Jeremy M. Brown, Ph.D. - Publications

Affiliations: 
Biological Sciences Louisiana State University, Baton Rouge, LA, United States 
Area:
phylogenetics, molecular evolution, phylogeography
Website:
http://www.phyleauxgenetics.org

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Fujimoto K, Coghill LM, Weier CA, Hwang LY, Kim JY, Schneider J, Metzker ML, Brown JM. Lack of Support for Socially Connected HIV-1 Transmission among Young Adult Black MSM. Aids Research and Human Retroviruses. PMID 28398775 DOI: 10.1089/Aid.2016.0228  0.36
2016 Andersen JJ, Nelson BJ, Brown JM. EmpPrior: using outside empirical data to inform branch-length priors for Bayesian phylogenetics. Bmc Bioinformatics. 17: 253. PMID 27342194 DOI: 10.1186/S12859-016-1132-4  1
2015 Doyle VP, Young RE, Naylor GJ, Brown JM. Can we identify genes with increased phylogenetic reliability? Systematic Biology. PMID 26099258 DOI: 10.1093/Sysbio/Syv041  1
2015 Couturier J, Suliburk JW, Brown JM, Luke DJ, Agarwal N, Yu X, Nguyen C, Iyer D, Kozinetz CA, Overbeek PA, Metzker ML, Balasubramanyam A, Lewis DE. Human adipose tissue as a reservoir for memory CD4+ T cells and HIV. Aids (London, England). 29: 667-74. PMID 25849830 DOI: 10.1097/Qad.0000000000000599  1
2015 Nelson BJ, Andersen JJ, Brown JM. Deflating trees: improving Bayesian branch-length estimates using informed priors. Systematic Biology. 64: 441-7. PMID 25595363 DOI: 10.1093/Sysbio/Syv003  1
2014 Doyle VP, Andersen JJ, Nelson BJ, Metzker ML, Brown JM. Untangling the influences of unmodeled evolutionary processes on phylogenetic signal in a forensically important HIV-1 transmission cluster. Molecular Phylogenetics and Evolution. 75: 126-37. PMID 24589520 DOI: 10.1016/J.Ympev.2014.02.022  1
2014 Brown JM. Predictive approaches to assessing the fit of evolutionary models. Systematic Biology. 63: 289-92. PMID 24562916 DOI: 10.1093/Sysbio/Syu009  1
2012 Fong JJ, Brown JM, Fujita MK, Boussau B. A phylogenomic approach to vertebrate phylogeny supports a turtle-archosaur affinity and a possible paraphyletic lissamphibia. Plos One. 7: e48990. PMID 23145043 DOI: 10.1371/Journal.Pone.0048990  1
2011 Boussau B, Brown JM, Fujita MK. Nonadaptive evolution of mitochondrial genome size. Evolution; International Journal of Organic Evolution. 65: 2706-11. PMID 21884067 DOI: 10.1111/J.1558-5646.2011.01322.X  1
2011 Brown JM, Savidge K, McTavish EJ. DIM SUM: demography and individual migration simulated using a Markov chain. Molecular Ecology Resources. 11: 358-63. PMID 21429144 DOI: 10.1111/J.1755-0998.2010.02925.X  0.96
2010 Scaduto DI, Brown JM, Haaland WC, Zwickl DJ, Hillis DM, Metzker ML. Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 107: 21242-7. PMID 21078965 DOI: 10.1073/Pnas.1015673107  1
2010 Brown JM, Hedtke SM, Lemmon AR, Lemmon EM. When trees grow too long: investigating the causes of highly inaccurate bayesian branch-length estimates. Systematic Biology. 59: 145-61. PMID 20525627 DOI: 10.1093/Sysbio/Syp081  1
2009 Lemmon AR, Brown JM, Stanger-Hall K, Lemmon EM. The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference. Systematic Biology. 58: 130-45. PMID 20525573 DOI: 10.1093/Sysbio/Syp017  1
2007 Brown JM, Lemmon AR. The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics. Systematic Biology. 56: 643-55. PMID 17661232 DOI: 10.1080/10635150701546249  1
2005 Brown JM, Pauly GB. Increased rates of molecular evolution in an equatorial plant clade: an effect of environment or phylogenetic nonindependence? Evolution; International Journal of Organic Evolution. 59: 238-42. PMID 15792244 DOI: 10.1554/04-360  1
2004 Agrawal AF, Brown JM, Brodie ED. On the social structure of offspring rearing in the burrower bug, Sehirus cinctus (Hemiptera: Cydnidae) Behavioral Ecology and Sociobiology. 57: 139-148. DOI: 10.1007/S00265-004-0841-2  1
2003 Brown JM, Agrawal AF, Brodie ED. An analysis of single clutch paternity in the burrower bug Sehirus cinctus using microsatellites Journal of Insect Behavior. 16: 731-745. DOI: 10.1023/B:Joir.0000018317.55712.D3  1
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