Clifford W. Cunningham, Ph.D. - Publications

Affiliations: 
Biology Duke University, Durham, NC 
Area:
evolution
Website:
http://www.biology.duke.edu/cunningham/

72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Bull JJ, Cunningham CW, Molineux IJ, Badgett MR, Hillis DM. EXPERIMENTAL MOLECULAR EVOLUTION OF BACTERIOPHAGE T7. Evolution; International Journal of Organic Evolution. 47: 993-1007. PMID 28564289 DOI: 10.1111/J.1558-5646.1993.Tb02130.X  0.679
2017 LaBella AL, Van Dover CL, Jollivet D, Cunningham CW. Gene flow between Atlantic and Pacific Ocean basins in three lineages of deep-sea clams (Bivalvia: Vesicomyidae: Pliocardiinae) and subsequent limited gene flow within the Atlantic Deep Sea Research Part Ii: Topical Studies in Oceanography. 137: 307-317. DOI: 10.1016/J.Dsr2.2016.08.013  0.581
2016 Cunningham C. Discovery of the first asteroid, ceres: Historical studies in asteroid research Discovery of the First Asteroid, Ceres: Historical Studies in Asteroid Research. 1-333. DOI: 10.1007/978-3-319-21777-2  0.405
2015 Knox RW, Demons ST, Cunningham CW. A Novel Method to Decontaminate Surgical Instruments for Operational and Austere Environments. Wilderness & Environmental Medicine. PMID 26165581 DOI: 10.1016/j.wem.2015.03.030  0.414
2015 Cunningham CW. Only break glass in case of war? Journal of Special Operations Medicine : a Peer Reviewed Journal For Sof Medical Professionals. 15: 90-2. PMID 25770804  0.388
2014 Metcalf MD, Rosicky AD, Hassan HE, Eddington ND, Coop A, Cunningham CW, Mercer SL. Opioids and efflux transporters. Part 4: influence of N-substitution on P-glycoprotein substrate activity of noroxymorphone analogues. Bioorganic & Medicinal Chemistry Letters. 24: 3592-5. PMID 24915880 DOI: 10.1016/J.Bmcl.2014.05.033  0.412
2012 Miglietta MP, Cunningham CW. Evolution of life cycle, colony morphology, and host specificity in the family Hydractiniidae (Hydrozoa, Cnidaria). Evolution; International Journal of Organic Evolution. 66: 3876-901. PMID 23206144 DOI: 10.1111/J.1558-5646.2012.01717.X  0.578
2012 Dexter KG, Terborgh JW, Cunningham CW. Historical effects on beta diversity and community assembly in Amazonian trees. Proceedings of the National Academy of Sciences of the United States of America. 109: 7787-92. PMID 22547831 DOI: 10.1073/Pnas.1203523109  0.578
2011 Thaler AD, Zelnio K, Saleu W, Schultz TF, Carlsson J, Cunningham C, Vrijenhoek RC, Van Dover CL. The spatial scale of genetic subdivision in populations of Ifremeria nautilei, a hydrothermal-vent gastropod from the southwest Pacific. Bmc Evolutionary Biology. 11: 372. PMID 22192622 DOI: 10.1186/1471-2148-11-372  0.565
2010 Miglietta MP, McNally L, Cunningham CW. Evolution of calcium-carbonate skeletons in the Hydractiniidae. Integrative and Comparative Biology. 50: 428-35. PMID 21558213 DOI: 10.1093/Icb/Icq102  0.574
2010 Regier JC, Shultz JW, Zwick A, Hussey A, Ball B, Wetzer R, Martin JW, Cunningham CW. Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences. Nature. 463: 1079-83. PMID 20147900 DOI: 10.1038/Nature08742  0.635
2010 Dexter KG, Pennington TD, Cunningham CW. Using DNA to assess errors in tropical tree identifications: How often are ecologists wrong and when does it matter? Ecological Monographs. 80: 267-286. DOI: 10.1890/09-0267.1  0.581
2009 Miglietta MP, Schuchert P, Cunningham CW. Reconciling genealogical and morphological species in a worldwide study of the Family Hydractiniidae (Cnidaria, Hydrozoa) Zoologica Scripta. 38: 403-430. DOI: 10.1111/J.1463-6409.2008.00376.X  0.589
2009 Cunningham C. Ever since Gould Trends in Ecology & Evolution. 24: 645-646. DOI: 10.1016/J.Tree.2009.07.010  0.517
2008 Cunningham CW. Lessons learned from coordinating research on the North Atlantic (CORONA). Ecology. 89: S1-2. PMID 19097480 DOI: 10.1890/08-1533.1  0.464
2008 Regier JC, Shultz JW, Ganley AR, Hussey A, Shi D, Ball B, Zwick A, Stajich JE, Cummings MP, Martin JW, Cunningham CW. Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Systematic Biology. 57: 920-38. PMID 19085333 DOI: 10.1080/10635150802570791  0.594
2008 Lindner A, Cairns SD, Cunningham CW. From offshore to onshore: multiple origins of shallow-water corals from deep-sea ancestors. Plos One. 3: e2429. PMID 18560569 DOI: 10.1371/Journal.Pone.0002429  0.51
2008 Percy DM, Garver AM, Wagner WL, James HF, Cunningham CW, Miller SE, Fleischer RC. Progressive island colonization and ancient origin of Hawaiian Metrosideros (Myrtaceae). Proceedings. Biological Sciences / the Royal Society. 275: 1479-90. PMID 18426752 DOI: 10.1098/Rspb.2008.0191  0.603
2008 Bigg GR, Cunningham CW, Ottersen G, Pogson GH, Wadley MR, Williamson P. Ice-age survival of Atlantic cod: agreement between palaeoecology models and genetics. Proceedings. Biological Sciences / the Royal Society. 275: 163-72. PMID 17999951 DOI: 10.1098/Rspb.2007.1153  0.59
2008 Cunningham CW. How to use genetic data to distinguish between natural and human-mediated introduction of Littorina littorea to North America Biological Invasions. 10: 1-6. DOI: 10.1007/S10530-007-9099-8  0.599
2007 Riginos C, Cunningham CW. Hybridization in postglacial marine habitats. Molecular Ecology. 16: 3971-2. PMID 17894754 DOI: 10.1111/J.1365-294X.2007.03505.X  0.571
2006 Hickerson MJ, Cunningham CW. Nearshore fish (Pholis gunnellus) persists across the North Atlantic through multiple glacial episodes. Molecular Ecology. 15: 4095-107. PMID 17054505 DOI: 10.1111/J.1365-294X.2006.03085.X  0.748
2006 Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, et al. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). Omics : a Journal of Integrative Biology. 10: 231-7. PMID 16901231 DOI: 10.1089/Omi.2006.10.231  0.556
2005 Emlen DJ, Marangelo J, Ball B, Cunningham CW. Diversity in the weapons of sexual selection: horn evolution in the beetle genus Onthophagus (Coleoptera: Scarabaeidae). Evolution; International Journal of Organic Evolution. 59: 1060-84. PMID 16136805 DOI: 10.1554/04-642  0.576
2005 Hickerson MJ, Cunningham CW. Contrasting quaternary histories in an ecologically divergent sister pair of low-dispersing intertidal fish (Xiphister) revealed by multilocus DNA analysis. Evolution; International Journal of Organic Evolution. 59: 344-60. PMID 15807420 DOI: 10.1111/J.0014-3820.2005.Tb00994.X  0.742
2005 Wares JP, Cunningham CW. Diversification before the most recent glaciation in Balanus glandula. The Biological Bulletin. 208: 60-8. PMID 15713813 DOI: 10.2307/3593101  0.598
2005 Riginos C, Cunningham CW. Local adaptation and species segregation in two mussel (Mytilus edulis x Mytilus trossulus) hybrid zones. Molecular Ecology. 14: 381-400. PMID 15660932 DOI: 10.1111/J.1365-294X.2004.02379.X  0.545
2005 Govindarajan AF, Halanych KM, Cunningham CW. Mitochondrial evolution and phylogeography in the hydrozoan Obelia geniculata (Cnidaria) Marine Biology. 146: 213-222. DOI: 10.1007/S00227-004-1434-3  0.76
2005 Govindarajan AF, Halanych KM, Cunningham CW. Mitochondrial evolution and phylogeography in the hydrozoan Obelia geniculata (Cnidaria) Marine Biology. 146: 213-222. DOI: 10.1007/S00227-004-1434-3  0.76
2005 Cunningham C. The right time for synthesis in evolutionary biology Bioscience. 55: 99.  0.425
2004 Riginos C, Hickerson MJ, Henzler CM, Cunningham CW. Differential patterns of male and female mtDNA exchange across the Atlantic Ocean in the blue mussel, Mytilus edulis. Evolution; International Journal of Organic Evolution. 58: 2438-51. PMID 15612287 DOI: 10.1111/J.0014-3820.2004.Tb00873.X  0.726
2002 Hahn MW, Rausher MD, Cunningham CW. Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7. Genetics. 161: 11-20. PMID 12019219  0.495
2002 Buckley TR, Cunningham CW. The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support. Molecular Biology and Evolution. 19: 394-405. PMID 11919280 DOI: 10.1093/Oxfordjournals.Molbev.A004094  0.556
2002 Morrison CL, Harvey AW, Lavery S, Tieu K, Huang Y, Cunningham CW. Mitochondrial gene rearrangements confirm the parallel evolution of the crab-like form. Proceedings. Biological Sciences / the Royal Society. 269: 345-50. PMID 11886621 DOI: 10.1098/Rspb.2001.1886  0.607
2002 Riginos C, Sukhdeo K, Cunningham CW. Evidence for selection at multiple allozyme loci across a mussel hybrid zone. Molecular Biology and Evolution. 19: 347-51. PMID 11861894 DOI: 10.1093/Oxfordjournals.Molbev.A004088  0.555
2002 Oakley TH, Cunningham CW. Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences of the United States of America. 99: 1426-30. PMID 11818548 DOI: 10.1073/Pnas.032483599  0.667
2002 Tudge CC, Cunningham CW. Molecular phylogeny of the mud lobsters and mud shrimps (Crustacea: Decapoda: Thalassinidea) using nuclear 18S rDNA and mitochondrial 16S rDNA Invertebrate Systematics. 16: 839-847. DOI: 10.1071/Is02012  0.598
2002 Wares JP, Goldwater DS, Kong BY, Cunningham CW. Refuting a controversial case of a human-mediated marine species introduction Ecology Letters. 5: 577-584. DOI: 10.1046/J.1461-0248.2002.00359.X  0.588
2002 Young AM, Torres C, Mack JE, Cunningham CW. Morphological and genetic evidence for vicariance and refugium in Atlantic and Gulf of Mexico populations of the hermit crab Pagurus longicarpus Marine Biology. 140: 1059-1066. DOI: 10.1007/S00227-002-0780-2  0.568
2001 Wares JP, Cunningham CW. Phylogeography and historical ecology of the North Atlantic intertidal. Evolution; International Journal of Organic Evolution. 55: 2455-69. PMID 11831661 DOI: 10.1554/0014-3820(2001)055[2455:Paheot]2.0.Co;2  0.625
2001 Wares JP, Gaines SD, Cunningham CW. A comparative study of asymmetric migration events across a marine biogeographic boundary. Evolution; International Journal of Organic Evolution. 55: 295-306. PMID 11308087 DOI: 10.1111/J.0014-3820.2001.Tb01294.X  0.619
2000 Oakley TH, Cunningham CW. Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny. Evolution; International Journal of Organic Evolution. 54: 397-405. PMID 10937216 DOI: 10.1111/J.0014-3820.2000.Tb00042.X  0.707
2000 Hickerson MJ, Cunningham CW. Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, anomura). Molecular Biology and Evolution. 17: 639-44. PMID 10742054 DOI: 10.1093/Oxfordjournals.Molbev.A026342  0.72
1999 Kim J, Kim W, Cunningham CW. A new perspective on lower metazoan relationships from 18S rDNA sequences. Molecular Biology and Evolution. 16: 423-7. PMID 10331269 DOI: 10.1093/Oxfordjournals.Molbev.A026124  0.533
1999 Cunningham CW. Some limitations of ancestral character-state reconstruction when testing evolutionary hypotheses Systematic Biology. 48: 665-674. DOI: 10.1080/106351599260238  0.557
1998 Cunningham CW, Zhu H, Hillis DM. BEST-FIT MAXIMUM-LIKELIHOOD MODELS FOR PHYLOGENETIC INFERENCE: EMPIRICAL TESTS WITH KNOWN PHYLOGENIES. Evolution; International Journal of Organic Evolution. 52: 978-987. PMID 28565216 DOI: 10.1111/J.1558-5646.1998.Tb01827.X  0.682
1998 Cunningham CW, Omland KE, Oakley TH. Reconstructing ancestral character states: a critical reappraisal. Trends in Ecology & Evolution. 13: 361-6. PMID 21238344 DOI: 10.1016/S0169-5347(98)01382-2  0.689
1998 Stanger-Hall K, Cunningham CW. Support for a monophyletic lemuriformes: overcoming incongruence between data partitions. Molecular Biology and Evolution. 15: 1572-7. PMID 12572621 DOI: 10.1093/Oxfordjournals.Molbev.A025885  0.777
1998 Cunningham CW, Zhu H, Hillis DM. Best-fit maximum-likelihood models for phylogenetic inference: Empirical tests with known phylogenies Evolution. 52: 978-987.  0.644
1998 Cunningham CW, Zhu H, Hillis DM. Best-fit maximum-likelihood models for phylogenetic inference: Empirical tests with known phylogenies Evolution. 52: 978-987.  0.644
1997 Cunningham CW. Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods. Systematic Biology. 46: 464-78. PMID 11975330 DOI: 10.1093/Sysbio/46.3.464  0.58
1997 Cunningham CW. Can three incongruence tests predict when data should be combined? Molecular Biology and Evolution. 14: 733-40. PMID 9214746 DOI: 10.1093/Oxfordjournals.Molbev.A025813  0.562
1997 Cunningham CW, Jeng K, Husti J, Badgett M, Molineux IJ, Hillis DM, Bull JJ. Parallel molecular evolution of deletions and nonsense mutations in bacteriophage T7. Molecular Biology and Evolution. 14: 113-6. PMID 9000760 DOI: 10.1093/Oxfordjournals.Molbev.A025697  0.687
1996 Huelsenbeck JP, Bull JJ, Cunningham CW. Reply from j.p. Huelsenbeck, j.j. Bull and C.w. Cunningham. Trends in Ecology & Evolution. 11: 335. PMID 21237868 DOI: 10.1016/S0169-5347(96)91643-2  0.637
1996 Huelsenbeck JP, Bull JJ, Cunningham CW. Combining data in phylogenetic analysis. Trends in Ecology & Evolution. 11: 152-8. PMID 21237790 DOI: 10.1016/0169-5347(96)10006-9  0.717
1995 Bridge D, Cunningham CW, DeSalle R, Buss LW. Class-level relationships in the phylum Cnidaria: molecular and morphological evidence. Molecular Biology and Evolution. 12: 679-89. PMID 7659022 DOI: 10.1093/Oxfordjournals.Molbev.A040246  0.599
1994 Hillis DM, Huelsenbeck JP, Cunningham CW. Application and accuracy of molecular phylogenies. Science (New York, N.Y.). 264: 671-7. PMID 8171318 DOI: 10.1126/Science.8171318  0.742
1994 Huelsenbeck JP, Swofford DL, Cunningham CW, Bull JJ, Waddell PJ. Is character weighting a panacea for the problem of data heterogeneity in phylogenetic analysis? Systematic Biology. 43: 288-291. DOI: 10.1093/Sysbio/43.2.288  0.764
1993 Lessios HA, Cunningham CW. The evolution of gametic incompatibility in neotropical Echinometra: A reply to McClary Evolution. 47: 1883-1885. DOI: 10.1111/J.1558-5646.1993.Tb01277.X  0.576
1993 Bull JJ, Huelsenbeck JP, Cunningham CW, Swofford DL, Waddell PJ. Partitioning and combining data in phylogenetic analysis Systematic Biology. 42: 384-397. DOI: 10.1093/Sysbio/42.3.384  0.754
1993 Cunningham CW, Buss LW. Molecular evidence for multiple episodes of paedomorphosis in the family Hydractiniidae Biochemical Systematics and Ecology. 21: 57-69. DOI: 10.1016/0305-1978(93)90009-G  0.536
1993 Cunningham CW, Buss LW. Molecular evidence for multiple episodes of paedomorphosis in the family Hydractiniidae Biochemical Systematics and Ecology. 21: 57-69. DOI: 10.1016/0305-1978(93)90009-G  0.536
1992 Cunningham CW, Blackstone NW, Buss LW. Evolution of king crabs from hermit crab ancestors. Nature. 355: 539-42. PMID 1741031 DOI: 10.1038/355539A0  0.564
1992 Bridge D, Cunningham CW, Schierwater B, DeSalle R, Buss LW. Class-level relationships in the phylum Cnidaria: evidence from mitochondrial genome structure. Proceedings of the National Academy of Sciences of the United States of America. 89: 8750-3. PMID 1356268 DOI: 10.1073/Pnas.89.18.8750  0.569
1991 Cunningham CW, Buss LW, Anderson C. MOLECULAR AND GEOLOGIC EVIDENCE OF SHARED HISTORY BETWEEN HERMIT CRABS AND THE SYMBIOTIC GENUS HYDRACTINIA. Evolution; International Journal of Organic Evolution. 45: 1301-1316. PMID 28563827 DOI: 10.1111/J.1558-5646.1991.Tb02637.X  0.598
1991 Cunningham CW, Buss LW, Anderson C. Molecular and geologic evidence of shared history between hermit crabs and the symbiotic genus Hydractinia Evolution. 45: 1301-1316.  0.503
1991 Cunningham CW, Buss LW, Anderson C. Molecular and geologic evidence of shared history between hermit crabs and the symbiotic genus Hydractinia Evolution. 45: 1301-1316.  0.503
1990 Lessios HA, Cunningham CW. Gametic incompatibility between species of the sea urchin Echinometra on the two sides of the Isthmus of Panama Evolution. 44: 933-941. DOI: 10.1111/J.1558-5646.1990.Tb03815.X  0.558
1990 CUNNINGHAM CW, BURNS GR, MCKEE V. ChemInform Abstract: A New Polyhalogen Network for Bromine, Br2- 10. Cheminform. 21. DOI: 10.1002/CHIN.199020025  0.396
1989 Cunningham CW, Burns GR, McKee V. Photochromic formazans: X-ray crystal structure magnetic resonance and Raman spectra of 3-methyl-1,5-diphenylformazan and 3-t-butyl-1,5- diphenylformazan Journal of the Chemical Society, Perkin Transactions 2. 1429-1436.  0.384
1987 Yund PO, Cunningham CW, Buss LW. Recruitment and postrecruitment interactions in a colonial hydroid. Ecology. 68: 971-982. DOI: 10.2307/1938368  0.519
1981 Bertness MD, Cunningham C. Crab shell-crushing predation and gastropod architectural defense Journal of Experimental Marine Biology and Ecology. 50: 213-230. DOI: 10.1016/0022-0981(81)90051-4  0.513
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