Todd Hampton Oakley, Ph.D. - Publications

Affiliations: 
Ecology Evolution Marine Biology University of California, Santa Barbara, Santa Barbara, CA, United States 
Area:
evolution, vision, invertebrate zoology, phylogenetics
Website:
http://www.lifesci.ucsb.edu/eemb/labs/oakley/

84 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Varney RM, Speiser DI, Cannon JT, Aguilar MA, Eernisse DJ, Oakley TH. A morphological basis for path-dependent evolution of visual systems. Science (New York, N.Y.). 383: 983-987. PMID 38422123 DOI: 10.1126/science.adg2689  0.743
2022 Vöcking O, Macias-Muñoz A, Jaeger SJ, Oakley TH. Deep Diversity: Extensive Variation in the Components of Complex Visual Systems across Animals. Cells. 11. PMID 36552730 DOI: 10.3390/cells11243966  0.324
2022 Garm A, Svaerke JE, Pontieri D, Oakley TH. Expression of Opsins of the Box Jellyfish Reveals the First Photopigment in Cnidarian Ocelli and Supports the Presence of Photoisomerases. Frontiers in Neuroanatomy. 16: 916510. PMID 35991966 DOI: 10.3389/fnana.2022.916510  0.329
2022 Ellis EA, Goodheart JA, Hensley NM, González VL, Reda NJ, Rivers TJ, Morin JG, Torres E, Gerrish GA, Oakley TH. Sexual signals persist over deep time: ancient co-option of bioluminescence for courtship displays in cypridinid ostracods. Systematic Biology. PMID 35984328 DOI: 10.1093/sysbio/syac057  0.747
2022 Drábková M, Kocot KM, Halanych KM, Oakley TH, Moroz LL, Cannon JT, Kuris A, Garcia-Vedrenne AE, Pankey MS, Ellis EA, Varney R, Štefka J, Zrzavý J. Different phylogenomic methods support monophyly of enigmatic 'Mesozoa' (Dicyemida + Orthonectida, Lophotrochozoa). Proceedings. Biological Sciences. 289: 20220683. PMID 35858055 DOI: 10.1098/rspb.2022.0683  0.758
2021 Picciani N, Kerlin JR, Jindrich K, Hensley NM, Gold DA, Oakley TH. Light modulated cnidocyte discharge predates the origins of eyes in Cnidaria. Ecology and Evolution. 11: 3933-3940. PMID 33976785 DOI: 10.1002/ece3.7280  0.702
2020 Hensley NM, Ellis EA, Leung NY, Coupart J, Mikhailovsky A, Taketa DA, Tessler M, Gruber DF, De Tomaso AW, Mitani Y, Rivers TJ, Gerrish GA, Torres E, Oakley TH. Selection, drift, and constraint in cypridinid luciferases and the diversification of bioluminescent signals in sea fireflies. Molecular Ecology. PMID 33031624 DOI: 10.1111/mec.15673  0.775
2020 Goodheart JA, Minsky G, Brynjegard-Bialik MN, Drummond MS, Munoz JD, Fallon TR, Schultz DT, Weng JK, Torres E, Oakley TH. Laboratory culture of the California Sea Firefly Vargula tsujii (Ostracoda: Cypridinidae): Developing a model system for the evolution of marine bioluminescence. Scientific Reports. 10: 10443. PMID 32591605 DOI: 10.1038/S41598-020-67209-W  0.344
2019 Swafford AJM, Oakley TH. Light-induced stress as a primary evolutionary driver of eye origins. Integrative and Comparative Biology. PMID 31539028 DOI: 10.1093/Icb/Icz064  0.434
2019 Mitani Y, Yasuno R, Futahashi R, Oakley TH, Ohmiya Y. Luciferase gene of a Caribbean fireworm (Syllidae) from Puerto Rico. Scientific Reports. 9: 13015. PMID 31506523 DOI: 10.1038/S41598-019-49538-7  0.36
2019 Juarez BH, Speiser DI, Oakley TH. Context-dependent evolution of ostracod morphology along the ecogeographical gradient of ocean depth. Evolution; International Journal of Organic Evolution. PMID 31025309 DOI: 10.1111/Evo.13748  0.426
2019 Hensley NM, Ellis EA, Gerrish GA, Torres E, Frawley JP, Oakley TH, Rivers TJ. Phenotypic evolution shaped by current enzyme function in the bioluminescent courtship signals of sea fireflies. Proceedings. Biological Sciences. 286: 20182621. PMID 30963873 DOI: 10.1098/Rspb.2018.2621  0.766
2019 Belcaid M, Casaburi G, McAnulty SJ, Schmidbaur H, Suria AM, Moriano-Gutierrez S, Pankey MS, Oakley TH, Kremer N, Koch EJ, Collins AJ, Nguyen H, Lek S, Goncharenko-Foster I, Minx P, et al. Symbiotic organs shaped by distinct modes of genome evolution in cephalopods. Proceedings of the National Academy of Sciences of the United States of America. PMID 30635418 DOI: 10.1073/Pnas.1817322116  0.357
2019 Peniston JH, Ellis EA, Churchill CKC, Ramirez MD, Oakley TH. Phylogenetic position of Alternochelata lizardensis Kornicker, 1982 within Rutidermatidae (Ostracoda: Myodocopida), with an investigation into its green coloration Journal of Crustacean Biology. 39: 559-566. DOI: 10.1093/Jcbiol/Ruz056  0.352
2018 Picciani N, Kerlin JR, Sierra N, Swafford AJM, Ramirez MD, Roberts NG, Cannon JT, Daly M, Oakley TH. Prolific Origination of Eyes in Cnidaria with Co-option of Non-visual Opsins. Current Biology : Cb. PMID 30033336 DOI: 10.1016/J.Cub.2018.05.055  0.744
2018 Jackrel SL, Narwani A, Bentlage B, Levine RB, Hietala DC, Savage PE, Oakley TH, Denef VJ, Cardinale BJ. Ecological engineering helps maximize function in algal oil production. Applied and Environmental Microbiology. PMID 29776927 DOI: 10.1128/Aem.00953-18  0.308
2018 Oakley T. Optical wonderlands: vision science from photons to philosophy Nature. 563: 182-183. DOI: 10.1038/D41586-018-07292-2  0.348
2017 Oakley TH. Furcation and Fusion: The phylogenetics of evolutionary novelty. Developmental Biology. PMID 28923487 DOI: 10.1016/J.Ydbio.2017.09.015  0.389
2017 Jeffery NW, Ellis EA, Oakley TH, Gregory TR. The genome sizes of ostracod crustaceans correlate with body size and evolutionary history, but not environment. The Journal of Heredity. PMID 28595313 DOI: 10.1093/Jhered/Esx055  0.321
2017 Tanner AR, Fuchs D, Winkelmann IE, Gilbert MT, Pankey MS, Ribeiro ÂM, Kocot KM, Halanych KM, Oakley TH, da Fonseca RR, Pisani D, Vinther J. Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution. Proceedings. Biological Sciences. 284. PMID 28250188 DOI: 10.1098/Rspb.2016.2818  0.677
2017 Narwani A, Bentlage B, Alexandrou MA, Fritschie KJ, Delwiche C, Oakley TH, Cardinale BJ. Ecological interactions and coexistence are predicted by gene expression similarity in freshwater green algae Journal of Ecology. 105: 580-591. DOI: 10.1111/1365-2745.12759  0.404
2016 Ramirez MD, Pairett AN, Pankey MS, Serb JM, Speiser DI, Swafford AJ, Oakley TH. The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins. Genome Biology and Evolution. 8: 3640-3652. PMID 28172965 DOI: 10.1093/Gbe/Evw248  0.462
2016 Ellis EA, Oakley TH. High Rates of Species Accumulation in Animals with Bioluminescent Courtship Displays. Current Biology : Cb. PMID 27345160 DOI: 10.1016/J.Cub.2016.05.043  0.38
2015 Stahl BA, Gross JB, Speiser DI, Oakley TH, Patel NH, Gould DB, Protas ME. A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus. Plos One. 10: e0140484. PMID 26462237 DOI: 10.1371/Journal.Pone.0140484  0.352
2015 Narwani A, Alexandrou MA, Herrin J, Vouaux A, Zhou C, Oakley TH, Cardinale BJ. Common Ancestry Is a Poor Predictor of Competitive Traits in Freshwater Green Algae. Plos One. 10: e0137085. PMID 26348482 DOI: 10.1371/Journal.Pone.0137085  0.373
2015 Henze MJ, Oakley TH. The Dynamic Evolutionary History of Pancrustacean Eyes and Opsins. Integrative and Comparative Biology. 55: 830-42. PMID 26319405 DOI: 10.1093/Icb/Icv100  0.454
2015 Battelle BA, Kempler KE, Saraf SR, Marten CE, Dugger DR, Speiser DI, Oakley TH. Opsins in Limulus eyes: characterization of three visible light-sensitive opsins unique to and co-expressed in median eye photoreceptors and a peropsin/RGR that is expressed in all eyes. The Journal of Experimental Biology. 218: 466-79. PMID 25524988 DOI: 10.1242/Jeb.116087  0.403
2015 Alexandrou MA, Cardinale BJ, Hall JD, Delwiche CF, Fritschie K, Narwani A, Venail PA, Bentlage B, Pankey MS, Oakley TH. Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae. Proceedings. Biological Sciences / the Royal Society. 282: 20141745. PMID 25473009 DOI: 10.1098/Rspb.2014.1745  0.391
2015 Naughton HR, Alexandrou MA, Oakley TH, Cardinale BJ. Phylogenetic distance does not predict competition in green algal communities Ecosphere. 6: art116. DOI: 10.1890/Es14-00502.1  0.364
2015 Oakley TH, Speiser DI. How Complexity Originates: The Evolution of Animal Eyes Annual Review of Ecology, Evolution, and Systematics. 46: 237-260. DOI: 10.1146/Annurev-Ecolsys-110512-135907  0.462
2015 Venail P, Gross K, Oakley TH, Narwani A, Allan E, Flombaum P, Isbell F, Joshi J, Reich PB, Tilman D, van Ruijven J, Cardinale BJ. Species richness, but not phylogenetic diversity, influences community biomass production and temporal stability in a re-examination of 16 grassland biodiversity studies Functional Ecology. 29: 615-626. DOI: 10.1111/1365-2435.12432  0.334
2014 Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, ... ... Oakley TH, et al. Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. Bmc Bioinformatics. 15: 350. PMID 25407802 DOI: 10.1186/S12859-014-0350-X  0.733
2014 Pankey MS, Minin VN, Imholte GC, Suchard MA, Oakley TH. Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid. Proceedings of the National Academy of Sciences of the United States of America. 111: E4736-42. PMID 25336755 DOI: 10.1073/Pnas.1416574111  0.382
2014 Marxen JC, Pick C, Oakley TH, Burmester T. Occurrence of hemocyanin in ostracod crustaceans. Journal of Molecular Evolution. 79: 3-11. PMID 25135304 DOI: 10.1007/S00239-014-9636-X  0.356
2014 Feuda R, Rota-Stabelli O, Oakley TH, Pisani D. The comb jelly opsins and the origins of animal phototransduction. Genome Biology and Evolution. 6: 1964-71. PMID 25062921 DOI: 10.1093/Gbe/Evu154  0.384
2014 Fritschie KJ, Cardinale BJ, Alexandrou MA, Oakley TH. Evolutionary history and the strength of species interactions: testing the phylogenetic limiting similarity hypothesis. Ecology. 95: 1407-17. PMID 25000771 DOI: 10.1890/13-0986.1  0.365
2014 Bielecki J, Zaharoff AK, Leung NY, Garm A, Oakley TH. Ocular and extraocular expression of opsins in the rhopalium of Tripedalia cystophora (Cnidaria: Cubozoa). Plos One. 9: e98870. PMID 24901369 DOI: 10.1371/Journal.Pone.0098870  0.407
2014 Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, ... ... Oakley T, et al. The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes. The Journal of Heredity. 105: 1-18. PMID 24336862 DOI: 10.1093/jhered/est084  0.564
2014 Peyer SM, Pankey MS, Oakley TH, McFall-Ngai MJ. Eye-specification genes in the bacterial light organ of the bobtail squid Euprymna scolopes, and their expression in response to symbiont cues. Mechanisms of Development. 131: 111-26. PMID 24157521 DOI: 10.1016/J.Mod.2013.09.004  0.4
2014 Venail PA, Narwani A, Fritschie K, Alexandrou MA, Oakley TH, Cardinale BJ. The influence of phylogenetic relatedness on species interactions among freshwater green algae in a mesocosm experiment Journal of Ecology. 102: 1288-1299. DOI: 10.1111/1365-2745.12271  0.352
2014 Speiser DI, DeMartini DG, Oakley TH. The shell-eyes of the chiton Acanthopleura granulata (Mollusca, Polyplacophora) use pheomelanin as a screening pigment Journal of Natural History. 48: 2899-2911. DOI: 10.1080/00222933.2014.959572  0.39
2013 Narwani A, Alexandrou MA, Oakley TH, Carroll IT, Cardinale BJ. Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae. Ecology Letters. 16: 1373-81. PMID 24112458 DOI: 10.1111/Ele.12182  0.381
2013 Venail PA, Alexandrou MA, Oakley TH, Cardinale BJ. Shared ancestry influences community stability by altering competitive interactions: evidence from a laboratory microcosm experiment using freshwater green algae. Proceedings. Biological Sciences / the Royal Society. 280: 20131548. PMID 23945692 DOI: 10.1098/Rspb.2013.1548  0.315
2013 Alexandrou MA, Swartz BA, Matzke NJ, Oakley TH. Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Molecular Phylogenetics and Evolution. 69: 514-23. PMID 23933489 DOI: 10.1016/J.Ympev.2013.07.026  0.35
2013 Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH. The evolution of complexity in the visual systems of stomatopods: insights from transcriptomics. Integrative and Comparative Biology. 53: 39-49. PMID 23727979 DOI: 10.1093/Icb/Ict060  0.422
2013 Speiser DI, Lampe RI, Lovdahl VR, Carrillo-Zazueta B, Rivera AS, Oakley TH. Evasion of predators contributes to the maintenance of male eyes in sexually dimorphic Euphilomedes ostracods (Crustacea). Integrative and Comparative Biology. 53: 78-88. PMID 23652199 DOI: 10.1093/Icb/Ict025  0.413
2013 Oakley TH, Wolfe JM, Lindgren AR, Zaharoff AK. Phylotranscriptomics to bring the understudied into the fold: monophyletic ostracoda, fossil placement, and pancrustacean phylogeny. Molecular Biology and Evolution. 30: 215-33. PMID 22977117 DOI: 10.1093/Molbev/Mss216  0.617
2012 Lindgren AR, Pankey MS, Hochberg FG, Oakley TH. A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment. Bmc Evolutionary Biology. 12: 129. PMID 22839506 DOI: 10.1186/1471-2148-12-129  0.41
2012 Rivera AS, Ozturk N, Fahey B, Plachetzki DC, Degnan BM, Sancar A, Oakley TH. Blue-light-receptive cryptochrome is expressed in a sponge eye lacking neurons and opsin. The Journal of Experimental Biology. 215: 1278-86. PMID 22442365 DOI: 10.1242/Jeb.067140  0.449
2012 Plachetzki DC, Fong CR, Oakley TH. Cnidocyte discharge is regulated by light and opsin-mediated phototransduction. Bmc Biology. 10: 17. PMID 22390726 DOI: 10.1186/1741-7007-10-17  0.37
2012 Syme AE, Oakley TH. Dispersal between shallow and abyssal seas and evolutionary loss and regain of compound eyes in cylindroleberidid ostracods: conflicting conclusions from different comparative methods. Systematic Biology. 61: 314-36. PMID 21865337 DOI: 10.1093/Sysbio/Syr085  0.453
2011 Ramirez MD, Speiser DI, Pankey MS, Oakley TH. Understanding the dermal light sense in the context of integrative photoreceptor cell biology. Visual Neuroscience. 28: 265-79. PMID 21736861 DOI: 10.1017/S0952523811000150  0.335
2011 Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, et al. The ecoresponsive genome of Daphnia pulex. Science (New York, N.Y.). 331: 555-61. PMID 21292972 DOI: 10.1126/Science.1197761  0.737
2010 Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, ... ... Oakley TH, et al. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature. 466: 720-6. PMID 20686567 DOI: 10.1038/Nature09201  0.365
2010 Rivera AS, Pankey MS, Plachetzki DC, Villacorta C, Syme AE, Serb JM, Omilian AR, Oakley TH. Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach. Bmc Evolutionary Biology. 10: 123. PMID 20433736 DOI: 10.1186/1471-2148-10-123  0.46
2010 Plachetzki DC, Fong CR, Oakley TH. The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway. Proceedings. Biological Sciences / the Royal Society. 277: 1963-9. PMID 20219739 DOI: 10.1098/Rspb.2009.1797  0.392
2010 Cadotte MW, Jonathan Davies T, Regetz J, Kembel SW, Cleland E, Oakley TH. Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology Letters. 13: 96-105. PMID 19903196 DOI: 10.1111/J.1461-0248.2009.01405.X  0.343
2009 Tong D, Rozas NS, Oakley TH, Mitchell J, Colley NJ, McFall-Ngai MJ. Evidence for light perception in a bioluminescent organ. Proceedings of the National Academy of Sciences of the United States of America. 106: 9836-41. PMID 19509343 DOI: 10.1073/Pnas.0904571106  0.326
2009 Cadotte MW, Cavender-Bares J, Tilman D, Oakley TH. Using phylogenetic, functional and trait diversity to understand patterns of plant community productivity. Plos One. 4: e5695. PMID 19479086 DOI: 10.1371/Journal.Pone.0005695  0.367
2009 Rivera AS, Oakley TH. Ontogeny of sexual dimorphism via tissue duplication in an ostracod (Crustacea). Evolution & Development. 11: 233-43. PMID 19245554 DOI: 10.1111/J.1525-142X.2009.00323.X  0.441
2008 Oakley TH, Rivera AS. Genomics and the evolutionary origins of nervous system complexity. Current Opinion in Genetics & Development. 18: 479-92. PMID 19152785 DOI: 10.1016/J.Gde.2008.12.002  0.362
2008 Cadotte MW, Cardinale BJ, Oakley TH. Evolutionary history and the effect of biodiversity on plant productivity. Proceedings of the National Academy of Sciences of the United States of America. 105: 17012-7. PMID 18971334 DOI: 10.1073/Pnas.0805962105  0.355
2008 Tinn O, Oakley TH. Erratic rates of molecular evolution and incongruence of fossil and molecular divergence time estimates in Ostracoda (Crustacea). Molecular Phylogenetics and Evolution. 48: 157-67. PMID 18482852 DOI: 10.1016/J.Ympev.2008.03.001  0.339
2008 Sakarya O, Kosik KS, Oakley TH. Reconstructing ancestral genome content based on symmetrical best alignments and Dollo parsimony. Bioinformatics (Oxford, England). 24: 606-12. PMID 18184685 DOI: 10.1093/Bioinformatics/Btn005  0.388
2008 Lum KE, Syme AE, Schwab AK, Oakley TH. Euphilomedes chupacabra (Ostracoda: Myodocopida: Philomedidae), a new demersal marine species from coastal Puerto Rico with male-biased vespertine swimming activity Zootaxa. 35-57. DOI: 10.11646/Zootaxa.1684.1.2  0.411
2008 Oakley TH, Pankey MS. Opening the “Black Box”: The Genetic and Biochemical Basis of Eye Evolution Evolution: Education and Outreach. 1: 390-402. DOI: 10.1007/S12052-008-0090-3  0.456
2007 Plachetzki DC, Oakley TH. Key transitions during the evolution of animal phototransduction: novelty, "tree-thinking," co-option, and co-duplication. Integrative and Comparative Biology. 47: 759-69. PMID 21669757 DOI: 10.1093/Icb/Icm050  0.405
2007 Oakley TH, Plachetzki DC, Rivera AS. Furcation, field-splitting, and the evolutionary origins of novelty in arthropod photoreceptors. Arthropod Structure & Development. 36: 386-400. PMID 18089117 DOI: 10.1016/J.Asd.2007.08.002  0.374
2007 Rose MR, Oakley TH. The new biology: beyond the Modern Synthesis. Biology Direct. 2: 30. PMID 18036242 DOI: 10.1186/1745-6150-2-30  0.318
2007 Plachetzki DC, Degnan BM, Oakley TH. The origins of novel protein interactions during animal opsin evolution. Plos One. 2: e1054. PMID 17940617 DOI: 10.1371/Journal.Pone.0001054  0.377
2007 Sakarya O, Armstrong KA, Adamska M, Adamski M, Wang IF, Tidor B, Degnan BM, Oakley TH, Kosik KS. A post-synaptic scaffold at the origin of the animal kingdom. Plos One. 2: e506. PMID 17551586 DOI: 10.1371/Journal.Pone.0000506  0.31
2007 Oakley TH. A review of Gene Sharing and Evolution: The Diversity of Protein Functions, by Joram Piatigorsky Evolution & Development. 9: 514-516. DOI: 10.1111/J.1525-142X.2007.00187.X  0.332
2006 Lee C, Blay S, Mooers AØ, Singh A, Oakley TH. CoMET: a Mesquite package for comparing models of continuous character evolution on phylogenies. Evolutionary Bioinformatics Online. 2: 183-6. PMID 19455211 DOI: 10.4137/Ebo.S0  0.383
2006 Oakley TH, Ostman B, Wilson AC. Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes. Proceedings of the National Academy of Sciences of the United States of America. 103: 11637-41. PMID 16864793 DOI: 10.1073/Pnas.0600750103  0.38
2005 Serb JM, Oakley TH. Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 27: 1158-66. PMID 16237676 DOI: 10.1002/Bies.20291  0.378
2005 Oakley TH. Myodocopa (Crustacea: Ostracoda) as models for evolutionary studies of light and vision: Multiple origins of bioluminescence and extreme sexual dimorphism Hydrobiologia. 538: 179-192. DOI: 10.1007/S10750-004-4961-5  0.476
2004 Oakley TH, Huber DR. Differential expression of duplicated opsin genes in two eyetypes of ostracod crustaceans. Journal of Molecular Evolution. 59: 239-49. PMID 15486697 DOI: 10.1007/S00239-004-2618-7  0.482
2004 Wang D, Oakley T, Mower J, Shimmin LC, Yim S, Honeycutt RL, Tsao H, Li WH. Molecular evolution of bat color vision genes. Molecular Biology and Evolution. 21: 295-302. PMID 14660703 DOI: 10.1093/Molbev/Msh015  0.423
2003 Oakley TH. On homology of arthropod compound eyes. Integrative and Comparative Biology. 43: 522-30. PMID 21680460 DOI: 10.1093/Icb/43.4.522  0.44
2003 Oakley TH. The eye as a replicating and diverging, modular developmental unit Trends in Ecology and Evolution. 18: 623-627. DOI: 10.1016/J.Tree.2003.09.005  0.468
2002 Oakley TH, Cunningham CW. Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences of the United States of America. 99: 1426-30. PMID 11818548 DOI: 10.1073/Pnas.032483599  0.731
2000 Oakley TH, Cunningham CW. Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny. Evolution; International Journal of Organic Evolution. 54: 397-405. PMID 10937216 DOI: 10.1111/J.0014-3820.2000.Tb00042.X  0.69
1999 Oakley TH, Phillips RB. Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa. Molecular Phylogenetics and Evolution. 11: 381-93. PMID 10196079 DOI: 10.1006/Mpev.1998.0599  0.364
1998 Cunningham CW, Omland KE, Oakley TH. Reconstructing ancestral character states: a critical reappraisal. Trends in Ecology & Evolution. 13: 361-6. PMID 21238344 DOI: 10.1016/S0169-5347(98)01382-2  0.67
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