K, Ellegren H. Faster-Z evolution is predominantly due to genetic drift. Molecular Biology and Evolution. 27: 661-70. PMID 19926635 DOI: 10.1093/molbev/msp282  0.72
2010 Hansson B, Ljungqvist M, Dawson DA, Mueller JC, Olano-Marin J, Ellegren H, Nilsson JA. Avian genome evolution: insights from a linkage map of the blue tit (Cyanistes caeruleus). Heredity. 104: 67-78. PMID 19707235 DOI: 10.1038/hdy.2009.107  0.72
2010 Väli U, Dombrovski V, Treinys R, Bergmanis U, Daróczi SJ, Dravecky M, Ivanovski V, Lontkowski J, Maciorowski G, Meyburg Bu, Mizera T, Zeitz R, Ellegren H. Widespread hybridization between the Greater Spotted Eagle Aquila clanga and the Lesser Spotted Eagle Aquila pomarina (Aves: Accipitriformes) in Europe Biological Journal of the Linnean Society. 100: 725-736. DOI: 10.1111/j.1095-8312.2010.01455.x  0.72
2010 Väli U, Dombrovski V, Treinys R, Bergmanis U, Daróczi SJ, Dravecky M, Ivanovski V, Lontkowski J, Maciorowski G, Meyburg Bu, Mizera T, Zeitz R, Ellegren H. Widespread hybridization between the Greater Spotted Eagle Aquila clanga and the Lesser Spotted Eagle Aquila pomarina (Aves: Accipitriformes) in Europe Biological Journal of the Linnean Society. 100: 725-736. DOI: 10.1111/j.1095-8312.2010.01455.x  0.32
2010 Brøseth H, Flagstad Ø, Wärdig C, Johansson M, Ellegren H. Large-scale noninvasive genetic monitoring of wolverines using scats reveals density dependent adult survival Biological Conservation. 143: 113-120. DOI: 10.1016/j.biocon.2009.09.012  0.72
2010 Brøseth H, Flagstad Ø, Wärdig C, Johansson M, Ellegren H. Large-scale noninvasive genetic monitoring of wolverines using scats reveals density dependent adult survival Biological Conservation. 143: 113-120. DOI: 10.1016/j.biocon.2009.09.012  0.52
2009 Wolf JB, Künstner A, Nam K, Jakobsson M, Ellegren H. Nonlinear dynamics of nonsynonymous (dN) and synonymous (dS) substitution rates affects inference of selection. Genome Biology and Evolution. 1: 308-19. PMID 20333200 DOI: 10.1093/gbe/evp030  0.36
2009 Ellegren H. Sex determination: two copies for one cock. Current Biology : Cb. 19: R909-10. PMID 19825356 DOI: 10.1016/j.cub.2009.09.001  0.72
2009 Mank JE, Ellegren H. Sex bias in gene expression is not the same as dosage compensation. Heredity. 103: 434. PMID 19672283 DOI: 10.1038/hdy.2009.90  0.72
2009 Ellegren H. The different levels of genetic diversity in sex chromosomes and autosomes. Trends in Genetics : Tig. 25: 278-84. PMID 19481288 DOI: 10.1016/j.tig.2009.04.005  0.72
2009 Ellegren H. Is genetic diversity really higher in large populations? Journal of Biology. 8: 41. PMID 19435487 DOI: 10.1186/jbiol135  0.72
2009 Mank JE, Ellegren H. Are sex-biased genes more dispensable? Biology Letters. 5: 409-12. PMID 19433612 DOI: 10.1098/rsbl.2008.0732  0.72
2009 Hagenblad J, Olsson M, Parker HG, Ostrander EA, Ellegren H. Population genomics of the inbred Scandinavian wolf. Molecular Ecology. 18: 1341-51. PMID 19368642 DOI: 10.1111/j.1365-294X.2009.04120.x  0.72
2009 Ellegren H. A selection model of molecular evolution incorporating the effective population size. Evolution; International Journal of Organic Evolution. 63: 301-5. PMID 19215289 DOI: 10.1111/j.1558-5646.2008.00560.x  0.72
2009 Axelsson E, Ellegren H. Quantification of adaptive evolution of genes expressed in avian brain and the population size effect on the efficacy of selection. Molecular Biology and Evolution. 26: 1073-9. PMID 19188264 DOI: 10.1093/molbev/msp019  0.72
2009 Mank JE, Ellegren H. Sex-linkage of sexually antagonistic genes is predicted by female, but not male, effects in birds. Evolution; International Journal of Organic Evolution. 63: 1464-72. PMID 19154378 DOI: 10.1111/j.1558-5646.2009.00618.x  0.72
2009 Mank JE, Ellegren H. All dosage compensation is local: gene-by-gene regulation of sex-biased expression on the chicken Z chromosome. Heredity. 102: 312-20. PMID 18985062 DOI: 10.1038/hdy.2008.116  0.72
2009 Ellegren H. Genomic evidence for a large-Z effect. Proceedings. Biological Sciences / the Royal Society. 276: 361-6. PMID 18826931 DOI: 10.1098/rspb.2008.1135  0.72
2009 Hefti-Gautschi B, Pfunder M, Jenni L, Keller V, Ellegren H. Identification of conservation units in the European Mergus merganser based on nuclear and mitochondrial DNA markers Conservation Genetics. 10: 87-99. DOI: 10.1007/s10592-008-9528-y  0.72
2008 Ellegren H. Comparative genomics and the study of evolution by natural selection. Molecular Ecology. 17: 4586-96. PMID 19140982 DOI: 10.1111/j.1365-294X.2008.03954.x  0.72
2008 Berlin S, Qu L, Ellegren H. Adaptive evolution of gamete-recognition proteins in birds. Journal of Molecular Evolution. 67: 488-96. PMID 18850060 DOI: 10.1007/s00239-008-9165-6  0.72
2008 Brandström M, Bagshaw AT, Gemmell NJ, Ellegren H. The relationship between microsatellite polymorphism and recombination hot spots in the human genome. Molecular Biology and Evolution. 25: 2579-87. PMID 18794217 DOI: 10.1093/molbev/msn201  0.72
2008 Nam K, Ellegren H. The chicken (Gallus gallus) Z chromosome contains at least three nonlinear evolutionary strata. Genetics. 180: 1131-6. PMID 18791248 DOI: 10.1534/genetics.108.090324  0.72
2008 Berlin S, Qu L, Li X, Yang N, Ellegren H. Positive diversifying selection in avian Mx genes. Immunogenetics. 60: 689-97. PMID 18726592 DOI: 10.1007/s00251-008-0324-0  0.72
2008 Väli U, Einarsson A, Waits L, Ellegren H. To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations? Molecular Ecology. 17: 3808-17. PMID 18647238 DOI: 10.1111/j.1365-294X.2008.03876.x  0.72
2008 Ellegren H. Sex chromosomes: platypus genome suggests a recent origin for the human X. Current Biology : Cb. 18: R557-9. PMID 18606124 DOI: 10.1016/j.cub.2008.05.027  0.72
2008 Backström N, Karaiskou N, Leder EH, Gustafsson L, Primmer CR, Qvarnström A, Ellegren H. A gene-based genetic linkage map of the collared flycatcher (Ficedula albicollis) reveals extensive synteny and gene-order conservation during 100 million years of avian evolution. Genetics. 179: 1479-95. PMID 18562642 DOI: 10.1534/genetics.108.088195  0.72
2008 Axelsson E, Hultin-Rosenberg L, Brandström M, Zwahlén M, Clayton DF, Ellegren H. Natural selection in avian protein-coding genes expressed in brain. Molecular Ecology. 17: 3008-17. PMID 18482257 DOI: 10.1111/j.1365-294X.2008.03795.x  0.72
2008 Mank JE, Hultin-Rosenberg L, Webster MT, Ellegren H. The unique genomic properties of sex-biased genes: insights from avian microarray data. Bmc Genomics. 9: 148. PMID 18377635 DOI: 10.1186/1471-2164-9-148  0.72
2008 Brandström M, Ellegren H. Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias. Genome Research. 18: 881-7. PMID 18356314 DOI: 10.1101/gr.075242.107  0.72
2008 Ellegren H, Sheldon BC. Genetic basis of fitness differences in natural populations. Nature. 452: 169-75. PMID 18337813 DOI: 10.1038/nature06737  0.72
2008 Ellegren H. Sequencing goes 454 and takes large-scale genomics into the wild. Molecular Ecology. 17: 1629-31. PMID 18284566 DOI: 10.1111/j.1365-294X.2008.03699.x  0.72
2008 Väli U, Brandström M, Johansson M, Ellegren H. Insertion-deletion polymorphisms (indels) as genetic markers in natural populations. Bmc Genetics. 9: 8. PMID 18211670 DOI: 10.1186/1471-2156-9-8  0.72
2008 Mank JE, Hultin-Rosenberg L, Zwahlen M, Ellegren H. Pleiotropic constraint hampers the resolution of sexual antagonism in vertebrate gene expression. The American Naturalist. 171: 35-43. PMID 18171149 DOI: 10.1086/523954  0.72
2008 Backström N, Fagerberg S, Ellegren H. Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome. Molecular Ecology. 17: 964-80. PMID 17927703 DOI: 10.1111/j.1365-294X.2007.03551.x  0.72
2008 Sundqvist AK, Ellegren H, Vilà C. Wolf or dog? Genetic identification of predators from saliva collected around bite wounds on prey Conservation Genetics. 9: 1275-1279. DOI: 10.1007/s10592-007-9454-4  0.72
2007 Mank JE, Hultin-Rosenberg L, Axelsson E, Ellegren H. Rapid evolution of female-biased, but not male-biased, genes expressed in the avian brain. Molecular Biology and Evolution. 24: 2698-706. PMID 17893399 DOI: 10.1093/molbev/msm208  0.72
2007 Ellegren H, Hultin-Rosenberg L, Brunström B, Dencker L, Kultima K, Scholz B. Faced with inequality: chicken do not have a general dosage compensation of sex-linked genes. Bmc Biology. 5: 40. PMID 17883843 DOI: 10.1186/1741-7007-5-40  0.72
2007 Engen S, Ringsby TH, Saether BE, Lande R, Jensen H, Lillegård M, Ellegren H. Effective size of fluctuating populations with two sexes and overlapping generations. Evolution; International Journal of Organic Evolution. 61: 1873-85. PMID 17683430 DOI: 10.1111/j.1558-5646.2007.00155.x  0.72
2007 Ellegren H, Parsch J. The evolution of sex-biased genes and sex-biased gene expression. Nature Reviews. Genetics. 8: 689-98. PMID 17680007 DOI: 10.1038/nrg2167  0.72
2007 Ellegren H. Molecular evolutionary genomics of birds. Cytogenetic and Genome Research. 117: 120-30. PMID 17675852 DOI: 10.1159/000103172  0.72
2007 Ellegren H. Evolutionary genomics: a dinosaur's view of genome-size evolution. Current Biology : Cb. 17: R470-2. PMID 17580079 DOI: 10.1016/j.cub.2007.04.023  0.72
2007 Mank JE, Ellegren H. Parallel divergence and degradation of the avian W sex chromosome. Trends in Ecology & Evolution. 22: 389-91. PMID 17573147 DOI: 10.1016/j.tree.2007.05.003  0.72
2007 Brandström M, Ellegren H. The genomic landscape of short insertion and deletion polymorphisms in the chicken (Gallus gallus) Genome: a high frequency of deletions in tandem duplicates. Genetics. 176: 1691-701. PMID 17507681 DOI: 10.1534/genetics.107.070805  0.72
2007 Mank JE, Axelsson E, Ellegren H. Fast-X on the Z: rapid evolution of sex-linked genes in birds. Genome Research. 17: 618-24. PMID 17416747 DOI: 10.1101/gr.6031907  0.72
2007 Ellegren H. Characteristics, causes and evolutionary consequences of male-biased mutation. Proceedings. Biological Sciences / the Royal Society. 274: 1-10. PMID 17134994 DOI: 10.1098/rspb.2006.3720  0.72
2007 Kaiser VB, van Tuinen M, Ellegren H. Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds. Molecular Biology and Evolution. 24: 338-47. PMID 17077154 DOI: 10.1093/molbev/msl164  0.72
2007 Hedmark E, Ellegren H. DNA-based monitoring of two newly founded Scandinavian wolverine populations Conservation Genetics. 8: 843-852. DOI: 10.1007/s10592-006-9231-9  0.72
2007 Hedmark E, Persson J, Segerström P, Landa A, Ellegren H. Paternity and mating system in wolverines Gulo gulo Wildlife Biology. 13: 13-30.  0.72
2006 Backström N, Qvarnström A, Gustafsson L, Ellegren H. Levels of linkage disequilibrium in a wild bird population. Biology Letters. 2: 435-8. PMID 17148424 DOI: 10.1098/rsbl.2006.0507  0.72
2006 Hailer F, Helander B, Folkestad AO, Ganusevich SA, Garstad S, Hauff P, Koren C, Nygård T, Volke V, Vilà C, Ellegren H. Bottlenecked but long-lived: high genetic diversity retained in white-tailed eagles upon recovery from population decline. Biology Letters. 2: 316-9. PMID 17148392 DOI: 10.1098/rsbl.2006.0453  0.72
2006 Kaiser VB, Ellegren H. Nonrandom distribution of genes with sex-biased expression in the chicken genome. Evolution; International Journal of Organic Evolution. 60: 1945-51. PMID 17089978 DOI: 10.1554/06-233.1  0.72
2006 Backström N, Brandström M, Gustafsson L, Qvarnström A, Cheng H, Ellegren H. Genetic mapping in a natural population of collared flycatchers (Ficedula albicollis): conserved synteny but gene order rearrangements on the avian Z chromosome. Genetics. 174: 377-86. PMID 16783008 DOI: 10.1534/genetics.106.058917  0.72
2006 Webster MT, Axelsson E, Ellegren H. Strong regional biases in nucleotide substitution in the chicken genome. Molecular Biology and Evolution. 23: 1203-16. PMID 16551647 DOI: 10.1093/molbev/msk008  0.72
2006 Berlin S, Brandström M, Backström N, Axelsson E, Smith NG, Ellegren H. Substitution rate heterogeneity and the male mutation bias. Journal of Molecular Evolution. 62: 226-33. PMID 16474985 DOI: 10.1007/s00239-005-0103-6  0.72
2006 Berlin S, Ellegren H. Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds. Journal of Molecular Evolution. 62: 66-72. PMID 16320115 DOI: 10.1007/s00239-005-0067-6  0.72
2006 Sundqvist AK, Björnerfeldt S, Leonard JA, Hailer F, Hedhammar A, Ellegren H, Vilà C. Unequal contribution of sexes in the origin of dog breeds. Genetics. 172: 1121-8. PMID 16219789 DOI: 10.1534/genetics.105.042358  0.72
2006 Seddon JM, Sundqvist AK, Björnerfeldt S, Ellegren H. Genetic identification of immigrants to the Scandinavian wolf population Conservation Genetics. 7: 225-230. DOI: 10.1007/s10592-005-9001-0  0.72
2006 Hedmark E, Ellegren H. A test of the multiplex pre-amplification approach in microsatellite genotyping of wolverine faecal DNA Conservation Genetics. 7: 289-293. DOI: 10.1007/s10592-005-9000-1  0.72
2005 Ellegren H. The avian genome uncovered. Trends in Ecology & Evolution. 20: 180-6. PMID 16701366 DOI: 10.1016/j.tree.2005.01.015  0.72
2005 Ellegren H. Genomics: the dog has its day. Nature. 438: 745-6. PMID 16340996 DOI: 10.1038/438745a  0.72
2005 Ellegren H. Evolution: Natural selection in the evolution of humans and chimps Current Biology. 15: R919-R922. PMID 16303548 DOI: 10.1016/j.cub.2005.10.060  0.72
2005 Götherström A, Anderung C, Hellborg L, Elburg R, Smith C, Bradley DG, Ellegren H. Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe Proceedings of the Royal Society B: Biological Sciences. 272: 2345-2350. PMID 16243693 DOI: 10.1098/rspb.2005.3243  0.72
2005 Berggren KT, Ellegren H, Hewitt GM, Seddon JM. Understanding the phylogeographic patterns of European hedgehogs, Erinaceus concolor and E. europaeus using the MHC. Heredity. 95: 84-90. PMID 16077505 DOI: 10.1038/sj.hdy.6800694  0.72
2005 Backström N, Ceplitis H, Berlin S, Ellegren H. Gene conversion drives the evolution of HINTW, an ampliconic gene on the female-specific avian W chromosome Molecular Biology and Evolution. 22: 1992-1999. PMID 15972846 DOI: 10.1093/molbev/msi198  0.72
2005 Anderung C, Bouwman A, Persson P, Carretero JM, Ortega AI, Elburg R, Smith C, Arsuaga JL, Ellegren H, Götherström A. Prehistoric contacts over the Straits of Gibraltar indicated by genetic analysis of Iberian Bronze Age cattle Proceedings of the National Academy of Sciences of the United States of America. 102: 8431-8435. PMID 15941827 DOI: 10.1073/pnas.0503396102  0.72
2005 Vilà C, Seddon J, Ellegren H. Genes of domestic mammals augmented by backcrossing with wild ancestors. Trends in Genetics : Tig. 21: 214-8. PMID 15797616 DOI: 10.1016/j.tig.2005.02.004  0.72
2005 Webster MT, Smith NG, Hultin-Rosenberg L, Arndt PF, Ellegren H. Male-driven biased gene conversion governs the evolution of base composition in human alu repeats. Molecular Biology and Evolution. 22: 1468-74. PMID 15772377 DOI: 10.1093/molbev/msi136  0.72
2005 Hedmark E, Ellegren H. Microsatellite genotyping of DNA isolated from claws left on tanned carnivore hides International Journal of Legal Medicine. 119: 370-373. PMID 15690184 DOI: 10.1007/s00414-005-0521-4  0.72
2005 Seddon JM, Parker HG, Ostrander EA, Ellegren H. SNPs in ecological and conservation studies: A test in the Scandinavian wolf population Molecular Ecology. 14: 503-511. PMID 15660941 DOI: 10.1111/j.1365-294X.2005.02435.x  0.72
2005 Axelsson E, Webster MT, Smith NG, Burt DW, Ellegren H. Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. Genome Research. 15: 120-5. PMID 15590944 DOI: 10.1101/gr.3021305  0.72
2004 Wong GK, Liu B, Wang J, Zhang Y, Yang X, Zhang Z, Meng Q, Zhou J, Li D, Zhang J, Ni P, Li S, Ran L, Li H, Zhang J, ... ... Ellegren H, et al. A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature. 432: 717-22. PMID 15592405 DOI: 10.1038/nature03156  0.68
2004 . Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature. 432: 695-716. PMID 15592404 DOI: 10.1038/nature03154  0.72
2004 Seddon JM, Ellegren H. A temporal analysis shows major histocompatibility complex loci in the Scandinavian wolf population are consistent with neutral evolution Proceedings of the Royal Society B: Biological Sciences. 271: 2283-2291. PMID 15539354 DOI: 10.1098/rspb.2004.2869  0.72
2004 Berlin S, Ellegren H. Chicken W: A genetically uniform chromosome in a highly variable genome Proceedings of the National Academy of Sciences of the United States of America. 101: 15967-15969. PMID 15520382 DOI: 10.1073/pnas.0405126101  0.72
2004 Smith NG, Brandström M, Ellegren H. Evidence for turnover of functional noncoding DNA in mammalian genome evolution. Genomics. 84: 806-13. PMID 15475259 DOI: 10.1016/j.ygeno.2004.07.012  0.72
2004 Saetre P, Lindberg J, Leonard JA, Olsson K, Pettersson U, Ellegren H, Bergström TF, Vilà C, Jazin E. From wild wolf to domestic dog: gene expression changes in the brain. Brain Research. Molecular Brain Research. 126: 198-206. PMID 15249144 DOI: 10.1016/j.molbrainres.2004.05.003  0.72
2004 Webster MT, Smith NG, Lercher MJ, Ellegren H. Gene expression, synteny, and local similarity in human noncoding mutation rates. Molecular Biology and Evolution. 21: 1820-30. PMID 15175414 DOI: 10.1093/molbev/msh181  0.72
2004 Sundström H, Webster MT, Ellegren H. Reduced variation on the chicken Z chromosome Genetics. 167: 377-385. PMID 15166162 DOI: 10.1534/genetics.167.1.377  0.72
2004 Handley LJL, Ceplitis H, Ellegren H. Evolutionary strata on the chicken Z chromosome: Implications for sex chromosome evolution Genetics. 167: 367-376. PMID 15166161 DOI: 10.1534/genetics.167.1.367  0.72
2004 Ellegren H. Microsatellites: Simple sequences with complex evolution Nature Reviews Genetics. 5: 435-445. PMID 15153996 DOI: 10.1038/nrg1348  0.72
2004 Axelsson E, Smith NG, Sundström H, Berlin S, Ellegren H. Male-biased mutation rate and divergence in autosomal, z-linked and w-linked introns of chicken and Turkey. Molecular Biology and Evolution. 21: 1538-47. PMID 15140948 DOI: 10.1093/molbev/msh157  0.72
2004 Berlin S, Smith NG, Ellegren H. Do avian mitochondria recombine? Journal of Molecular Evolution. 58: 163-7. PMID 15042336 DOI: 10.1007/s00239-003-2537-z  0.72
2004 Lindgren G, Backström N, Swinburne J, Hellborg L, Einarsson A, Sandberg K, Cothran G, Vilà C, Binns M, Ellegren H. Limited number of patrilines in horse domestication. Nature Genetics. 36: 335-6. PMID 15034578 DOI: 10.1038/ng1326  0.72
2004 Brohede J, Møller AP, Ellegren H. Individual variation in microsatellite mutation rate in barn swallows Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 545: 73-80. PMID 14698418 DOI: 10.1016/j.mrfmmm.2003.09.012  0.72
2004 Hellborg L, Ellegren H. Low Levels of Nucleotide Diversity in Mammalian Y Chromosomes Molecular Biology and Evolution. 21: 158-163. PMID 14595096 DOI: 10.1093/molbev/msh008  0.72
2004 Brohede J, Arnheim N, Ellegren H. Single-Molecule Analysis of the Hypermutable Tetranucleotide Repeat Locus D21S1245 Through Sperm Genotyping: A Heterogeneous Pattern of Mutation but no Clear Male Age Effect Molecular Biology and Evolution. 21: 58-64. PMID 14530459 DOI: 10.1093/molbev/msg242  0.72
2004 Ceplitis H, Ellegren H. Adaptive Molecular Evolution of HINTW, a Female-Specific Gene in Birds Molecular Biology and Evolution. 21: 249-254. PMID 12949135 DOI: 10.1093/molbev/msg239  0.72
2004 Flagstad Ø, Hedmark E, Landa A, Brøseth H, Persson J, Andersen R, Segerström P, Ellegren H. Colonization history and noninvasive monitoring of a reestablished wolverine population Conservation Biology. 18: 676-688. DOI: 10.1111/j.1523-1739.2004.00034.x  0.72
2004 Jensen H, Sæether BE, Ringsby TH, Tufto J, Griffith SC, Ellegren H. Lifetime reproductive success in relation to morphology in the house sparrow Passer domesticus Journal of Animal Ecology. 73: 599-611. DOI: 10.1111/j.0021-8790.2004.00837.x  0.72
2004 Hedmark E, Flagstad Ø, Segerström P, Persson J, Landa A, Ellegren H. DNA-based individual and sex identification from wolverine (Gulo gulo) faeces and urine Conservation Genetics. 5: 405-410. DOI: 10.1023/B:COGE.0000031224.88778.f5  0.72
2003 Jensen H, Saether BE, Ringsby TH, Tufto J, Griffith SC, Ellegren H. Sexual variation in heritability and genetic correlations of morphological traits in house sparrow (Passer domesticus). Journal of Evolutionary Biology. 16: 1296-307. PMID 14640421 DOI: 10.1046/j.1420-9101.2003.00614.x  0.72
2003 Bartosch-Härlid A, Berlin S, Smith NG, Møller AP, Ellegren H. Life history and the male mutation bias. Evolution; International Journal of Organic Evolution. 57: 2398-406. PMID 14628927  0.72
2003 Rueness EK, Jorde PE, Hellborg L, Stenseth NC, Ellegren H, Jakobsen KS. Cryptic population structure in a large, mobile mammalian predator: The Scandinavian lynx Molecular Ecology. 12: 2623-2633. PMID 12969466 DOI: 10.1046/j.1365-294X.2003.01952.x  0.72
2003 Rueness EK, Stenseth NC, O'Donoghue M, Boutin S, Ellegren H, Jakobsen KS. Ecological and genetic spatial structuring in the Canadian lynx. Nature. 425: 69-72. PMID 12955141 DOI: 10.1038/nature01942  0.72
2003 Flagstad Ø, Walker CW, Vilà C, Sundqvist AK, Fernholm B, Hufthammer AK, Wiig Ø, Koyola I, Ellegren H. Two centuries of the Scandinavian wolf population: patterns of genetic variability and migration during an era of dramatic decline. Molecular Ecology. 12: 869-80. PMID 12753208 DOI: 10.1046/j.1365-294X.2003.01784.x  0.72
2003 Sundström H, Webster MT, Ellegren H. Is the rate of insertion and deletion mutation male biased?: Molecular evolutionary analysis of avian and primate sex chromosome sequences Genetics. 164: 259-268. PMID 12750337  0.72
2003 Ellegren H, Fridolfsson AK. Sex-specific mutation rates in salmonid fish Journal of Molecular Evolution. 56: 458-463. PMID 12664165 DOI: 10.1007/s00239-002-2416-z  0.72
2003 Webster MT, Smith NG, Ellegren H. Compositional evolution of noncoding DNA in the human and chimpanzee genomes. Molecular Biology and Evolution. 20: 278-86. PMID 12598695 DOI: 10.1093/molbev/msg037  0.72
2003 Vilà C, Sundqvist AK, Flagstad Ø, Seddon J, Björnerfeldt S, Kojola I, Casulli A, Sand H, Wabakken P, Ellegren H. Rescue of a severely bottlenecked wolf (Canis lupus) population by a single immigrant. Proceedings. Biological Sciences / the Royal Society. 270: 91-7. PMID 12590776 DOI: 10.1098/rspb.2002.2184  0.72
2003 Ellegren H. Levels of polymorphism on the sex-limited chromosome: A clue to Y from W? Bioessays. 25: 163-167. PMID 12539242 DOI: 10.1002/bies.10228  0.72
2003 Vilà C, Walker C, Sundqvist AK, Flagstad Ø, Andersone Z, Casulli A, Kojola I, Valdmann H, Halverson J, Ellegren H. Combined use of maternal, paternal and bi-parental genetic markers for the identification of wolf-dog hybrids. Heredity. 90: 17-24. PMID 12522421 DOI: 10.1038/sj.hdy.6800175  0.72
2003 Smith NG, Webster MT, Ellegren H. A low rate of simultaneous double-nucleotide mutations in primates. Molecular Biology and Evolution. 20: 47-53. PMID 12519905 DOI: 10.1093/molbev/msg003  0.72
2003 Hellborg L, Ellegren H. Y chromosome conserved anchored tagged sequences (YCATS) for the analysis of mammalian male-specific DNA Molecular Ecology. 12: 283-291. PMID 12492896 DOI: 10.1046/j.1365-294X.2003.01702.x  0.72
2003 Ellegren H, Smith NGC, Webster MT. Mutation rate variation in the mammalian genome Current Opinion in Genetics and Development. 13: 562-568. DOI: 10.1016/j.gde.2003.10.008  0.72
2002 Hurst LD, Ellegren H. Mystery of the mutagenic male Nature. 420: 365-366. PMID 12459764 DOI: 10.1038/420365a  0.72
2002 Ellegren H. Mismatch repair and mutational bias in microsatellite DNA Trends in Genetics. 18: 552. PMID 12414181 DOI: 10.1016/S0168-9525(02)02804-4  0.72
2002 Seddon JM, Ellegren H. MHC class II genes in European wolves: A comparison with dogs Immunogenetics. 54: 490-500. PMID 12389097 DOI: 10.1007/s00251-002-0489-x  0.72
2002 Smith NG, Webster MT, Ellegren H. Deterministic mutation rate variation in the human genome. Genome Research. 12: 1350-6. PMID 12213772 DOI: 10.1101/gr.220502  0.72
2002 Webster MT, Smith NG, Ellegren H. Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments. Proceedings of the National Academy of Sciences of the United States of America. 99: 8748-53. PMID 12070344 DOI: 10.1073/pnas.122067599  0.72
2002 Ellegren H. Human mutation - Blame (mostly) men Nature Genetics. 31: 9-10. PMID 11984557 DOI: 10.1038/ng0502-9  0.72
2002 Brohede J, Primmer CR, Møller A, Ellegren H. Heterogeneity in the rate and pattern of germline mutation at individual microsatellite loci. Nucleic Acids Research. 30: 1997-2003. PMID 11972338  0.72
2002 Ellegren H. Dosage compensation: Do birds do it as well? Trends in Genetics. 18: 25-28. PMID 11750697 DOI: 10.1016/S0168-9525(01)02553-7  0.72
2002 Hipkiss T, Hörnfeldt B, Lundmark Å, Norbäck M, Ellegren H. Sex ratio and age structure of nomadic Tengmalm's owls: A molecular approach Journal of Avian Biology. 33: 107-110. DOI: 10.1034/j.1600-048X.2002.330118.x  0.72
2002 Hellborg L, Walker CW, Rueness EK, Stacy JE, Kojola I, Valdmann H, Vilà C, Zimmermann B, Jakobsen KS, Ellegren H. Differentiation and levels of genetic variation in northern European lynx (Lynx lynx) populations revealed by microsatellites and mitochondrial DNA analysis Conservation Genetics. 3: 97-111. DOI: 10.1023/A:1015217723287  0.72
2002 Ellegren H. It took many mares to form the domestic horse Trends in Genetics. 18: 500-501.  0.72
2002 Ellegren H. Microsatellite evolution: A battle between replication slippage and point mutation Trends in Genetics. 18: 70.  0.72
2001 Montell H, Fridolfsson AK, Ellegren H. Contrasting levels of nucleotide diversity on the avian Z and W sex chromosomes Molecular Biology and Evolution. 18: 2010-2016. PMID 11606697  0.72
2001 Sundqvist AK, Ellegren H, Olivier M, Vilà C. Y chromosome haplotyping in Scandinavian wolves (Canis lupus) based on microsatellite markers. Molecular Ecology. 10: 1959-66. PMID 11555240 DOI: 10.1046/j.1365-294X.2001.01326.x  0.72
2001 Berlin S, Ellegren H. Clonal inheritance of avian mitochondrial DNA Nature. 413: 37-38. PMID 11544517 DOI: 10.1038/35092623  0.72
2001 Hedrick P, Fredrickson R, Ellegren H. Evaluation of d2, a microsatellite measure of inbreeding and outbreeding, in wolves with a known pedigree Evolution. 55: 1256-1260. PMID 11475062  0.72
2001 Lindgren G, Swinburne JE, Breen M, Mariat D, Sandberg K, Guérin G, Ellegren H, Binns MM. Physical anchorage and orientation of equine linkage groups by FISH mapping BAC clones containing microsatellite markers Animal Genetics. 32: 37-39. PMID 11419343 DOI: 10.1046/j.1365-2052.2001.00715.x  0.72
2001 Ellegren H, Carmichael A. Multiple and independent cessation of recombination between avian sex chromosomes Genetics. 158: 325-331. PMID 11333240  0.72
2001 Lister AM, Vilà C, Ellegren H, Götherstörm A, Leonard JA, Wayne RK. Tales from the DNA of domestic horses (multiple letters) Science. 292: 218-219. PMID 11305309 DOI: 10.1126/science.292.5515.218  0.72
2001 Saetre GP, Borge T, Lindell J, Moum T, Primmer CR, Sheldon BC, Haavie J, Johnsen A, Ellegren H. Speciation, introgressive hybridization and nonlinear rate of molecular evolution in flycatchers. Molecular Ecology. 10: 737-49. PMID 11298984 DOI: 10.1046/j.1365-294X.2001.01208.x  0.72
2001 Lindgren G, Breen M, Godard S, Bowling A, Murray J, Scavone M, Skow L, Sandberg K, Guérin G, Binns M, Ellegren H. Mapping of 13 horse genes by fluorescence in-situ hybridization (FISH) and somatic cell hybrid analysis. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 9: 53-9. PMID 11272792 DOI: 10.1023/A:1026743700819  0.72
2001 Ellegren H. Hens, cocks and avian sex determination Embo Reports. 2: 192-196. PMID 11266359 DOI: 10.1093/embo-reports/kve050  0.72
2001 Walker CW, Vilà C, Landa A, Lindén M, Ellegren H. Genetic variation and population structure in Scandinavian wolverine (Gulo gulo) populations. Molecular Ecology. 10: 53-63. PMID 11251787 DOI: 10.1046/j.1365-294X.2001.01184.x  0.72
2001 Vilà C, Leonard JA, Gotherstrom A, Marklund S, Sandberg K, Liden K, Wayne RK, Ellegren H. Widespread origins of domestic horse lineages. Science (New York, N.Y.). 291: 474-7. PMID 11161199 DOI: 10.1126/science.291.5503.474  0.72
2000 Ellegren H. Microsatellite mutations in the germline: Implications for evolutionary inference Trends in Genetics. 16: 551-558. PMID 11102705 DOI: 10.1016/S0168-9525(00)02139-9  0.72
1998 Knott SA, Marklund L, Haley CS, Andersson K, Davies W, Ellegren H, Fredholm M, Hansson I, Hoyheim B, Lundström K, Moller M, Andersson L. Multiple marker mapping of quantitative trait loci in a cross between outbred wild boar and large white pigs. Genetics. 149: 1069-80. PMID 9611214  0.68
1998 Hasler-Rapacz J, Ellegren H, Fridolfsson AK, Kirkpatrick B, Kirk S, Andersson L, Rapacz J. Identification of a mutation in the low density lipoprotein receptor gene associated with recessive familial hypercholesterolemia in swine. American Journal of Medical Genetics. 76: 379-86. PMID 9556295 DOI: 10.1002/(SICI)1096-8628(19980413)76:5<379::AID-AJMG3>3.0.CO;2-I  0.68
1997 Fridolfsson AK, Hori T, Winterø AK, Fredholm M, Yerle M, Robic A, Andersson L, Ellegren H. Expansion of the pig comparative map by expressed sequence tags (EST) mapping. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 8: 907-12. PMID 9383283 DOI: 10.1007/s003359900609  0.72
1996 Ellegren H, Mikko S, Wallin K, Andersson L. Limited polymorphism at major histocompatibility complex (MHC) loci in the Swedish moose A. alces. Molecular Ecology. 5: 3-9. PMID 9147694  0.68
1996 Marklund L, Johansson Moller M, Høyheim B, Davies W, Fredholm M, Juneja RK, Mariani P, Coppieters W, Ellegren H, Andersson L. A comprehensive linkage map of the pig based on a wild pig-Large White intercross. Animal Genetics. 27: 255-69. PMID 8856923  0.68
1996 Mariani P, Moller MJ, Høyheim B, Marklund L, Davies W, Ellegren H, Andersson L. The extension coat color locus and the loci for blood group O and tyrosine aminotransferase are on pig chromosome 6. The Journal of Heredity. 87: 272-6. PMID 8776875  0.68
1995 Larsen NJ, Ellegren H, Nielsen PB, Andersson L. Genetic variation at the growth hormone locus in a wild pig intercross; test of association to phenotypic traits and linkage to the blood group D locus. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 91: 1074-7. PMID 24169998 DOI: 10.1007/BF00223921  0.72
1995 Johansson M, Ellegren H, Andersson L. Comparative mapping reveals extensive linkage conservation--but with gene order rearrangements--between the pig and the human genomes. Genomics. 25: 682-90. PMID 7759103  0.68
1994 Chowdhary BP, Ellegren H, Johansson M, Andersson L, Gustavsson I. In situ hybridization mapping of the growth hormone receptor (GHR) gene assigns a linkage group (C9, FS, GHR, and S0105) to chromosome 16 in pigs. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 5: 160-2. PMID 8199404  0.68
1994 Marklund S, Ellegren H, Eriksson S, Sandberg K, Andersson L. Parentage testing and linkage analysis in the horse using a set of highly polymorphic microsatellites. Animal Genetics. 25: 19-23. PMID 8161016  0.68
1994 Andersson L, Haley CS, Ellegren H, Knott SA, Johansson M, Andersson K, Andersson-Eklund L, Edfors-Lilja I, Fredholm M, Hansson I. Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science (New York, N.Y.). 263: 1771-4. PMID 8134840  0.68
1994 Ellegren H, Johansson M, Hartman G, Andersson L. DNA fingerprinting with the human 33.6 minisatellite probe identifies sex in beavers Castor fiber. Molecular Ecology. 3: 273-4. PMID 8061881  0.68
1994 Ellegren H, Chowdhary BP, Johansson M, Marklund L, Fredholm M, Gustavsson I, Andersson L. A primary linkage map of the porcine genome reveals a low rate of genetic recombination. Genetics. 137: 1089-100. PMID 7982563  0.68
1994 Ellegren H, Chowdhary B, Johansson M, Andersson L. Integrating the porcine physical and linkage map using cosmid-derived markers. Animal Genetics. 25: 155-64. PMID 7943949  0.68
1994 Johansson M, Ellegren H, Marklund L, Coppieters W, Andersson L. Linkage maps of porcine chromosomes 3, 6, and 9 based on 31 polymorphic markers. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 5: 785-90. PMID 7894160  0.68
1994 Ellegren H, Chowdhary BP, Fredholm M, Høyheim B, Johansson M, Bräuner Nielsen PB, Thomsen PD, Andersson L. A physically anchored linkage map of pig chromosome 1 uncovers sex- and position-specific recombination rates. Genomics. 24: 342-50. PMID 7698757  0.68
1993 Lagercrantz U, Ellegren H, Andersson L. The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Research. 21: 1111-5. PMID 8464696  0.68
1993 Ellegren H, Hartman G, Johansson M, Andersson L. Major histocompatibility complex monomorphism and low levels of DNA fingerprinting variability in a reintroduced and rapidly expanding population of beavers. Proceedings of the National Academy of Sciences of the United States of America. 90: 8150-3. PMID 8367476  0.68
1993 Edfors-Lilja I, Ellegren H, Winterø AK, Ruohonen-Lehto M, Fredholm M, Gustafsson U, Juneja RK, Andersson L. A large linkage group on pig chromosome 7 including the MHC class I, class II (DQB), and class III (TNFB) genes. Immunogenetics. 38: 363-6. PMID 8344723  0.68
1993 Ellegren H, Fredholm M, Edfors-Lilja I, Winterø AK, Andersson L. Conserved synteny between pig chromosome 8 and human chromosome 4 but rearranged and distorted linkage maps. Genomics. 17: 599-603. PMID 8244376 DOI: 10.1006/geno.1993.1378  0.68
1993 Ellegren H, Davies CJ, Andersson L. Strong association between polymorphisms in an intronic microsatellite and in the coding sequence of the BoLA-DRB3 gene: implications for microsatellite stability and PCR-based DRB3 typing. Animal Genetics. 24: 269-75. PMID 8239071  0.68
1993 Johansson M, Chowdhary B, Gu F, Ellegren H, Gustavsson I, Andersson L. Genetic analysis of the gene for porcine submaxillary gland mucin: physical assignment of the MUC and interferon gamma genes to chromosome 5. The Journal of Heredity. 84: 259-62. PMID 8101856  0.68
1993 Chowdhary BP, Johansson M, Chaudhary R, Ellegren H, Gu F, Andersson L, Gustavsson I. In situ hybridization mapping and restriction fragment length polymorphism analysis of the porcine albumin (ALB) and transferrin (TF) genes. Animal Genetics. 24: 85-90. PMID 8101068  0.68
1992 Johansson M, Ellegren H, Andersson L. Cloning and characterization of highly polymorphic porcine microsatellites. The Journal of Heredity. 83: 196-8. PMID 1624765  0.68
1992 Ellegren H, Andersson L, Johansson M, Sandberg K. DNA fingerprinting in horses using a simple (TG)n probe and its application to population comparisons. Animal Genetics. 23: 1-9. PMID 1570891  0.68
1992 Ellegren H, Johansson M, Sandberg K, Andersson L. Cloning of highly polymorphic microsatellites in the horse. Animal Genetics. 23: 133-42. PMID 1443772  0.68
1992 Johansson M, Ellegren H, Marklund L, Gustavsson U, Ringmar-Cederberg E, Andersson K, Edfors-Lilja I, Andersson L. The gene for dominant white color in the pig is closely linked to ALB and PDGRFRA on chromosome 8. Genomics. 14: 965-9. PMID 1362182  0.68
1992 Mariani P, Johansson M, Ellegren H, Harbitz I, Juneja RK, Andersson L. Multiple restriction fragment length polymorphisms in the porcine calcium release channel gene (CRC): assignment to the halothane (HAL) linkage group. Animal Genetics. 23: 257-62. PMID 1354420  0.68
1991 Mariani P, Johansson M, Ellegren H, Andersson L. TaqI and PvuII restriction fragment length polymorphisms at the porcine plasminogen activator, urokinase, locus (PLAU). Animal Genetics. 22: 447. PMID 1685640  0.68
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