Clifford W. Cunningham, Ph.D. - Publications

Affiliations: 
Biology Duke University, Durham, NC 
Area:
evolution
Website:
http://www.biology.duke.edu/cunningham/

63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2012 Miglietta MP, Cunningham CW. Evolution of life cycle, colony morphology, and host specificity in the family Hydractiniidae (Hydrozoa, Cnidaria). Evolution; International Journal of Organic Evolution. 66: 3876-901. PMID 23206144 DOI: 10.1111/j.1558-5646.2012.01717.x  1
2012 Dexter KG, Terborgh JW, Cunningham CW. Historical effects on beta diversity and community assembly in Amazonian trees. Proceedings of the National Academy of Sciences of the United States of America. 109: 7787-92. PMID 22547831 DOI: 10.1073/pnas.1203523109  1
2011 Thaler AD, Zelnio K, Saleu W, Schultz TF, Carlsson J, Cunningham C, Vrijenhoek RC, Van Dover CL. The spatial scale of genetic subdivision in populations of Ifremeria nautilei, a hydrothermal-vent gastropod from the southwest Pacific. Bmc Evolutionary Biology. 11: 372. PMID 22192622 DOI: 10.1186/1471-2148-11-372  1
2010 Miglietta MP, McNally L, Cunningham CW. Evolution of calcium-carbonate skeletons in the Hydractiniidae. Integrative and Comparative Biology. 50: 428-35. PMID 21558213 DOI: 10.1093/icb/icq102  1
2010 Regier JC, Shultz JW, Zwick A, Hussey A, Ball B, Wetzer R, Martin JW, Cunningham CW. Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences. Nature. 463: 1079-83. PMID 20147900 DOI: 10.1038/nature08742  1
2010 Dexter KG, Pennington TD, Cunningham CW. Using DNA to assess errors in tropical tree identifications: How often are ecologists wrong and when does it matter? Ecological Monographs. 80: 267-286. DOI: 10.1890/09-0267.1  1
2009 Miglietta MP, Schuchert P, Cunningham CW. Reconciling genealogical and morphological species in a worldwide study of the Family Hydractiniidae (Cnidaria, Hydrozoa) Zoologica Scripta. 38: 403-430. DOI: 10.1111/j.1463-6409.2008.00376.x  1
2008 Cunningham CW. Lessons learned from coordinating research on the North Atlantic (CORONA). Ecology. 89: S1-2. PMID 19097480 DOI: 10.1890/08-1533.1  1
2008 Regier JC, Shultz JW, Ganley AR, Hussey A, Shi D, Ball B, Zwick A, Stajich JE, Cummings MP, Martin JW, Cunningham CW. Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Systematic Biology. 57: 920-38. PMID 19085333 DOI: 10.1080/10635150802570791  1
2008 Lindner A, Cairns SD, Cunningham CW. From offshore to onshore: multiple origins of shallow-water corals from deep-sea ancestors. Plos One. 3: e2429. PMID 18560569 DOI: 10.1371/journal.pone.0002429  1
2008 Percy DM, Garver AM, Wagner WL, James HF, Cunningham CW, Miller SE, Fleischer RC. Progressive island colonization and ancient origin of Hawaiian Metrosideros (Myrtaceae). Proceedings. Biological Sciences / the Royal Society. 275: 1479-90. PMID 18426752 DOI: 10.1098/rspb.2008.0191  1
2008 Bigg GR, Cunningham CW, Ottersen G, Pogson GH, Wadley MR, Williamson P. Ice-age survival of Atlantic cod: agreement between palaeoecology models and genetics. Proceedings. Biological Sciences / the Royal Society. 275: 163-72. PMID 17999951 DOI: 10.1098/rspb.2007.1153  1
2008 Cunningham CW. How to use genetic data to distinguish between natural and human-mediated introduction of Littorina littorea to North America Biological Invasions. 10: 1-6. DOI: 10.1007/s10530-007-9099-8  1
2007 Riginos C, Cunningham CW. Hybridization in postglacial marine habitats. Molecular Ecology. 16: 3971-2. PMID 17894754 DOI: 10.1111/j.1365-294X.2007.03505.x  1
2006 Hickerson MJ, Cunningham CW. Nearshore fish (Pholis gunnellus) persists across the North Atlantic through multiple glacial episodes. Molecular Ecology. 15: 4095-107. PMID 17054505 DOI: 10.1111/j.1365-294X.2006.03085.x  1
2006 Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, et al. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). Omics : a Journal of Integrative Biology. 10: 231-7. PMID 16901231 DOI: 10.1089/omi.2006.10.231  1
2005 Emlen DJ, Marangelo J, Ball B, Cunningham CW. Diversity in the weapons of sexual selection: horn evolution in the beetle genus Onthophagus (Coleoptera: Scarabaeidae). Evolution; International Journal of Organic Evolution. 59: 1060-84. PMID 16136805  1
2005 Hickerson MJ, Cunningham CW. Contrasting quaternary histories in an ecologically divergent sister pair of low-dispersing intertidal fish (Xiphister) revealed by multilocus DNA analysis. Evolution; International Journal of Organic Evolution. 59: 344-60. PMID 15807420  1
2005 Wares JP, Cunningham CW. Diversification before the most recent glaciation in Balanus glandula. The Biological Bulletin. 208: 60-8. PMID 15713813  1
2005 Riginos C, Cunningham CW. Local adaptation and species segregation in two mussel (Mytilus edulis x Mytilus trossulus) hybrid zones. Molecular Ecology. 14: 381-400. PMID 15660932 DOI: 10.1111/j.1365-294X.2004.02379.x  1
2005 Govindarajan AF, Halanych KM, Cunningham CW. Mitochondrial evolution and phylogeography in the hydrozoan Obelia geniculata (Cnidaria) Marine Biology. 146: 213-222. DOI: 10.1007/s00227-004-1434-3  1
2005 Govindarajan AF, Halanych KM, Cunningham CW. Mitochondrial evolution and phylogeography in the hydrozoan Obelia geniculata (Cnidaria) Marine Biology. 146: 213-222. DOI: 10.1007/s00227-004-1434-3  1
2005 Cunningham C. The right time for synthesis in evolutionary biology Bioscience. 55: 99.  1
2004 Riginos C, Hickerson MJ, Henzler CM, Cunningham CW. Differential patterns of male and female mtDNA exchange across the Atlantic Ocean in the blue mussel, Mytilus edulis. Evolution; International Journal of Organic Evolution. 58: 2438-51. PMID 15612287  1
2002 Hahn MW, Rausher MD, Cunningham CW. Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7. Genetics. 161: 11-20. PMID 12019219  1
2002 Buckley TR, Cunningham CW. The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support. Molecular Biology and Evolution. 19: 394-405. PMID 11919280  1
2002 Morrison CL, Harvey AW, Lavery S, Tieu K, Huang Y, Cunningham CW. Mitochondrial gene rearrangements confirm the parallel evolution of the crab-like form. Proceedings. Biological Sciences / the Royal Society. 269: 345-50. PMID 11886621 DOI: 10.1098/rspb.2001.1886  1
2002 Riginos C, Sukhdeo K, Cunningham CW. Evidence for selection at multiple allozyme loci across a mussel hybrid zone. Molecular Biology and Evolution. 19: 347-51. PMID 11861894  1
2002 Oakley TH, Cunningham CW. Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences of the United States of America. 99: 1426-30. PMID 11818548 DOI: 10.1073/pnas.032483599  1
2002 Tudge CC, Cunningham CW. Molecular phylogeny of the mud lobsters and mud shrimps (Crustacea: Decapoda: Thalassinidea) using nuclear 18S rDNA and mitochondrial 16S rDNA Invertebrate Systematics. 16: 839-847. DOI: 10.1071/IS02012  1
2002 Wares JP, Goldwater DS, Kong BY, Cunningham CW. Refuting a controversial case of a human-mediated marine species introduction Ecology Letters. 5: 577-584. DOI: 10.1046/j.1461-0248.2002.00359.x  1
2002 Young AM, Torres C, Mack JE, Cunningham CW. Morphological and genetic evidence for vicariance and refugium in Atlantic and Gulf of Mexico populations of the hermit crab Pagurus longicarpus Marine Biology. 140: 1059-1066. DOI: 10.1007/s00227-002-0780-2  1
2001 Wares JP, Cunningham CW. Phylogeography and historical ecology of the North Atlantic intertidal. Evolution; International Journal of Organic Evolution. 55: 2455-69. PMID 11831661  1
2001 Wares JP, Gaines SD, Cunningham CW. A comparative study of asymmetric migration events across a marine biogeographic boundary. Evolution; International Journal of Organic Evolution. 55: 295-306. PMID 11308087  1
2000 Oakley TH, Cunningham CW. Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny. Evolution; International Journal of Organic Evolution. 54: 397-405. PMID 10937216  1
2000 Hickerson MJ, Cunningham CW. Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, anomura). Molecular Biology and Evolution. 17: 639-44. PMID 10742054  1
1999 Kim J, Kim W, Cunningham CW. A new perspective on lower metazoan relationships from 18S rDNA sequences. Molecular Biology and Evolution. 16: 423-7. PMID 10331269  1
1999 Cunningham CW. Some limitations of ancestral character-state reconstruction when testing evolutionary hypotheses Systematic Biology. 48: 665-674.  1
1998 Cunningham CW, Omland KE, Oakley TH. Reconstructing ancestral character states: a critical reappraisal. Trends in Ecology & Evolution. 13: 361-6. PMID 21238344 DOI: 10.1016/S0169-5347(98)01382-2  1
1998 Stanger-Hall K, Cunningham CW. Support for a monophyletic lemuriformes: overcoming incongruence between data partitions. Molecular Biology and Evolution. 15: 1572-7. PMID 12572621  1
1998 Cunningham CW, Zhu H, Hillis DM. Best-fit maximum-likelihood models for phylogenetic inference: Empirical tests with known phylogenies Evolution. 52: 978-987.  1
1998 Cunningham CW, Zhu H, Hillis DM. Best-fit maximum-likelihood models for phylogenetic inference: Empirical tests with known phylogenies Evolution. 52: 978-987.  1
1997 Cunningham CW. Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods. Systematic Biology. 46: 464-78. PMID 11975330  1
1997 Cunningham CW. Can three incongruence tests predict when data should be combined? Molecular Biology and Evolution. 14: 733-40. PMID 9214746  1
1997 Cunningham CW, Jeng K, Husti J, Badgett M, Molineux IJ, Hillis DM, Bull JJ. Parallel molecular evolution of deletions and nonsense mutations in bacteriophage T7. Molecular Biology and Evolution. 14: 113-6. PMID 9000760  1
1996 Huelsenbeck JP, Bull JJ, Cunningham CW. Reply from j.p. Huelsenbeck, j.j. Bull and C.w. Cunningham. Trends in Ecology & Evolution. 11: 335. PMID 21237868  1
1996 Huelsenbeck JP, Bull JJ, Cunningham CW. Combining data in phylogenetic analysis. Trends in Ecology & Evolution. 11: 152-8. PMID 21237790 DOI: 10.1016/0169-5347(96)10006-9  1
1995 Bridge D, Cunningham CW, DeSalle R, Buss LW. Class-level relationships in the phylum Cnidaria: molecular and morphological evidence. Molecular Biology and Evolution. 12: 679-89. PMID 7659022  1
1994 Hillis DM, Huelsenbeck JP, Cunningham CW. Application and accuracy of molecular phylogenies. Science (New York, N.Y.). 264: 671-7. PMID 8171318  1
1994 Huelsenbeck JP, Swofford DL, Cunningham CW, Bull JJ, Waddell PJ. Is character weighting a panacea for the problem of data heterogeneity in phylogenetic analysis? Systematic Biology. 43: 288-291.  1
1994 Huelsenbeck JP, Swofford DL, Cunningham CW, Bull JJ, Waddell PJ. Is character weighting a panacea for the problem of data heterogeneity in phylogenetic analysis? Systematic Biology. 43: 288-291.  1
1993 Bull JJ, Huelsenbeck JP, Cunningham CW, Swofford DL, Waddell PJ. Partitioning and combining data in phylogenetic analysis Systematic Biology. 42: 384-397. DOI: 10.1093/sysbio/42.3.384  1
1993 Cunningham CW, Buss LW. Molecular evidence for multiple episodes of paedomorphosis in the family Hydractiniidae Biochemical Systematics and Ecology. 21: 57-69. DOI: 10.1016/0305-1978(93)90009-G  1
1993 Cunningham CW, Buss LW. Molecular evidence for multiple episodes of paedomorphosis in the family Hydractiniidae Biochemical Systematics and Ecology. 21: 57-69. DOI: 10.1016/0305-1978(93)90009-G  1
1993 Lessios HA, Cunningham CW. The evolution of gametic incompatibility in neotropical Echinometra: A reply to McClary Evolution. 47: 1883-1885.  1
1993 Bull JJ, Huelsenbeck JP, Cunningham CW, Swofford DL, Waddell PJ. Partitioning and combining data in phylogenetic analysis Systematic Biology. 42: 384-397.  1
1992 Cunningham CW, Blackstone NW, Buss LW. Evolution of king crabs from hermit crab ancestors. Nature. 355: 539-42. PMID 1741031 DOI: 10.1038/355539a0  1
1992 Bridge D, Cunningham CW, Schierwater B, DeSalle R, Buss LW. Class-level relationships in the phylum Cnidaria: evidence from mitochondrial genome structure. Proceedings of the National Academy of Sciences of the United States of America. 89: 8750-3. PMID 1356268  1
1991 Cunningham CW, Buss LW, Anderson C. Molecular and geologic evidence of shared history between hermit crabs and the symbiotic genus Hydractinia Evolution. 45: 1301-1316.  1
1991 Cunningham CW, Buss LW, Anderson C. Molecular and geologic evidence of shared history between hermit crabs and the symbiotic genus Hydractinia Evolution. 45: 1301-1316.  1
1990 Lessios HA, Cunningham CW. Gametic incompatibility between species of the sea urchin Echinometra on the two sides of the Isthmus of Panama Evolution. 44: 933-941.  1
1987 Yund PO, Cunningham CW, Buss LW. Recruitment and postrecruitment interactions in a colonial hydroid. Ecology. 68: 971-982.  1
1981 Bertness MD, Cunningham C. Crab shell-crushing predation and gastropod architectural defense Journal of Experimental Marine Biology and Ecology. 50: 213-230. DOI: 10.1016/0022-0981(81)90051-4  1
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