Jeremy M. Brown, Ph.D. - Related publications

Biological Sciences Louisiana State University, Baton Rouge, LA, United States 
phylogenetics, molecular evolution, phylogeography
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Vankan M, Ho SYW, Duchêne DA. Evolutionary Rate Variation Among Lineages in Gene Trees has a Negative Impact on Species-Tree Inference. Systematic Biology. PMID 34255084 DOI: 10.1093/sysbio/syab051   
2021 Vankan M, Ho SYW, Duchêne DA. Evolutionary Rate Variation Among Lineages in Gene Trees has a Negative Impact on Species-Tree Inference. Systematic Biology. PMID 34255084 DOI: 10.1093/sysbio/syab051   
2021 Cunha TJ, Reimer JD, Giribet G. Investigating Sources of Conflict in Deep Phylogenomics of Vetigastropod Snails. Systematic Biology. PMID 34469579 DOI: 10.1093/sysbio/syab071   
2021 Carnovale CS, Fernández GP, Merino ML, Mora MS. Redefining the Distributional Boundaries and Phylogenetic Relationships for Ctenomids From Central Argentina. Frontiers in Genetics. 12: 698134. PMID 34422000 DOI: 10.3389/fgene.2021.698134   
2021 Harvey VL, Keating JN, Buckley M. Phylogenetic analyses of ray-finned fishes (Actinopterygii) using collagen type I protein sequences. Royal Society Open Science. 8: 201955. PMID 34430038 DOI: 10.1098/rsos.201955   
2021 Rasplus JY, Rodriguez LJ, Sauné L, Peng YQ, Bain A, Kjellberg F, Harrison RD, Pereira RAS, Ubaidillah R, Tollon-Cordet C, Gautier M, Rossi JP, Cruaud A. Exploring systematic biases, rooting methods and morphological evidence to unravel the evolutionary history of the genus Ficus (Moraceae). Cladistics : the International Journal of the Willi Hennig Society. 37: 402-422. PMID 34478193 DOI: 10.1111/cla.12443   
2021 Cruaud A, Delvare G, Nidelet S, Sauné L, Ratnasingham S, Chartois M, Blaimer BB, Gates M, Brady SG, Faure S, van Noort S, Rossi JP, Rasplus JY. Ultra-Conserved Elements and morphology reciprocally illuminate conflicting phylogenetic hypotheses in Chalcididae (Hymenoptera, Chalcidoidea). Cladistics : the International Journal of the Willi Hennig Society. 37: 1-35. PMID 34478176 DOI: 10.1111/cla.12416   
2021 Baker CM, Buckman-Young RS, Costa CS, Giribet G. Phylogenomic analysis of velvet worms (Onychophora) uncovers an evolutionary radiation in the Neotropics. Molecular Biology and Evolution. PMID 34427671 DOI: 10.1093/molbev/msab251   
2021 Yang B, Zhang Z, Yang C, Wang Y, Orr MC, Hongbin W, Zhang AB. Identification of Species by Combining Molecular and Morphological Data Using Convolutional Neural Networks. Systematic Biology. PMID 34524452 DOI: 10.1093/sysbio/syab076   
2021 Yoo MJ, Lee BY, Kim S, Lim CE. Phylogenomics With Hyb-Seq Unravels Korean Evolution. Frontiers in Plant Science. 12: 645735. PMID 34305959 DOI: 10.3389/fpls.2021.645735   
2021 Yoo MJ, Lee BY, Kim S, Lim CE. Phylogenomics With Hyb-Seq Unravels Korean Evolution. Frontiers in Plant Science. 12: 645735. PMID 34305959 DOI: 10.3389/fpls.2021.645735   
2021 Seidel M, Sýkora V, Leschen RAB, Clarkson B, Fikáček M. Ancient relicts or recent immigrants? Different dating strategies alter diversification scenarios of New Zealand aquatic beetles (Coleoptera: Hydrophilidae: Berosus). Molecular Phylogenetics and Evolution. 163: 107241. PMID 34224848 DOI: 10.1016/j.ympev.2021.107241   
2021 Gippner S, Travers SL, Scherz MD, Colston TJ, Lyra ML, Mohan AV, Multzsch M, Nielsen SV, Rancilhac L, Glaw F, Bauer AM, Vences M. A comprehensive phylogeny of dwarf geckos of the genus Lygodactylus, with insights into their systematics and morphological variation. Molecular Phylogenetics and Evolution. 107311. PMID 34530117 DOI: 10.1016/j.ympev.2021.107311   
2021 Wang Y, Cao Z, Ogilvie HA, Nakhleh L. Phylogenomic assessment of the role of hybridization and introgression in trait evolution. Plos Genetics. 17: e1009701. PMID 34407067 DOI: 10.1371/journal.pgen.1009701   
2021 Zhang C, Dinh VU, Matsen FA. Nonbifurcating Phylogenetic Tree Inference via the Adaptive LASSO. Journal of the American Statistical Association. 116: 858-873. PMID 34305211 DOI: 10.1080/01621459.2020.1778481   
2021 Alda F, Ludt WB, Elías DJ, McMahan CD, Chakrabarty P. Comparing ultraconserved elements and exons for phylogenomic analyses of Middle American cichlids: when data agree to disagree. Genome Biology and Evolution. PMID 34272856 DOI: 10.1093/gbe/evab161   
2021 Duchêne DA, Mather N, Van Der Wal C, Ho SYW. Excluding loci with substitution saturation improves inferences from phylogenomic data. Systematic Biology. PMID 34508605 DOI: 10.1093/sysbio/syab075   
2021 Knyshov A, Weirauch C, Hoey-Chamberlain R. Phylogenetic relationships and revised classification of the true bug infraorder Dipsocoromorpha (Insecta: Hemiptera: Heteroptera). Cladistics : the International Journal of the Willi Hennig Society. 37: 248-275. PMID 34478197 DOI: 10.1111/cla.12435   
2021 Tian X, Guo J, Zhou X, Ma K, Ma Y, Shi T, Shi Y. Comparative and Evolutionary Analyses on the Complete Plastomes of Five Horticultural Plants. Frontiers in Plant Science. 12: 705874. PMID 34512691 DOI: 10.3389/fpls.2021.705874   
2021 Wertheim JO, Steel M, Sanderson MJ. Accuracy in near-perfect virus phylogenies. Systematic Biology. PMID 34398231 DOI: 10.1093/sysbio/syab069   
2021 Martinez-Gutierrez CA, Aylward FO. Phylogenetic Signal, Congruence, and Uncertainty across Bacteria and Archaea. Molecular Biology and Evolution. PMID 34436605 DOI: 10.1093/molbev/msab254   
2021 Cannon CH. Is speciation an inexorable march to reproductive isolation? Molecular Ecology. PMID 34407243 DOI: 10.1111/mec.16129   
2021 Debray K, Le Paslier MC, Bérard A, Thouroude T, Michel G, Marie-Magdelaine J, Bruneau A, Foucher F, Malécot V. Unveiling the Patterns of Reticulated Evolutionary Processes with Phylogenomics: Hybridization and Polyploidy in the genus Rosa. Systematic Biology. PMID 34329460 DOI: 10.1093/sysbio/syab064   
2021 Gowri Shankar P, Swamy P, Williams RC, Ganesh SR, Moss M, Höglund J, Das I, Sahoo G, Vijayakumar SP, Shanker K, Wüster W, Dutta SK. King or royal family? Testing for species boundaries in the King Cobra, Ophiophagus hannah (Cantor, 1836), using morphology and multilocus DNA analyses. Molecular Phylogenetics and Evolution. 107300. PMID 34474153 DOI: 10.1016/j.ympev.2021.107300   
2021 Acha S, Linan A, MacDougal J, Edwards C. The evolutionary history of vines in a neotropical biodiversity hotspot: phylogenomics and biogeography of a large passion flower clade (Passiflora section Decaloba). Molecular Phylogenetics and Evolution. 107260. PMID 34273502 DOI: 10.1016/j.ympev.2021.107260   
2021 Buffalo V. Quantifying the relationship between genetic diversity and population size suggests natural selection cannot explain Lewontin's paradox. Elife. 10. PMID 34409937 DOI: 10.7554/eLife.67509   
2021 Kimball RT, Guido M, Hosner PA, Braun EL. When good mitochondria go bad: Cyto-nuclear discordance in landfowl (Aves: Galliformes). Gene. 801: 145841. PMID 34274481 DOI: 10.1016/j.gene.2021.145841   
2021 Tice AK, Žihala D, Pánek T, Jones RE, Salomaki ED, Nenarokov S, Burki F, Eliáš M, Eme L, Roger AJ, Rokas A, Shen XX, Strassert JFH, Kolísko M, Brown MW. PhyloFisher: A phylogenomic package for resolving eukaryotic relationships. Plos Biology. 19: e3001365. PMID 34358228 DOI: 10.1371/journal.pbio.3001365   
2021 Shi F, Li H, Rong G, Zhang Z, Wang J. Improved Fixed-parameter Algorithm for the Tree Containment Problem on Unrooted Phylogenetic Network. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 34506290 DOI: 10.1109/TCBB.2021.3111660   
2021 Crous PW, Lombard L, Sandoval-Denis M, Seifert KA, Schroers HJ, Chaverri P, Gené J, Guarro J, Hirooka Y, Bensch K, Kema GHJ, Lamprecht SC, Cai L, Rossman AY, Stadler M, et al. : more than a node or a foot-shaped basal cell. Studies in Mycology. 98: 100116. PMID 34466168 DOI: 10.1016/j.simyco.2021.100116   
2021 Zhang H, Gou X, Li S, Wang C, Peng C, Hu C, Zhang M, Yu L, Su H. Complete mitochondrial genome of Black Drongo (Passeriformes: Dicruridae) and phylogenetic analyses. Mitochondrial Dna. Part B, Resources. 6: 2442-2444. PMID 34368441 DOI: 10.1080/23802359.2021.1920490   
2021 Gichira AW, Chen L, Li Z, Hu G, Saina JK, Gituru RW, Wang Q, Chen J. Plastid phylogenomics and insights into the inter-mountain dispersal of the Eastern African giant senecios (Dendrosenecio, Asteraceae). Molecular Phylogenetics and Evolution. 107271. PMID 34332034 DOI: 10.1016/j.ympev.2021.107271   
2021 Moreira C Fernandes V, Giraldo-Silva A, Roush D, Garcia-Pichel F. Coleofasciculaceae, a monophyletic home for the Microcoleus steenstrupii complex and other desiccation-tolerant filamentous cyanobacteria. Journal of Phycology. PMID 34289106 DOI: 10.1111/jpy.13199   
2021 Chazot N, Blandin P, Debat V, Elias M, Condamine FL. Punctuational ecological changes rather than global factors drive species diversification and the evolution of wing phenotypes in Morpho butterflies. Journal of Evolutionary Biology. PMID 34449944 DOI: 10.1111/jeb.13921   
2021 Noll FB, da Silva M, Soleman RA, Lopes RB, Grandinete YC, Almeida EAB, Wenzel JW, Carpenter JM. Marimbondos: systematics, biogeography, and evolution of social behaviour of neotropical swarm-founding wasps (Hymenoptera: Vespidae: Epiponini). Cladistics : the International Journal of the Willi Hennig Society. 37: 423-441. PMID 34478190 DOI: 10.1111/cla.12446   
2021 Hopley T, Webber BL, Raghu S, Morin L, Byrne M. Revealing the Introduction History and Phylogenetic Relationships of in Australia. Frontiers in Plant Science. 12: 651805. PMID 34394135 DOI: 10.3389/fpls.2021.651805   
2021 Bernot JP, Boxshall GA, Crandall KA. A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism. Peerj. 9: e12034. PMID 34466296 DOI: 10.7717/peerj.12034   
2021 Qian H, Jin Y. Are phylogenies resolved at the genus level appropriate for studies on phylogenetic structure of species assemblages? Plant Diversity. 43: 255-263. PMID 34485767 DOI: 10.1016/j.pld.2020.11.005   
2021 Li R, Zhuang W, Wang C, El-Serehy H, Al-Farraj SA, Warren A, Hu X. Redescription and SSU rRNA gene-based phylogeny of an anaerobic ciliate, Kahl, 1931 (Ciliophora, Plagiopylea). International Journal of Systematic and Evolutionary Microbiology. 71. PMID 34427553 DOI: 10.1099/ijsem.0.004936   
2021 Sabbag AF, Tereza C Thomé M, Lyra ML, Brasileiro CA, Moriarty Lemmon E, Lemmon A, F B Haddad C. Sympatric and independently evolving lineages in the Thoropa miliaris - T. taophora species complex (Anura: Cycloramphidae). Molecular Phylogenetics and Evolution. 107220. PMID 34481948 DOI: 10.1016/j.ympev.2021.107220   
2021 Dai YT, Fan QX, Chen YR, Huang XC, Ouyang S, Wu XP. Complete maternal mitochondrial genome of the freshwater mussel (Bivalvia: Unionidae). Mitochondrial Dna. Part B, Resources. 6: 2575-2577. PMID 34377833 DOI: 10.1080/23802359.2021.1960215   
2021 Galindo LJ, López-García P, Torruella G, Karpov S, Moreira D. Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota. Nature Communications. 12: 4973. PMID 34404788 DOI: 10.1038/s41467-021-25308-w   
2021 M Lyra G, Iha C, Grassa CJ, Cai L, Zhang H, Lane C, Blouin N, Oliveira MC, Marcos de Castro Nunes J, Davis CC. Phylogenomics, divergence time estimation and trait evolution provide a new look into the Gracilariales (Rhodophyta). Molecular Phylogenetics and Evolution. 107294. PMID 34419587 DOI: 10.1016/j.ympev.2021.107294   
2021 Luo X, Bourland WA, Song W, Huang J. New contributions to the taxonomy of urostylid ciliates (Ciliophora, Hypotrichia), with establishment of a new genus and new species. European Journal of Protistology. 80: 125810. PMID 34303130 DOI: 10.1016/j.ejop.2021.125810   
2021 Armstrong GW, Cantrell K, Huang S, McDonald D, Haiminen N, Carrieri AP, Zhu Q, Gonzalez A, McGrath I, Beck K, Hakim D, Havulinna AS, Méric G, Niiranen T, Lahti L, et al. Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes. Genome Research. PMID 34479875 DOI: 10.1101/gr.275777.121   
2021 Xu LS, Chen YS. Phylogeny, origin, and dispersal of Dubyaea (Asteraceae) based on Hyb-Seq data. Molecular Phylogenetics and Evolution. 107289. PMID 34371187 DOI: 10.1016/j.ympev.2021.107289   
2021 Edwards HM, Rhodes J. Accounting for the Biological Complexity of Pathogenic Fungi in Phylogenetic Dating. Journal of Fungi (Basel, Switzerland). 7. PMID 34436200 DOI: 10.3390/jof7080661   
2021 Binici B, Şirin D, Taylan MS. Molecular genetics and phylogeny of Ephippigera species group of genus Saga Charpentier, 1825 (Orthoptera: Ensifera: Saginae) in Anatolia. Zootaxa. 4991: 331-342. PMID 34186844 DOI: 10.11646/zootaxa.4991.2.6   
2021 Zhang C, Yang R, Wu L, Luo C, Guo X, Deng Y, Zhou H, Zhang Y. Molecular phylogeny of the Anopheles hyrcanus group (Diptera: Culicidae) based on rDNA-ITS2 and mtDNA-COII. Parasites & Vectors. 14: 454. PMID 34488860 DOI: 10.1186/s13071-021-04971-4   
2021 McDonough MM, Ferguson AW, Dowler RC, Gompper ME, Maldonado JE. Phylogenomic systematics of the spotted skunks (Carnivora, Mephitidae, Spilogale): Additional species diversity and Pleistocene climate change as a major driver of diversification. Molecular Phylogenetics and Evolution. 107266. PMID 34302947 DOI: 10.1016/j.ympev.2021.107266