David M. Hillis, Ph.D. - Publications

Affiliations: 
1985-1987 Department of Biology University of Miami, Coral Gables, FL 
 1987- Integrative Biology University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
phylogenetics, molecular evolution, computational biology
Website:
http://www.biosci.utexas.edu/ib/faculty/hillis.htm

147 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Chambers EA, Marshall TL, Hillis DM. The Importance of Contact Zones for Distinguishing Interspecific from Intraspecific Geographic Variation. Systematic Biology. PMID 35993885 DOI: 10.1093/sysbio/syac056  0.312
2021 Marshall TL, Chambers EA, Matz MV, Hillis DM. How mitonuclear discordance and geographic variation have confounded species boundaries in a widely studied snake. Molecular Phylogenetics and Evolution. 162: 107194. PMID 33940060 DOI: 10.1016/j.ympev.2021.107194  0.822
2020 Gray LN, Barley AJ, Hillis DM, Pavón-Vázquez CJ, Poe S, White BA. Does breeding season variation affect evolution of a sexual signaling trait in a tropical lizard clade? Ecology and Evolution. 10: 3738-3746. PMID 32313632 DOI: 10.1002/Ece3.6167  0.78
2019 Chambers EA, Hillis DM. The Multispecies Coalescent Over-splits Species in the Case of Geographically Widespread Taxa. Systematic Biology. PMID 31180508 DOI: 10.1093/Sysbio/Syz042  0.821
2019 Gao W, Sun YB, Zhou WW, Xiong ZJ, Chen L, Li H, Fu TT, Xu K, Xu W, Ma L, Chen YJ, Xiang XY, Zhou L, Zeng T, Zhang S, ... ... Hillis DM, et al. Genomic and transcriptomic investigations of the evolutionary transition from oviparity to viviparity. Proceedings of the National Academy of Sciences of the United States of America. 116: 3646-3655. PMID 30808754 DOI: 10.1073/Pnas.1816086116  0.335
2019 Devitt TJ, Wright AM, Cannatella DC, Hillis DM. Species delimitation in endangered groundwater salamanders: Implications for aquifer management and biodiversity conservation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30642970 DOI: 10.1073/Pnas.1815014116  0.805
2019 Bull JJ, Cunningham CW, Molineux IJ, Badgett MR, Hillis DM. EXPERIMENTAL MOLECULAR EVOLUTION OF BACTERIOPHAGE T7. Evolution; International Journal of Organic Evolution. 47: 993-1007. PMID 28564289 DOI: 10.1111/J.1558-5646.1993.Tb02130.X  0.689
2019 Hillis DM. Species Delimitation in Herpetology Journal of Herpetology. 53: 3. DOI: 10.1670/18-123  0.365
2018 Sun YB, Fu TT, Jin JQ, Murphy RW, Hillis DM, Zhang YP, Che J. Species groups distributed across elevational gradients reveal convergent and continuous genetic adaptation to high elevations. Proceedings of the National Academy of Sciences of the United States of America. PMID 30348757 DOI: 10.1073/Pnas.1813593115  0.386
2018 Li JT, Gao YD, Xie L, Deng C, Shi P, Guan ML, Huang S, Ren JL, Wu DD, Ding L, Huang ZY, Nie H, Humphreys DP, Hillis DM, Wang WZ, et al. Comparative genomic investigation of high-elevation adaptation in ectothermic snakes. Proceedings of the National Academy of Sciences of the United States of America. PMID 30065117 DOI: 10.1073/Pnas.1805348115  0.799
2017 Feng YJ, Blackburn DC, Liang D, Hillis DM, Wake DB, Cannatella DC, Zhang P. Phylogenomics reveals rapid, simultaneous diversification of three major clades of Gondwanan frogs at the Cretaceous-Paleogene boundary. Proceedings of the National Academy of Sciences of the United States of America. PMID 28673970 DOI: 10.1073/Pnas.1704632114  0.734
2017 Liebeskind BJ, Hofmann HA, Hillis DM, Zakon HH. Evolution of Animal Neural Systems Annual Review of Ecology, Evolution, and Systematics. 48: 377-398. DOI: 10.1146/Annurev-Ecolsys-110316-023048  0.757
2016 Li T, Yang J, Li Y, Cui Y, Xie Q, Bu W, Hillis DM. A Mitochondrial Genome of Rhyparochromidae (Hemiptera: Heteroptera) and a Comparative Analysis of Related Mitochondrial Genomes. Scientific Reports. 6: 35175. PMID 27756915 DOI: 10.1038/Srep35175  0.352
2016 Yuan ZY, Zhou WW, Chen X, Poyarkov NA, Chen HM, Jang-Liaw NH, Chou WH, Matzke NJ, Iizuka K, Min MS, Kuzmin SL, Zhang YP, Cannatella DC, Hillis DM, Che J. Spatiotemporal Diversification of the True Frogs (Genus Rana): A Historical Framework for a Widely Studied Group of Model Organisms. Systematic Biology. PMID 27288482 DOI: 10.1093/Sysbio/Syw055  0.727
2015 Liebeskind BJ, Hillis DM, Zakon HH, Hofmann HA. Complex Homology and the Evolution of Nervous Systems. Trends in Ecology & Evolution. PMID 26746806 DOI: 10.1016/J.Tree.2015.12.005  0.742
2015 Wright AM, Lloyd GT, Hillis DM. Modeling character change heterogeneity in phylogenetic analyses of morphology through the use of priors. Systematic Biology. PMID 26715586 DOI: 10.1093/Sysbio/Syv122  0.721
2015 Wright AM, Lyons KM, Brandley MC, Hillis DM. Which came first: The lizard or the egg? Robustness in phylogenetic reconstruction of ancestral states. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 324: 504-16. PMID 26227660 DOI: 10.1002/Jez.B.22642  0.786
2015 McTavish EJ, Hillis DM. How do SNP ascertainment schemes and population demographics affect inferences about population history? Bmc Genomics. 16: 266. PMID 25887858 DOI: 10.1186/S12864-015-1469-5  0.787
2015 Sun YB, Xiong ZJ, Xiang XY, Liu SP, Zhou WW, Tu XL, Zhong L, Wang L, Wu DD, Zhang BL, Zhu CL, Yang MM, Chen HM, Li F, Zhou L, ... ... Hillis DM, et al. Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes. Proceedings of the National Academy of Sciences of the United States of America. 112: E1257-62. PMID 25733869 DOI: 10.1073/Pnas.1501764112  0.306
2015 Liebeskind BJ, Hillis DM, Zakon HH. Convergence of ion channel genome content in early animal evolution. Proceedings of the National Academy of Sciences of the United States of America. 112: E846-51. PMID 25675537 DOI: 10.1073/Pnas.1501195112  0.752
2015 Sherratt E, Del Rosario Castañeda M, Garwood RJ, Mahler DL, Sanger TJ, Herrel A, De Queiroz K, Losos JB, Hillis DM. Amber fossils demonstrate deep-time stability of Caribbean lizard communities Proceedings of the National Academy of Sciences of the United States of America. 112: 9961-9966. DOI: 10.1073/pnas.1506516112  0.543
2014 Wright AM, Hillis DM. Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data. Plos One. 9: e109210. PMID 25279853 DOI: 10.1371/Journal.Pone.0109210  0.731
2014 Li T, Hua J, Wright AM, Cui Y, Xie Q, Bu W, Hillis DM. Long-branch attraction and the phylogeny of true water bugs (Hemiptera: Nepomorpha) as estimated from mitochondrial genomes. Bmc Evolutionary Biology. 14: 99. PMID 24884699 DOI: 10.1186/1471-2148-14-99  0.736
2014 McTavish EJ, Hillis DM. A Genomic Approach for Distinguishing between Recent and Ancient Admixture as Applied to Cattle. The Journal of Heredity. PMID 24510946 DOI: 10.1093/Jhered/Esu001  0.787
2014 Hillis DM, Pröhl H, Lips KR, Drew J, Webb JF, Bury RB, Stuart BL, Perry SM, Mitchell MA, Wake DB, Corti C. Evolution of paedomorphosis in plethodontid salamanders: ecological correlates and re-evolution of metamorphosis Copeia. 2014: 762-775. DOI: 10.1643/Ot-14-144  0.607
2013 Liebeskind BJ, Hillis DM, Zakon HH. Independent acquisition of sodium selectivity in bacterial and animal sodium channels. Current Biology : Cb. 23: R948-9. PMID 24200318 DOI: 10.1016/J.Cub.2013.09.025  0.727
2013 Hedtke SM, Morgan MJ, Cannatella DC, Hillis DM. Targeted enrichment: maximizing orthologous gene comparisons across deep evolutionary time. Plos One. 8: e67908. PMID 23844125 DOI: 10.1371/Journal.Pone.0067908  0.829
2013 Abrams AJ, Cannatella DC, Hillis DM, Sawyer SL. Recent host-shifts in ranaviruses: signatures of positive selection in the viral genome. The Journal of General Virology. 94: 2082-93. PMID 23784445 DOI: 10.1099/Vir.0.052837-0  0.799
2013 Zhang P, Liang D, Mao RL, Hillis DM, Wake DB, Cannatella DC. Efficient sequencing of Anuran mtDNAs and a mitogenomic exploration of the phylogeny and evolution of frogs. Molecular Biology and Evolution. 30: 1899-915. PMID 23666244 DOI: 10.1093/Molbev/Mst091  0.597
2013 McTavish EJ, Decker JE, Schnabel RD, Taylor JF, Hillis DM. New World cattle show ancestry from multiple independent domestication events. Proceedings of the National Academy of Sciences of the United States of America. 110: E1398-406. PMID 23530234 DOI: 10.1073/Pnas.1303367110  0.791
2013 Li JT, Li Y, Klaus S, Rao DQ, Hillis DM, Zhang YP. Diversification of rhacophorid frogs provides evidence for accelerated faunal exchange between India and Eurasia during the Oligocene. Proceedings of the National Academy of Sciences of the United States of America. 110: 3441-6. PMID 23401521 DOI: 10.1073/Pnas.1300881110  0.335
2012 Losos JB, Hillis DM, Greene HW. Evolution. Who speaks with a forked tongue? Science (New York, N.Y.). 338: 1428-9. PMID 23239723 DOI: 10.1126/Science.1232455  0.375
2012 Liebeskind BJ, Hillis DM, Zakon HH. Phylogeny unites animal sodium leak channels with fungal calcium channels in an ancient, voltage-insensitive clade. Molecular Biology and Evolution. 29: 3613-6. PMID 22821012 DOI: 10.1093/Molbev/Mss182  0.727
2012 Schönhuth S, Hillis DM, Neely DA, Lozano-Vilano L, Perdices A, Mayden RL. Phylogeny, diversity, and species delimitation of the North American Round-Nosed Minnows (Teleostei: Dionda), as inferred from mitochondrial and nuclear DNA sequences. Molecular Phylogenetics and Evolution. 62: 427-46. PMID 22056492 DOI: 10.1016/J.Ympev.2011.10.011  0.42
2011 Hedtke SM, Glaubrecht M, Hillis DM. Rare gene capture in predominantly androgenetic species. Proceedings of the National Academy of Sciences of the United States of America. 108: 9520-4. PMID 21606355 DOI: 10.1073/Pnas.1106742108  0.789
2011 Liebeskind BJ, Hillis DM, Zakon HH. Evolution of sodium channels predates the origin of nervous systems in animals. Proceedings of the National Academy of Sciences of the United States of America. 108: 9154-9. PMID 21576472 DOI: 10.1073/Pnas.1106363108  0.744
2011 Hedtke SM, Hillis DM. The potential role of androgenesis in cytoplasmic-nuclear phylogenetic discordance. Systematic Biology. 60: 87-96. PMID 21060067 DOI: 10.1093/Sysbio/Syq070  0.749
2010 Scaduto DI, Brown JM, Haaland WC, Zwickl DJ, Hillis DM, Metzker ML. Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 107: 21242-7. PMID 21078965 DOI: 10.1073/Pnas.1015673107  0.769
2010 Honeycutt RL, Hillis DM, Bickham JW. Biodiversity discovery and its importance to conservation Molecular Approaches in Natural Resource Conservation and Management. 1-34. DOI: 10.1017/CBO9780511777592.002  0.636
2009 Zakon HH, Jost MC, Zwickl DJ, Lu Y, Hillis DM. Molecular evolution of Na+ channels in teleost fishes. Integrative Zoology. 4: 64-74. PMID 21392277 DOI: 10.1111/J.1749-4877.2008.00136.X  0.774
2009 Schoch CL, Sung GH, López-Giráldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Gueidan C, Andrie RM, Trippe K, Ciufetti LM, Wynns A, ... ... Hillis DM, et al. The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Systematic Biology. 58: 224-39. PMID 20525580 DOI: 10.1093/Sysbio/Syp020  0.412
2009 Baird AB, Hillis DM, Patton JC, Bickham JW. Speciation by monobrachial centric fusions: a test of the model using nuclear DNA sequences from the bat genus Rhogeessa. Molecular Phylogenetics and Evolution. 50: 256-67. PMID 19038350 DOI: 10.1016/J.Ympev.2008.11.001  0.783
2009 Pauly GB, Hillis DM, Cannatella DC. Taxonomic freedom and the role of official lists of species names Herpetologica. 65: 115-128. DOI: 10.1655/08-031R1.1  0.782
2008 Zakon HH, Zwickl DJ, Lu Y, Hillis DM. Molecular evolution of communication signals in electric fish. The Journal of Experimental Biology. 211: 1814-8. PMID 18490397 DOI: 10.1242/Jeb.015982  0.786
2008 Schönhuth S, Doadrio I, Dominguez-Dominguez O, Hillis DM, Mayden RL. Molecular evolution of southern North American Cyprinidae (Actinopterygii), with the description of the new genus Tampichthys from central Mexico. Molecular Phylogenetics and Evolution. 47: 729-56. PMID 18353691 DOI: 10.1016/J.Ympev.2007.11.036  0.442
2008 Heath TA, Zwickl DJ, Kim J, Hillis DM. Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees. Systematic Biology. 57: 160-6. PMID 18300029 DOI: 10.1080/10635150701884640  0.767
2008 Garrick RC, Rowell DM, Simmons CS, Hillis DM, Sunnucks P. Fine-scale phylogeographic congruence despite demographic incongruence in two low-mobility saproxylic springtails. Evolution; International Journal of Organic Evolution. 62: 1103-18. PMID 18298648 DOI: 10.1111/J.1558-5646.2008.00349.X  0.392
2008 Hedtke SM, Stanger-Hall K, Baker RJ, Hillis DM. All-male asexuality: origin and maintenance of androgenesis in the Asian clam Corbicula. Evolution; International Journal of Organic Evolution. 62: 1119-36. PMID 18266987 DOI: 10.1111/J.1558-5646.2008.00344.X  0.81
2008 Jost MC, Hillis DM, Lu Y, Kyle JW, Fozzard HA, Zakon HH. Toxin-resistant sodium channels: parallel adaptive evolution across a complete gene family. Molecular Biology and Evolution. 25: 1016-24. PMID 18258611 DOI: 10.1093/Molbev/Msn025  0.794
2008 Heath TA, Hedtke SM, Hillis DM. Taxon sampling and the accuracy of phylogenetic analyses Journal of Systematics and Evolution. 46: 239-257. DOI: 10.3724/Sp.J.1002.2008.08016  0.798
2008 Baird AB, Hillis DM, Patton JC, Bickham JW. Evolutionary history of the genus Rhogeessa (Chiroptera: Vespertilionidae) as revealed by mitochondrial DNA sequences Journal of Mammalogy. 89: 744-754. DOI: 10.1644/07-Mamm-A-135R2.1  0.786
2007 Stanger-Hall KF, Lloyd JE, Hillis DM. Phylogeny of North American fireflies (Coleoptera: Lampyridae): implications for the evolution of light signals. Molecular Phylogenetics and Evolution. 45: 33-49. PMID 17644427 DOI: 10.1016/J.Ympev.2007.05.013  0.756
2007 Hillis DM. Asexual evolution: can species exist without sex? Current Biology : Cb. 17: R543-4. PMID 17637352 DOI: 10.1016/J.Cub.2007.05.015  0.378
2007 Garrick RC, Sands CJ, Rowell DM, Hillis DM, Sunnucks P. Catchments catch all: long-term population history of a giant springtail from the southeast Australian highlands--a multigene approach. Molecular Ecology. 16: 1865-82. PMID 17444898 DOI: 10.1111/J.1365-294X.2006.03165.X  0.38
2007 Hillis DM. Constraints in naming parts of the Tree of Life. Molecular Phylogenetics and Evolution. 42: 331-8. PMID 16997582 DOI: 10.1016/J.Ympev.2006.08.001  0.401
2006 Hedtke SM, Townsend TM, Hillis DM. Resolution of phylogenetic conflict in large data sets by increased taxon sampling. Systematic Biology. 55: 522-9. PMID 16861214 DOI: 10.1080/10635150600697358  0.789
2006 Bossuyt F, Brown RM, Hillis DM, Cannatella DC, Milinkovitch MC. Phylogeny and biogeography of a cosmopolitan frog radiation: Late cretaceous diversification resulted in continent-scale endemism in the family ranidae. Systematic Biology. 55: 579-94. PMID 16857652 DOI: 10.1080/10635150600812551  0.588
2006 Holloway AK, Cannatella DC, Gerhardt HC, Hillis DM. Polyploids with different origins and ancestors form a single sexual polyploid species. The American Naturalist. 167: E88-101. PMID 16670990 DOI: 10.1086/501079  0.738
2006 Zakon HH, Lu Y, Zwickl DJ, Hillis DM. Sodium channel genes and the evolution of diversity in communication signals of electric fishes: convergent molecular evolution. Proceedings of the National Academy of Sciences of the United States of America. 103: 3675-80. PMID 16505358 DOI: 10.1073/Pnas.0600160103  0.784
2006 Baird AB, Krejca JK, Reddell JR, Peden CE, Mahoney MJ, Hillis DM. Phylogeographic structure and color pattern variation among populations of Plethodon albagula on the Edwards Plateau of Central Texas Copeia. 760-768. DOI: 10.1643/0045-8511(2006)6[760:Psacpv]2.0.Co;2  0.793
2006 Hillis DM, Wilcox TP. Corrigendum to "Phylogeny of the New World true frogs (Rana)" [Mol. Phylogenet. Evol. 34 (2005) 299-314] (DOI:10.1016/j.ympev.2004.10.007) Molecular Phylogenetics and Evolution. 41: 735. DOI: 10.1016/J.Ympev.2004.10.024  0.763
2005 Hillis DM, Heath TA, St John K. Analysis and visualization of tree space. Systematic Biology. 54: 471-82. PMID 16012112 DOI: 10.1080/10635150590946961  0.783
2005 Hillis DM, Wilcox TP. Phylogeny of the New World true frogs (Rana). Molecular Phylogenetics and Evolution. 34: 299-314. PMID 15619443 DOI: 10.1016/J.Ympev.2004.10.007  0.778
2004 Pauly GB, Hillis DM, Cannatella DC. The history of a nearctic colonization: molecular phylogenetics and biogeography of the Nearctic toads (Bufo). Evolution; International Journal of Organic Evolution. 58: 2517-35. PMID 15612295 DOI: 10.1111/J.0014-3820.2004.Tb00881.X  0.748
2004 Wilcox TP, García de León FJ, Hendrickson DA, Hillis DM. Convergence among cave catfishes: long-branch attraction and a Bayesian relative rates test. Molecular Phylogenetics and Evolution. 31: 1101-13. PMID 15120403 DOI: 10.1016/J.Ympev.2003.11.006  0.807
2004 Mark Welch DB, Cummings MP, Hillis DM, Meselson M. Divergent gene copies in the asexual class Bdelloidea (Rotifera) separated before the bdelloid radiation or within bdelloid families. Proceedings of the National Academy of Sciences of the United States of America. 101: 1622-5. PMID 14747660 DOI: 10.1073/Pnas.2136686100  0.364
2003 Wiens JJ, Chippindale PT, Hillis DM. When are phylogenetic analyses misled by convergence? A case study in Texas cave salamanders. Systematic Biology. 52: 501-14. PMID 12857641 DOI: 10.1080/10635150309320  0.798
2003 Hillis DM, Pollock DD, McGuire JA, Zwickl DJ. Is sparse taxon sampling a problem for phylogenetic inference? Systematic Biology. 52: 124-6. PMID 12554446 DOI: 10.1080/10635150390132911  0.793
2002 Wilcox TP, Zwickl DJ, Heath TA, Hillis DM. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Molecular Phylogenetics and Evolution. 25: 361-71. PMID 12414316 DOI: 10.1016/S1055-7903(02)00244-0  0.796
2002 Brauer MJ, Holder MT, Dries LA, Zwickl DJ, Lewis PO, Hillis DM. Genetic algorithms and parallel processing in maximum-likelihood phylogeny inference. Molecular Biology and Evolution. 19: 1717-26. PMID 12270898 DOI: 10.1093/Oxfordjournals.Molbev.A003994  0.755
2002 Pollock DD, Zwickl DJ, McGuire JA, Hillis DM. Increased taxon sampling is advantageous for phylogenetic inference. Systematic Biology. 51: 664-71. PMID 12228008 DOI: 10.1080/10635150290102357  0.794
2002 Zwickl DJ, Hillis DM. Increased taxon sampling greatly reduces phylogenetic error. Systematic Biology. 51: 588-98. PMID 12228001 DOI: 10.1080/10635150290102339  0.786
2002 Dopman EB, Sword GA, Hillis DM. The importance of the ontogenetic niche in resource-associated divergence: evidence from a generalist grasshopper. Evolution; International Journal of Organic Evolution. 56: 731-40. PMID 12038531 DOI: 10.1111/J.0014-3820.2002.Tb01384.X  0.348
2001 Lopreato GF, Lu Y, Southwell A, Atkinson NS, Hillis DM, Wilcox TP, Zakon HH. Evolution and divergence of sodium channel genes in vertebrates. Proceedings of the National Academy of Sciences of the United States of America. 98: 7588-92. PMID 11416226 DOI: 10.1073/Pnas.131171798  0.758
2001 Hillis DM, Chamberlain DA, Wilcox TP, Chippindale PT. A new species of subterranean blind salamander (Plethodontidae: Hemidactyliini: Eurycea: Typhlomolge) from Austin, Texas, and a systematic revision of central Texas paedomorphic salamanders Herpetologica. 57: 266-280.  0.797
2000 Chippindale PT, Price AH, Wiens JJ, Hillis DM. Phylogenetic relationships and systematic revision of central Texas hemidactline plethodontid salamanders Herpetological Monographs. 1-80. DOI: 10.2307/1467045  0.78
2000 Hillis DM, Holder MT. Reconstructing the tree of life Trends in Ecology and Evolution. 47-50.  0.747
1999 Cantino PD, Bryant HN, de Queiroz K, Donoghue MJ, Eriksson T, Hillis DM, Lee MS. Species names in phylogenetic nomenclature. Systematic Biology. 48: 790-807. PMID 12066299 DOI: 10.1080/106351599260012  0.684
1999 Holder MT, Erdmann MV, Wilcox TP, Caldwell RL, Hillis DM. Two living species of coelacanths? Proceedings of the National Academy of Sciences of the United States of America. 96: 12616-20. PMID 10535971 DOI: 10.1073/Pnas.96.22.12616  0.797
1999 Hillis DM. SINEs of the perfect character. Proceedings of the National Academy of Sciences of the United States of America. 96: 9979-81. PMID 10468541 DOI: 10.1073/Pnas.96.18.9979  0.375
1998 Cunningham CW, Zhu H, Hillis DM. BEST-FIT MAXIMUM-LIKELIHOOD MODELS FOR PHYLOGENETIC INFERENCE: EMPIRICAL TESTS WITH KNOWN PHYLOGENIES. Evolution; International Journal of Organic Evolution. 52: 978-987. PMID 28565216 DOI: 10.1111/J.1558-5646.1998.Tb01827.X  0.634
1998 Hillis DM. Taxonomic sampling, phylogenetic accuracy, and investigator bias. Systematic Biology. 47: 3-8. PMID 12064238 DOI: 10.1080/106351598260987  0.316
1998 Cannatella DC, Hillis DM, Chippindale PT, Weigt L, Rand AS, Ryan MJ. Phylogeny of frogs of the Physalaemus pustulosus species group, with an examination of data incongruence. Systematic Biology. 47: 311-35. PMID 12064230 DOI: 10.1080/106351598260932  0.733
1998 Van Den Bussche RA, Baker RJ, Huelsenbeck JP, Hillis DM. Base compositional bias and phylogenetic analyses: a test of the "flying DNA" hypothesis. Molecular Phylogenetics and Evolution. 10: 408-16. PMID 10051393 DOI: 10.1006/Mpev.1998.0531  0.782
1998 Nekrutenko A, Hillis DM, Patton JC, Bradley RD, Baker RJ. Cytosolic isocitrate dehydrogenase in humans, mice, and voles and phylogenetic analysis of the enzyme family. Molecular Biology and Evolution. 15: 1674-84. PMID 9866202 DOI: 10.1093/Oxfordjournals.Molbev.A025894  0.645
1998 Chippindale PT, Price AH, Hillis DM. Systematic status of the San Marcos Salamander, Eurycea nana (Caudata: Plethodontidae) Copeia. 1046-1049. DOI: 10.2307/1447356  0.692
1998 Cunningham CW, Zhu H, Hillis DM. Best-fit maximum-likelihood models for phylogenetic inference: Empirical tests with known phylogenies Evolution. 52: 978-987.  0.715
1997 Bull JJ, Badgett MR, Wichman HA, Huelsenbeck JP, Hillis DM, Gulati A, Ho C, Molineux IJ. Exceptional convergent evolution in a virus. Genetics. 147: 1497-507. PMID 9409816  0.746
1997 Crandall KA, Hillis DM. Rhodopsin evolution in the dark. Nature. 387: 667-8. PMID 9192889 DOI: 10.1038/42628  0.549
1997 Bradley RD, Hillis DM. Recombinant DNA sequences generated by PCR amplification. Molecular Biology and Evolution. 14: 592-3. PMID 9159937 DOI: 10.1093/Oxfordjournals.Molbev.A025797  0.589
1997 Cunningham CW, Jeng K, Husti J, Badgett M, Molineux IJ, Hillis DM, Bull JJ. Parallel molecular evolution of deletions and nonsense mutations in bacteriophage T7. Molecular Biology and Evolution. 14: 113-6. PMID 9000760 DOI: 10.1093/Oxfordjournals.Molbev.A025697  0.704
1996 Halanych KM, Bacheller JD, Aguinaldo AM, Liva SM, Hillis DM, Lake JA. Response: lophophorate phylogeny. Science (New York, N.Y.). 272: 283. PMID 17791394 DOI: 10.1126/Science.272.5259.283  0.636
1996 Huelsenbeck JP, Hillis DM, Nielsen R. A Likelihood-Ratio Test of Monophyly Systematic Biology. 45: 546-558. DOI: 10.1093/Sysbio/45.4.546  0.735
1996 Ryan MJ, Dries LA, Batra P, Hillis DM. Male mate preferences in a gynogenetic species complex of Amazon mollies Animal Behaviour. 52: 1225-1236. DOI: 10.1006/Anbe.1996.0270  0.765
1996 Huelsenbeck JP, Hillis DM, Nielsen R. Likelihood-ratio test of monophyly Systematic Biology. 45: 546-558.  0.757
1995 Hillis DM, Huelsenbeck JP. Response. Science (New York, N.Y.). 267: 255-6. PMID 17791347 DOI: 10.1126/science.267.5195.255  0.651
1995 Halanych KM, Bacheller JD, Aguinaldo AM, Liva SM, Hillis DM, Lake JA. Evidence from 18S ribosomal DNA that the lophophorates are protostome animals. Science (New York, N.Y.). 267: 1641-3. PMID 7886451 DOI: 10.1126/Science.7886451  0.705
1995 Crother BI, Hillis DM. Nuclear Ribosomal DNA Restriction Sites, Phylogenetic Information, and the Phylogeny of Some Xenodontine (Colubridae) Snakes Journal of Herpetology. 29: 316. DOI: 10.2307/1564578  0.604
1995 Hillis DM. Approaches for assessing phylogenetic accuracy Systematic Biology. 44: 3-16. DOI: 10.1093/Sysbio/44.1.3  0.379
1995 Hillis DM, Huelsenbeck JP. Assessing molecular phylogenies [7] Science. 267: 255-256.  0.758
1994 Hillis DM, Huelsenbeck JP, Swofford DL. Hobgoblin of phylogenetics? Nature. 369: 363-4. PMID 8196763 DOI: 10.1038/369363A0  0.814
1994 Hillis DM, Huelsenbeck JP, Cunningham CW. Application and accuracy of molecular phylogenies. Science (New York, N.Y.). 264: 671-7. PMID 8171318 DOI: 10.1126/Science.8171318  0.791
1994 Hillis DM, Huelsenbeck JP. Support for dental HIV transmission. Nature. 369: 24-5. PMID 8164734 DOI: 10.1038/369024A0  0.683
1994 Hillis DM, Huelsenbeck JP. To tree the truth: biological and numerical simulation of phylogeny. Society of General Physiologists Series. 49: 55-67. PMID 7939904  0.684
1994 Hillis DM. Phylogenetic Searching of Molecular Data Bases Systematic Biology. 43: 461. DOI: 10.2307/2413683  0.305
1994 Hillis DM. Phylogenetic Searching of Molecular Data Bases Systematic Biology. 43: 461-463. DOI: 10.1093/Sysbio/43.3.461  0.305
1993 Dixon MT, Hillis DM. Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis. Molecular Biology and Evolution. 10: 256-67. PMID 8450759 DOI: 10.1093/Oxfordjournals.Molbev.A039998  0.668
1993 Bradley RD, Bull JJ, Johnson AD, Hillis DM. Origin of a novel allele in a mammalian hybrid zone. Proceedings of the National Academy of Sciences of the United States of America. 90: 8939-41. PMID 8415634 DOI: 10.1073/Pnas.90.19.8939  0.656
1993 Hillis DM, Allard MW, Miyamoto MM. Analysis of DNA sequence data: phylogenetic inference. Methods in Enzymology. 224: 456-87. PMID 7505382 DOI: 10.1016/0076-6879(93)24035-S  0.37
1993 Hillis DM, Ammerman LK, Dixon MT, de Sá RO, de Sa RO. Ribosomal DNA and the Phylogeny of Frogs Herpetological Monographs. 7: 118. DOI: 10.2307/1466955  0.798
1993 Cannatella DC, Hillis DM. Amphibian Relationships: Phylogenetic Analysis of Morphology and Molecules Herpetological Monographs. 7: 1. DOI: 10.2307/1466947  0.368
1993 Huelsenbeck JP, Hillis DM. Success of phylogenetic methods in the four-taxon case Systematic Biology. 42: 247-264. DOI: 10.1093/Sysbio/42.3.247  0.727
1993 Hillis DM, Bull JJ. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis Systematic Biology. 42: 182-192. DOI: 10.1093/Sysbio/42.2.182  0.533
1993 Hillis DM, Bull JJ, White ME, Badgett MR, Molineux IJ. Experimental approaches to phylogenetic analysis Systematic Biology. 42: 90-92. DOI: 10.1093/Sysbio/42.1.90  0.336
1992 Hillis DM, Bull JJ, White ME, Badgett MR, Molineux IJ. Experimental phylogenetics: generation of a known phylogeny. Science (New York, N.Y.). 255: 589-92. PMID 1736360  0.611
1992 Hillis DM, Huelsenbeck JP. Signal, noise, and reliability in molecular phylogenetic analyses. The Journal of Heredity. 83: 189-95. PMID 1624764 DOI: 10.1093/Oxfordjournals.Jhered.A111190  0.75
1992 Honeycutt RL, Hillis DM, Moritz C. An Anthology of Molecular Tidbits Evolution. 46: 1249. DOI: 10.2307/2409773  0.5
1992 LEE CS, McCOOL BA, MOORE JL, HILLIS DM, GILBERT LE. Phylogenetic study of heliconiine butterflies based on morphology and restriction analysis of ribosomal RNA genes Zoological Journal of the Linnean Society. 106: 17-31. DOI: 10.1111/J.1096-3642.1992.Tb01238.X  0.437
1992 Ammerman LK, Hillis DM. A molecular test of bat relationships: Monophyly or diphyly? Systematic Biology. 41: 222-232. DOI: 10.1093/Sysbio/41.2.222  0.731
1992 Huelsenbeck JP, Hillis DM. Rates of evolution and fossils in phylogenetic analysis: a computer simulation approach The Paleontological Society Special Publications. 6: 140-140. DOI: 10.1017/S2475262200007000  0.738
1991 Hillis DM, Moritz C, Porter CA, Baker RJ. Evidence for biased gene conversion in concerted evolution of ribosomal DNA. Science (New York, N.Y.). 251: 308-10. PMID 1987647 DOI: 10.1126/Science.1987647  0.507
1991 Hillis DM, Bull JJ. Of genes and genomes. Science (New York, N.Y.). 254: 528. PMID 1948027 DOI: 10.1126/Science.1948027  0.475
1991 Hillis DM, Dixon MT. Ribosomal DNA: molecular evolution and phylogenetic inference. The Quarterly Review of Biology. 66: 411-53. PMID 1784710 DOI: 10.1086/417338  0.704
1991 Hillis DM, Dixon MT, Jones AL. Minimal genetic variation in a morphologically diverse species (florida tree snail, Liguus fasciatus) Journal of Heredity. 82: 282-286. DOI: 10.1093/Oxfordjournals.Jhered.A111087  0.664
1991 Hillis DM, Dixon MT, Ammerman LK. The relationships of the coelacanth Latimeria chalumnae: evidence from sequences of vertebrate 28S ribosomal RNA genes Environmental Biology of Fishes. 32: 119-130. DOI: 10.1007/Bf00007448  0.803
1990 de Sá RO, Hillis DM. Phylogenetic relationships of the pipid frogs Xenopus and Silurana: an integration of ribosomal DNA and morphology. Molecular Biology and Evolution. 7: 365-76. PMID 2385174  0.664
1990 Mayden RL, Hillis DM. Natural History and Systematics of the Largemouth Shiner, Cyprinella bocagrande (Teleostei: Cypriniformes), with Comments on Conservation Status Copeia. 1990: 1004. DOI: 10.2307/1446483  0.346
1990 Platz JE, Clarkson RW, Rorabaugh JC, Hillis DM. Rana berlandieri: Recently Introduced Populations in Arizona and Southeastern California Copeia. 1990: 324. DOI: 10.2307/1446338  0.311
1990 Schmid M, Steinlein C, Friedl R, de Almeida CG, Haaf T, Hillis DM, Duellman WE. Chromosome banding in Amphibia. XV. Two types of Y chromosomes and heterochromatin hypervariabilty in Gastrotheca pseustes (Anura, Hylidae) Chromosoma. 99: 413-423. DOI: 10.1007/Bf01726693  0.524
1989 Hillis DM, Dixon MT. Vertebrate phylogeny: Evidence from 28S ribosomal DNA sequences The Hierarchy of Life. Molecules and Morphology in Phylogenetic Analysis: Proceedings From Nobel Symposium 70. Ics824. 355-367.  0.624
1988 Bull JJ, Hillis DM, O'Steen S. Mammalian ZFY sequences exist in reptiles regardless of sex-determining mechanism. Science (New York, N.Y.). 242: 567-9. PMID 3140382 DOI: 10.1126/Science.3140382  0.473
1988 Hillis DM, Davis SK. Ribosomal DNA: Intraspecific Polymorphism, Concerted Evolution, and Phylogeny Reconstruction Systematic Zoology. 37: 63. DOI: 10.2307/2413191  0.378
1988 Hillis DM. Systematics of the Rana pipiens complex: puzzle and paradigm Annual Review of Ecology and Systematics. Vol. 19. 39-63. DOI: 10.1146/Annurev.Es.19.110188.000351  0.321
1987 Hillis DM, Davis SK. Evolution of the 28S ribosomal RNA gene in anurans: regions of variability and their phylogenetic implications. Molecular Biology and Evolution. 4: 117-25. PMID 3447005 DOI: 10.1093/Oxfordjournals.Molbev.A040431  0.382
1987 Hillis DM, Collins JT, Bogart JP. Distribution of diploid and tetraploid species of gray tree frogs ( Hyla chrysoscelis and Hyla versicolor) in Kansas. American Midland Naturalist. 117: 214-217. DOI: 10.2307/2425724  0.349
1987 Hillis DM. Molecular versus morphological approaches to systematics Annual Review of Ecology and Systematics. Vol. 18. 23-42. DOI: 10.1146/Annurev.Es.18.110187.000323  0.363
1986 Hillis DM, Davis SK. EVOLUTION OF RIBOSOMAL DNA: FIFTY MILLION YEARS OF RECORDED HISTORY IN THE FROG GENUS RANA. Evolution; International Journal of Organic Evolution. 40: 1275-1288. PMID 28563503 DOI: 10.1111/J.1558-5646.1986.Tb05751.X  0.375
1986 Hillis DM, Simmons JE. Dynamic Change of a Zone of Parapatry between Two Species of Pholidobolus (Sauria: Gymnophthalmidae) Journal of Herpetology. 20: 85. DOI: 10.2307/1564130  0.34
1985 Hillis DM. Evolutionary Genetics of the Andean Lizard Genus Pholidobolus (Sauria: Gymnophthalmidae): Phylogeny, Biogeography, and a Comparison of Tree Construction Techniques Systematic Biology. 34: 109-126. DOI: 10.2307/Sysbio/34.2.109  0.431
1984 Hillis DM, Frost JS, Webb RG. A New Species of Frog of the Rana tarahumarae Group from Southwestern Mexico Copeia. 1984: 398. DOI: 10.2307/1445197  0.709
1984 Fitch HS, Hillis DM. The Anolis Dewlap: Interspecific Variability and Morphological Associations with Habitat Copeia. 1984: 315. DOI: 10.2307/1445187  0.366
1984 Hillis DM. Misuse and Modification of Nei's Genetic Distance Systematic Biology. 33: 238-240. DOI: 10.1093/Sysbio/33.2.238  0.309
1983 Hillis DM, Frost DR, Frost JS. Allocation and Distribution of Rana trilobata Mocquard Journal of Herpetology. 17: 73. DOI: 10.2307/1563785  0.757
1983 Hillis DM, Frost JS, Wright DA. Phylogeny and Biogeography of the Rana Pipiens Complex: A Biochemical Evaluation Systematic Biology. 32: 132-143. DOI: 10.1093/Sysbio/32.2.132  0.743
1982 Hillis DM, Patton JC. Morphological and Electrophoretic Evidence for Two Species of Corbicula (Bivalvia: Corbiculidae) in North America American Midland Naturalist. 108: 74. DOI: 10.2307/2425294  0.391
1982 Hillis DM. Morphological Differentiation and Adaptation of the Larvae of Rana berlandieri and Rana sphenocephala (Rana pipiens Complex) in Sympatry Copeia. 1982: 168. DOI: 10.2307/1444281  0.338
1981 Hillis DM. Premating Isolating Mechanisms among Three Species of the Rana pipiens Complex in Texas and Southern Oklahoma Copeia. 1981: 312. DOI: 10.2307/1444220  0.359
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