John K. Kelly, Ph.D. - Publications

University of Kansas University of Kansas, Lawrence, KS, United States 
quantitative and population genetics, plant mating system evolution

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Troth A, Puzey JR, Kim RS, Willis JH, Kelly JK. Selective trade-offs maintain alleles underpinning complex trait variation in plants. Science (New York, N.Y.). 361: 475-478. PMID 30072534 DOI: 10.1126/Science.Aat5760  1
2017 Koseva B, Crawford DJ, Brown KE, Mort ME, Kelly JK. The genetic breakdown of sporophytic self-incompatibility in Tolpis coronopifolia (Asteraceae). The New Phytologist. PMID 28892151 DOI: 10.1111/Nph.14759  0.72
2016 Puzey JR, Willis JH, Kelly JK. Population structure and local selection yield high genomic variation in Mimulus guttatus. Molecular Ecology. PMID 27859786 DOI: 10.1111/Mec.13922  1
2016 Lee YW, Fishman L, Kelly JK, Willis JH. Fitness Variation Is Generated by a Segregating Inversion in Yellow Monkeyflower (Mimulus guttatus). Genetics. PMID 26868767 DOI: 10.1534/Genetics.115.183566  1
2015 Monnahan PJ, Kelly JK. Naturally segregating loci exhibit epistasis for fitness. Biology Letters. 11. PMID 26246336 DOI: 10.1098/Rsbl.2015.0498  1
2015 Monnahan PJ, Colicchio J, Kelly JK. A genomic selection component analysis characterizes migration-selection balance. Evolution; International Journal of Organic Evolution. PMID 26082096 DOI: 10.1111/Evo.12698  1
2015 Monnahan PJ, Kelly JK. Epistasis Is a Major Determinant of the Additive Genetic Variance in Mimulus guttatus. Plos Genetics. 11: e1005201. PMID 25946702 DOI: 10.1371/Journal.Pgen.1005201  1
2015 Fishman L, Kelly JK. Centromere-associated meiotic drive and female fitness variation in Mimulus. Evolution; International Journal of Organic Evolution. 69: 1208-18. PMID 25873401 DOI: 10.1111/Evo.12661  1
2015 Colicchio JM, Monnahan PJ, Kelly JK, Hileman LC. Gene expression plasticity resulting from parental leaf damage in Mimulus guttatus. The New Phytologist. 205: 894-906. PMID 25297849 DOI: 10.1111/Nph.13081  1
2015 Colicchio JM, Miura F, Kelly JK, Ito T, Hileman LC. DNA methylation and gene expression in Mimulus guttatus Bmc Genomics. DOI: 10.1186/s12864-015-1668-0  1
2015 Crawford DJ, Anderson GJ, Silva LB, de Sequeira MM, Moura M, Santos-Guerra A, Kelly JK, Mort ME. Breeding systems in Tolpis (Asteraceae) in the Macaronesian islands: the Azores, Madeira and the Canaries Plant Systematics and Evolution. 301: 1981-1993. DOI: 10.1007/S00606-015-1210-5  1
2014 Holeski LM, Monnahan P, Koseva B, McCool N, Lindroth RL, Kelly JK. A high-resolution genetic map of yellow monkeyflower identifies chemical defense QTLs and recombination rate variation. G3 (Bethesda, Md.). 4: 813-21. PMID 24626287 DOI: 10.1534/G3.113.010124  0.72
2014 Delph LF, Kelly JK. On the importance of balancing selection in plants. The New Phytologist. 201: 45-56. PMID 23952298 DOI: 10.1111/Nph.12441  1
2013 Kelly JK, Koseva B, Mojica JP. The genomic signal of partial sweeps in Mimulus guttatus. Genome Biology and Evolution. 5: 1457-69. PMID 23828880 DOI: 10.1093/Gbe/Evt100  1
2013 Soto-Trejo F, Kelly JK, Archibald JK, Mort ME, Santos-Guerra A, Crawford DJ. The genetics of self-compatibility and associated floral characters in Tolpis (Asteraceae) in the Canary Islands International Journal of Plant Sciences. 174: 171-178. DOI: 10.1086/668788  1
2012 Ward JK, Samanta Roy D, Chatterjee I, Bone CR, Springer CJ, Kelly JK. Identification of a major QTL that alters flowering time at elevated [CO(2)] in Arabidopsis thaliana. Plos One. 7: e49028. PMID 23185291 DOI: 10.1371/Journal.Pone.0049028  1
2012 Koelling VA, Monnahan PJ, Kelly JK. A Bayesian method for the joint estimation of outcrossing rate and inbreeding depression. Heredity. 109: 393-400. PMID 22990309 DOI: 10.1038/Hdy.2012.58  1
2012 Mojica JP, Lee YW, Willis JH, Kelly JK. Spatially and temporally varying selection on intrapopulation quantitative trait loci for a life history trade-off in Mimulus guttatus. Molecular Ecology. 21: 3718-28. PMID 22686425 DOI: 10.1111/J.1365-294X.2012.05662.X  1
2012 Storz JF, Natarajan C, Cheviron ZA, Hoffmann FG, Kelly JK. Altitudinal variation at duplicated β-globin genes in deer mice: effects of selection, recombination, and gene conversion. Genetics. 190: 203-16. PMID 22042573 DOI: 10.1534/Genetics.111.134494  1
2011 Magwene PM, Willis JH, Kelly JK. The statistics of bulk segregant analysis using next generation sequencing. Plos Computational Biology. 7: e1002255. PMID 22072954 DOI: 10.1371/Journal.Pcbi.1002255  1
2011 Kelly JK, Mojica JP. Interactions among flower-size QTL of Mimulus guttatus are abundant but highly variable in nature. Genetics. 189: 1461-71. PMID 21926295 DOI: 10.1534/Genetics.111.132423  1
2011 Roels SA, Kelly JK. Rapid evolution caused by pollinator loss in Mimulus guttatus. Evolution; International Journal of Organic Evolution. 65: 2541-52. PMID 21884055 DOI: 10.1111/J.1558-5646.2011.01326.X  1
2011 Scoville AG, Lee YW, Willis JH, Kelly JK. Explaining the heritability of an ecologically significant trait in terms of individual quantitative trait loci. Biology Letters. 7: 896-8. PMID 21653565 DOI: 10.1098/Rsbl.2011.0409  1
2011 Scoville AG, Barnett LL, Bodbyl-Roels S, Kelly JK, Hileman LC. Differential regulation of a MYB transcription factor is correlated with transgenerational epigenetic inheritance of trichome density in Mimulus guttatus. The New Phytologist. 191: 251-63. PMID 21352232 DOI: 10.1111/J.1469-8137.2011.03656.X  1
2011 Zhou Y, Kelly JK, Greenfield MD. Testing the fisherian mechanism: Examining the genetic correlation between male song and female response in waxmoths Evolutionary Ecology. 25: 307-329. DOI: 10.1007/S10682-010-9421-2  1
2010 Mojica JP, Kelly JK. Viability selection prior to trait expression is an essential component of natural selection. Proceedings. Biological Sciences / the Royal Society. 277: 2945-50. PMID 20462906 DOI: 10.1098/Rspb.2010.0568  1
2010 Holeski LM, Chase-Alone R, Kelly JK. The genetics of phenotypic plasticity in plant defense: trichome production in Mimulus guttatus. The American Naturalist. 175: 391-400. PMID 20180699 DOI: 10.1086/651300  1
2010 Eckert CG, Kalisz S, Geber MA, Sargent R, Elle E, Cheptou PO, Goodwillie C, Johnston MO, Kelly JK, Moeller DA, Porcher E, Ree RH, Vallejo-Marín M, Winn AA. Plant mating systems in a changing world. Trends in Ecology & Evolution. 25: 35-43. PMID 19683360 DOI: 10.1016/J.Tree.2009.06.013  1
2010 Crawford DJ, Archibald JK, Kelly JK, Mort ME, Santos-Guerra A. Mixed mating in the 'obligately outcrossing'Tolpis (Asteraceae) of the Canary Islands Plant Species Biology. 25: 114-119. DOI: 10.1111/J.1442-1984.2010.00275.X  1
2009 Marriage TN, Kelly JK. Inbreeding depression in an asexual population of Mimulus guttatus. Journal of Evolutionary Biology. 22: 2320-31. PMID 19824930 DOI: 10.1111/J.1420-9101.2009.01848.X  1
2009 Wacker MJ, Kosloski LM, Gilbert WJ, Touchberry CD, Moore DS, Kelly JK, Brotto M, Orr JA. Inhibition of thromboxane A2-induced arrhythmias and intracellular calcium changes in cardiac myocytes by blockade of the inositol trisphosphate pathway. The Journal of Pharmacology and Experimental Therapeutics. 331: 917-24. PMID 19741149 DOI: 10.1124/Jpet.109.157677  1
2009 Storz JF, Runck AM, Sabatino SJ, Kelly JK, Ferrand N, Moriyama H, Weber RE, Fago A. Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin. Proceedings of the National Academy of Sciences of the United States of America. 106: 14450-5. PMID 19667207 DOI: 10.1073/Pnas.0905224106  1
2009 Scoville A, Lee YW, Willis JH, Kelly JK. Contribution of chromosomal polymorphisms to the G-matrix of Mimulus guttatus. The New Phytologist. 183: 803-15. PMID 19659590 DOI: 10.1111/J.1469-8137.2009.02947.X  1
2009 Marriage TN, Hudman S, Mort ME, Orive ME, Shaw RG, Kelly JK. Direct estimation of the mutation rate at dinucleotide microsatellite loci in Arabidopsis thaliana (Brassicaceae). Heredity. 103: 310-7. PMID 19513093 DOI: 10.1038/Hdy.2009.67  1
2009 Porcher E, Kelly JK, Cheptou PO, Eckert CG, Johnston MO, Kalisz S. The genetic consequences of fluctuating inbreeding depression and the evolution of plant selfing rates. Journal of Evolutionary Biology. 22: 708-17. PMID 19228271 DOI: 10.1111/J.1420-9101.2009.01705.X  1
2009 Kelly JK. Connecting QTLS to the g-matrix of evolutionary quantitative genetics. Evolution; International Journal of Organic Evolution. 63: 813-25. PMID 19087179 DOI: 10.1111/J.1558-5646.2008.00590.X  1
2009 Johnston MO, Porcher E, Cheptou PO, Eckert CG, Elle E, Geber MA, Kalisz S, Kelly JK, Moeller DA, Vallejo-Marín M, Winn AA. Correlations among fertility components can maintain mixed mating in plants. The American Naturalist. 173: 1-11. PMID 19055444 DOI: 10.1086/593705  1
2008 Kelly JK, Holeski LM, Arathi HS. The genetic correlation between flower size and water use efficiency in monkeyflowers. Evolutionary Ecology Research. 10: 147-152. PMID 20676232  1
2008 Storz JF, Kelly JK. Effects of spatially varying selection on nucleotide diversity and linkage disequilibrium: insights from deer mouse globin genes. Genetics. 180: 367-79. PMID 18716337 DOI: 10.1534/Genetics.108.088732  1
2008 Wacker MJ, Godard MP, McCabe EH, Donnelly JE, Kelly JK. Sex difference in the association of the angiotensin converting enzyme I/D polymorphism and body mass index. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 14: CR353-7. PMID 18591916  1
2008 Springer CJ, Orozco RA, Kelly JK, Ward JK. Elevated CO2 influences the expression of floral-initiation genes in Arabidopsis thaliana. The New Phytologist. 178: 63-7. PMID 18315697 DOI: 10.1111/J.1469-8137.2008.02387.X  1
2008 Kelly JK. Testing the rare-alleles model of quantitative variation by artificial selection. Genetica. 132: 187-98. PMID 17607507 DOI: 10.1007/S10709-007-9163-4  1
2008 Crawford DJ, Archibald JK, Stoermer D, Mort ME, Kelly JK, Santos-Guerra A. A test of Baker's law: Breeding systems and the radiation of Tolpis (Asteraceae) in the Canary Islands International Journal of Plant Sciences. 169: 782-791. DOI: 10.1086/533604  1
2007 Kelly JK. Mutation-selection balance in mixed mating populations. Journal of Theoretical Biology. 246: 355-65. PMID 17291538 DOI: 10.1016/J.Jtbi.2006.12.030  1
2006 Kelly JK, Tourtellot MK. The genetic analysis of family structured inbreeding depression studies. Heredity. 97: 346-54. PMID 16896343 DOI: 10.1038/Sj.Hdy.6800879  1
2006 Holeski LM, Kelly JK. Mating system and the evolution of quantitative traits: an experimental study of Mimulus guttatus. Evolution; International Journal of Organic Evolution. 60: 711-23. PMID 16739453 DOI: 10.1111/J.0014-3820.2006.Tb01150.X  1
2006 Kelly JK. Geographical variation in selection, from phenotypes to molecules. The American Naturalist. 167: 481-95. PMID 16670992 DOI: 10.1086/501167  1
2006 Danielson-François AM, Kelly JK, Greenfield MD. Genotype x environment interaction for male attractiveness in an acoustic moth: evidence for plasticity and canalization. Journal of Evolutionary Biology. 19: 532-42. PMID 16599929 DOI: 10.1111/J.1420-9101.2005.01006.X  1
2005 Archibald JK, Mort ME, Crawford DJ, Kelly JK. Life history affects the evolution of reproductive isolation among species of Coreopsis (Asteraceae). Evolution; International Journal of Organic Evolution. 59: 2362-9. PMID 16396177  1
2005 Kelly JK. Epistasis in monkeyflowers. Genetics. 171: 1917-31. PMID 15944350 DOI: 10.1534/Genetics.105.041525  1
2005 Kelly JK. Family level inbreeding depression and the evolution of plant mating systems. The New Phytologist. 165: 55-62. PMID 15720620 DOI: 10.1111/J.1469-8137.2004.01184.X  1
2005 Orive ME, Stearns MN, Kelly JK, Barfield M, Smith MS, Holt RD. Viral infection in internally structured hosts. I. Conditions for persistent infection. Journal of Theoretical Biology. 232: 453-66. PMID 15588629 DOI: 10.1016/J.Jtbi.2004.08.023  1
2005 Williamson S, Perry SM, Bustamante CD, Orive ME, Stearns MN, Kelly JK. A statistical characterization of consistent patterns of human immunodeficiency virus evolution within infected patients. Molecular Biology and Evolution. 22: 456-68. PMID 15509726 DOI: 10.1093/Molbev/Msi029  1
2004 Ward JK, Kelly JK. Scaling up evolutionary responses to elevated CO2: Lessons from Arabidopsis Ecology Letters. 7: 427-440. DOI: 10.1111/J.1461-0248.2004.00589.X  1
2004 Arathi HS, Kelly JK. Corolla morphology facilitates both autogamy and bumblebee pollination in Mimulus guttatus International Journal of Plant Sciences. 165: 1039-1045. DOI: 10.1086/423876  1
2003 Kelly JK. Deleterious mutations and the genetic variance of male fitness components in Mimulus guttatus. Genetics. 164: 1071-85. PMID 12871916  1
2003 Kelly JK, Williamson S, Orive ME, Smith MS, Holt RD. Linking dynamical and population genetic models of persistent viral infection. The American Naturalist. 162: 14-28. PMID 12856234 DOI: 10.1086/375543  1
2003 Kelly JK, Arathi HS. Inbreeding and the genetic variance in floral traits of Mimulus guttatus. Heredity. 90: 77-83. PMID 12522429 DOI: 10.1038/Sj.Hdy.6800181  1
2002 Kelly JK, Rasch A, Kalisz S. A method to estimate pollen viability from pollen size variation. American Journal of Botany. 89: 1021-3. PMID 21665702 DOI: 10.3732/Ajb.89.6.1021  1
2002 Kelly JK, Willis JH. A manipulative experiment to estimate biparental inbreeding in monkeyflowers International Journal of Plant Sciences. 163: 575-579. DOI: 10.1086/340735  1
2002 Arathi HS, Rasch A, Cox C, Kelly JK. Autogamy and floral longevity in Mimulus guttatus International Journal of Plant Sciences. 163: 567-573. DOI: 10.1086/340444  1
2001 Kelly JK, Willis JH. Deleterious mutations and genetic variation for flower size in Mimulus guttatus. Evolution; International Journal of Organic Evolution. 55: 937-42. PMID 11430654 DOI: 10.1554/0014-3820(2001)055[0937:Dmagvf]2.0.Co;2  1
2000 Kelly JK, Williamson S. Predicting response to selection on a quantitative trait: a comparison between models for mixed-mating populations. Journal of Theoretical Biology. 207: 37-56. PMID 11027478 DOI: 10.1006/Jtbi.2000.2154  1
2000 Kelly JK, Wade MJ. Molecular evolution near a two-locus balanced polymorphism. Journal of Theoretical Biology. 204: 83-101. PMID 10772850 DOI: 10.1006/Jtbi.2000.2003  1
1999 Kelly JK. An experimental method for evaluating the contribution of deleterious mutations to quantitative trait variation. Genetical Research. 73: 263-73. PMID 10425922 DOI: 10.1017/S0016672399003766  1
1999 Kelly JK. Response to selection in partially self-fertilizing populations. I. Selection on a single trait Evolution. 53: 336-349.  1
1999 Kelly JK. Response to selection in partially self-fertilizing populations. II. Selection on multiple traits Evolution. 53: 350-357.  1
1997 Kelly JK. A test of neutrality based on interlocus associations. Genetics. 146: 1197-206. PMID 9215920  1
1997 Kelly JK. Fitness variation across a subdivided population of the annual plant Impatiens capensis Evolution. 51: 1100-1111.  1
1996 Kelly JK, Noor MA. Speciation by reinforcement: a model derived from studies of Drosophila. Genetics. 143: 1485-97. PMID 8807317  1
1996 Kelly JK. Replication rate and evolution in the human immunodeficiency virus. Journal of Theoretical Biology. 180: 359-64. PMID 8776467 DOI: 10.1006/Jtbi.1996.0108  1
1996 Kelly JK. Kin selection in the annual plant Impatiens capensis American Naturalist. 147: 899-918. DOI: 10.1086/285885  1
1994 Kelly JK. The effect of scale dependent processes on kin selection: mating and density regulation. Theoretical Population Biology. 46: 32-57. PMID 8079196 DOI: 10.1006/Tpbi.1994.1018  1
1994 Kelly JK. An application of population genetic theory to synonymous gene sequence evolution in the human immunodeficiency virus (HIV). Genetical Research. 64: 1-9. PMID 7958828 DOI: 10.1017/S0016672300032481  1
1994 Kelly JK. A model for the evolution of communal foraging in hierarchically structured populations Behavioral Ecology and Sociobiology. 35: 205-212. DOI: 10.1007/Bf00167961  1
1992 Kelly JK. Kin selection in density regulated populations. Journal of Theoretical Biology. 157: 447-61. PMID 1460875 DOI: 10.1016/S0022-5193(05)80663-0  1
1992 Kelly JK. Restricted migration and the evolution of altruism Evolution. 46: 1492-1495.  1
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