John K. Kelly, Ph.D. - Related publications

University of Kansas University of Kansas, Lawrence, KS, United States 
quantitative and population genetics, plant mating system evolution
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Glaser-Schmitt A, Wittmann MJ, Ramnarine TJS, Parsch J. Sexual antagonism, temporally fluctuating selection, and variable dominance affect a regulatory polymorphism in Drosophila melanogaster. Molecular Biology and Evolution. PMID 34289067 DOI: 10.1093/molbev/msab215   
2021 Abdelaziz M, Muñoz-Pajares AJ, Berbel M, García-Muñoz A, Gómez JM, Perfectti F. Asymmetric Reproductive Barriers and Gene Flow Promote the Rise of a Stable Hybrid Zone in the Mediterranean High Mountain. Frontiers in Plant Science. 12: 687094. PMID 34512685 DOI: 10.3389/fpls.2021.687094   
2021 Marrot P, Latutrie M, Piquet J, Pujol B. Natural selection fluctuates at an extremely fine spatial scale inside a wild population of snapdragon plants. Evolution; International Journal of Organic Evolution. PMID 34535895 DOI: 10.1111/evo.14359   
2021 Stephan W. Rapid Evolutionary Adaptation in Response to Selection on Quantitative Traits. Life (Basel, Switzerland). 11. PMID 34440541 DOI: 10.3390/life11080797   
2021 Cropp R, Norbury J. The eco-evolutionary modelling of populations and their traits using a measure of trait differentiation. Journal of Theoretical Biology. 531: 110893. PMID 34481861 DOI: 10.1016/j.jtbi.2021.110893   
2021 Kay KM, Surget-Groba Y. The genetic basis of floral mechanical isolation between two hummingbird-pollinated Neotropical understorey herbs. Molecular Ecology. PMID 34487383 DOI: 10.1111/mec.16165   
2021 D'Aguillo M, Hazelwood C, Quarles B, Donohue K. Genetic Consequences of Biologically Altered Environments. The Journal of Heredity. PMID 34534330 DOI: 10.1093/jhered/esab047   
2021 Agrawal AA, Hastings AP, Maron JL. Evolution and seed dormancy shape plant genotypic structure through a successional cycle. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34400497 DOI: 10.1073/pnas.2026212118   
2021 Brass DP, Cobbold CA, Ewing DA, Purse BV, Callaghan A, White SM. Phenotypic plasticity as a cause and consequence of population dynamics. Ecology Letters. PMID 34412157 DOI: 10.1111/ele.13862   
2021 Wright SJ, Goad DM, Gross BL, Muñoz PR, Olsen KM. Genetic trade-offs underlie divergent life history strategies for local adaptation in white clover. Molecular Ecology. PMID 34532899 DOI: 10.1111/mec.16180   
2021 Gompert Z, Springer A, Brady M, Chaturvedi S, Lucas LK. Genomic time-series data show that gene flow maintains high genetic diversity despite substantial genetic drift in a butterfly species. Molecular Ecology. PMID 34379852 DOI: 10.1111/mec.16111   
2021 Campbell MA, Anderson EC, Garza JC, Pearse DE. Polygenic basis and the role of genome duplication in adaptation to similar selective environments. The Journal of Heredity. PMID 34420047 DOI: 10.1093/jhered/esab049   
2021 Bertram J. Allele frequency divergence reveals ubiquitous influence of positive selection in Drosophila. Plos Genetics. 17: e1009833. PMID 34591854 DOI: 10.1371/journal.pgen.1009833   
2021 Qiu T, Liu Z, Yang Y, Liu B. Epigenetic variation associated with responses to different habitats in the context of genetic divergence in . Ecology and Evolution. 11: 11874-11889. PMID 34522347 DOI: 10.1002/ece3.7954   
2021 Sun WH, Chen DQ, Carballar-Lejarazu R, Yang Y, Xiang S, Qiu MY, Zou SQ. Genetic diversity and population structure of , a monotypic species. Peerj. 9: e12024. PMID 34513336 DOI: 10.7717/peerj.12024   
2021 Aakanksha, Yadava SK, Yadav BG, Gupta V, Mukhopadhyay A, Pental D, Pradhan AK. Genetic Analysis of Heterosis for Yield Influencing Traits in Using a Doubled Haploid Population and Its Backcross Progenies. Frontiers in Plant Science. 12: 721631. PMID 34603351 DOI: 10.3389/fpls.2021.721631   
2021 Valencia-Montoya WA, Flaven E, Pouzadoux J, Imbert E, Cheptou PO. Rapid divergent evolution of an annual plant across a latitudinal gradient revealed by seed resurrection. Evolution; International Journal of Organic Evolution. PMID 34558662 DOI: 10.1111/evo.14364   
2021 Guo X, He C, Cheng F, Zhong Y, Cheng X, Tao X. Dissection of Allelic Variation Underlying Floral and Fruit Traits in Flare Tree Peony () Using Association Mapping. Frontiers in Genetics. 12: 664814. PMID 34456963 DOI: 10.3389/fgene.2021.664814   
2021 Chew PC, Christianus A, Zudaidy JM, Ina-Salwany MY, Chong CM, Tan SG. Microsatellite Characterization of Malaysian Mahseer ( spp.) for Improvement of Broodstock Management and Utilization. Animals : An Open Access Journal From Mdpi. 11. PMID 34573599 DOI: 10.3390/ani11092633   
2021 Tanaka H, Kreisberg JF, Ideker T. Genetic dissection of complex traits using hierarchical biological knowledge. Plos Computational Biology. 17: e1009373. PMID 34534210 DOI: 10.1371/journal.pcbi.1009373   
2021 Sheoran N, Ganesan P, Mughal NM, Yadav IS, Kumar A. Genome assisted molecular typing and pathotyping of rice blast pathogen, Magnaporthe oryzae, reveals a genetically homogenous population with high virulence diversity. Fungal Biology. 125: 733-747. PMID 34420700 DOI: 10.1016/j.funbio.2021.04.007   
2021 Schiffman JS, Ralph PL. System drift and speciation. Evolution; International Journal of Organic Evolution. PMID 34529267 DOI: 10.1111/evo.14356   
2021 Espinosa-Soto C, Hernández U, Posadas-García YS. Recombination facilitates genetic assimilation of new traits in gene regulatory networks. Evolution & Development. e12391. PMID 34455697 DOI: 10.1111/ede.12391   
2021 Flynn RW, Welch AM, Lance SL. Divergence in heritable life history traits suggests potential for local adaptation and trade-offs associated with a coal ash disposal site. Evolutionary Applications. 14: 2039-2054. PMID 34429747 DOI: 10.1111/eva.13256   
2021 Matsusaka D, Filiault D, Sanchez DH, Botto JF. Ultra-High-Density QTL Marker Mapping for Seedling Photomorphogenesis Mediating Arabidopsis Establishment in Southern Patagonia. Frontiers in Plant Science. 12: 677728. PMID 34367202 DOI: 10.3389/fpls.2021.677728   
2021 Kozakiewicz CP, Funk WC. Bat signal (of selection) summons evolutionary hope in face of epidemic disease: an example of the power and promise of genetic monitoring. Molecular Ecology. PMID 34534380 DOI: 10.1111/mec.16181   
2021 Zhao W, Wang X, Li L, Li J, Yin H, Zhao Y, Chen X. Evaluation of environmental factors affecting the genetic diversity, genetic structure, and the potential distribution of Georgi under changing climate. Ecology and Evolution. 11: 12294-12306. PMID 34594500 DOI: 10.1002/ece3.7803   
2021 Fazzi-Gomes PF, Aguiar JDP, Marques D, Fonseca Cabral G, Moreira FC, Rodrigues MDN, Silva CS, Hamoy I, Santos S. Novel Microsatellite Markers Used for Determining Genetic Diversity and Tracing of Wild and Farmed Populations of the Amazonian Giant Fish . Genes. 12. PMID 34573306 DOI: 10.3390/genes12091324   
2021 Du L, Zhang H, Xin W, Ma K, Du D, Yu C, Liu Y. Dissecting the Genetic Basis of Flowering Time and Height Related-Traits Using Two Doubled Haploid Populations in Maize. Plants (Basel, Switzerland). 10. PMID 34451629 DOI: 10.3390/plants10081585   
2021 Cope OL, Keefover-Ring K, Kruger EL, Lindroth RL. Growth-defense trade-offs shape population genetic composition in an iconic forest tree species. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34507992 DOI: 10.1073/pnas.2103162118   
2021 Pandey AK, Jiang L, Moshelion M, Gosa SC, Sun T, Lin Q, Wu R, Xu P. Functional physiological phenotyping with functional mapping: A general framework to bridge the phenotype-genotype gap in plant physiology. Iscience. 24: 102846. PMID 34381971 DOI: 10.1016/j.isci.2021.102846   
2021 Scott BA, Haile-Mariam M, Cocks BG, Pryce JE. How genomic selection has increased rates of genetic gain and inbreeding in the Australian national herd, genomic information nucleus, and bulls. Journal of Dairy Science. PMID 34454757 DOI: 10.3168/jds.2021-20326   
2021 Jensen EL, Gaughran SJ, Garrick RC, Russello MA, Caccone A. Demographic history and patterns of molecular evolution from whole genome sequencing in the radiation of Galapagos giant tortoises. Molecular Ecology. PMID 34510620 DOI: 10.1111/mec.16176   
2021 Cheng YC, Li G, Yin M, Adegoke TV, Wang YF, Tong XH, Zhang J, Ying JZ. Verification and dissection of one quantitative trait locus for grain size and weight on chromosome 1 in rice. Scientific Reports. 11: 18252. PMID 34521909 DOI: 10.1038/s41598-021-97622-8   
2021 Kassahun D, Taye M, Kebede D, Tilahun M, Tesfa A, Bitew A, Kebede A, Meseret M, Lakew E, Bimrow T, Haile A. Phenotypic and genetic parameter estimates for early growth, growth rate and growth efficiency-related traits of Fogera cattle in Ethiopia. Veterinary Medicine and Science. PMID 34480429 DOI: 10.1002/vms3.628   
2021 Sell-Kubiak E. Selection for litter size and litter birthweight in Large White pigs: Maximum, mean and variability of reproduction traits. Animal : An International Journal of Animal Bioscience. 15: 100352. PMID 34534762 DOI: 10.1016/j.animal.2021.100352   
2021 Wang Q, Liu Y, Yan L, Chen L, Li B. Genome-Wide SNP Discovery and Population Genetic Analysis of in China Seas. Frontiers in Genetics. 12: 717764. PMID 34490044 DOI: 10.3389/fgene.2021.717764   
2021 Peltier E, Bibi-Triki S, Dutreux F, Caradec C, Friedrich A, Llorente B, Schacherer J. Dissection of quantitative trait loci in the Lachancea waltii yeast species highlights major hotspots. G3 (Bethesda, Md.). 11. PMID 34544138 DOI: 10.1093/g3journal/jkab242   
2021 Dietz N, Combs-Giroir R, Cooper G, Stacey M, Miranda C, Bilyeu K. Geographic distribution of the E1 family of genes and their effects on reproductive timing in soybean. Bmc Plant Biology. 21: 441. PMID 34587901 DOI: 10.1186/s12870-021-03197-x   
2021 Weston LM, Mattingly KZ, Day CTC, Hovick SM. Potential local adaptation in populations of invasive reed canary grass () across an urbanization gradient. Ecology and Evolution. 11: 11457-11476. PMID 34429933 DOI: 10.1002/ece3.7938   
2021 Feldmann MJ, Piepho HP, Bridges WC, Knapp SJ. Average semivariance yields accurate estimates of the fraction of marker-associated genetic variance and heritability in complex trait analyses. Plos Genetics. 17: e1009762. PMID 34437540 DOI: 10.1371/journal.pgen.1009762   
2021 Madgwick PG, Kanitz R. Evolution of resistance under alternative models of selective interference. Journal of Evolutionary Biology. PMID 34449949 DOI: 10.1111/jeb.13919   
2021 Goto S, Mori H, Uchiyama K, Ishizuka W, Taneda H, Kono M, Kajiya-Kanegae H, Iwata H. Genetic Dissection of Growth and Eco-Physiological Traits Associated with Altitudinal Adaptation in Sakhalin Fir () Based on QTL Mapping. Genes. 12. PMID 34440284 DOI: 10.3390/genes12081110   
2021 Liu C, Liu X, Han Y, Wang X, Ding Y, Meng H, Cheng Z. Genomic Prediction and the Practical Breeding of 12 Quantitative-Inherited Traits in Cucumber ( L.). Frontiers in Plant Science. 12: 729328. PMID 34504510 DOI: 10.3389/fpls.2021.729328   
2021 Hu H, Campbell MT, Yeats TH, Zheng X, Runcie DE, Covarrubias-Pazaran G, Broeckling C, Yao L, Caffe-Treml M, Gutiérrez LA, Smith KP, Tanaka J, Hoekenga OA, Sorrells ME, Gore MA, et al. Multi-omics prediction of oat agronomic and seed nutritional traits across environments and in distantly related populations. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 34643760 DOI: 10.1007/s00122-021-03946-4   
2021 Cheng JY, Stern AJ, Racimo F, Nielsen R. Detecting selection in multiple populations by modelling ancestral admixture components. Molecular Biology and Evolution. PMID 34626111 DOI: 10.1093/molbev/msab294   
2021 Su Y, Huang Q, Wang Z, Wang T. High genetic and epigenetic variation of transposable elements: Potential drivers to rapid adaptive evolution for the noxious invasive weed . Ecology and Evolution. 11: 13501-13517. PMID 34646486 DOI: 10.1002/ece3.8075   
2021 Zhang J, Debets AJM, Verweij PE, Snelders E. Azole-Resistance Development; How the Lifecycle Defines the Potential for Adaptation. Journal of Fungi (Basel, Switzerland). 7. PMID 34436138 DOI: 10.3390/jof7080599   
2021 Sharma S, Pinson SRM, Gealy DR, Edwards JD. Genomic prediction and QTL mapping of root system architecture and above-ground agronomic traits in rice (Oryza sativa L.) with a multitrait index and Bayesian networks. G3 (Bethesda, Md.). 11. PMID 34568907 DOI: 10.1093/g3journal/jkab178   
2021 Tripodi P, Rabanus-Wallace MT, Barchi L, Kale S, Esposito S, Acquadro A, Schafleitner R, van Zonneveld M, Prohens J, Diez MJ, Börner A, Salinier J, Caromel B, Bovy A, Boyaci F, et al. Global range expansion history of pepper ( spp.) revealed by over 10,000 genebank accessions. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34400501 DOI: 10.1073/pnas.2104315118