John M. Logsdon , Ph.D. - Publications

Affiliations: 
Biology University of Iowa, Iowa City, IA 
Area:
Molecular evolution, introns, meiosis, sex, eukaryotic phylogeny
Website:
http://euplotes.biology.uiowa.edu

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 Logsdon JM. Asexual Daphnia genomes expose something old, new, borrowed, and blue. Proceedings of the National Academy of Sciences of the United States of America. 110: 15518-9. PMID 24062444 DOI: 10.1073/pnas.1314088110  0.96
2013 Hanson SJ, Stelzer CP, Welch DB, Logsdon JM. Comparative transcriptome analysis of obligately asexual and cyclically sexual rotifers reveals genes with putative functions in sexual reproduction, dormancy, and asexual egg production. Bmc Genomics. 14: 412. PMID 23782598 DOI: 10.1186/1471-2164-14-412  0.96
2013 Hanson SJ, Schurko AM, Hecox-Lea B, Welch DB, Stelzer CP, Logsdon JM. Inventory and phylogenetic analysis of meiotic genes in monogonont rotifers. The Journal of Heredity. 104: 357-70. PMID 23487324 DOI: 10.1093/jhered/est011  0.96
2013 Wilton PR, Sloan DB, Logsdon JM, Doddapaneni H, Neiman M. Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum). Molecular Ecology Resources. 13: 289-94. PMID 23280235 DOI: 10.1111/1755-0998.12051  0.96
2011 Malik SB, Brochu CD, Bilic I, Yuan J, Hess M, Logsdon JM, Carlton JM. Phylogeny of parasitic parabasalia and free-living relatives inferred from conventional markers vs. Rpb1, a single-copy gene. Plos One. 6: e20774. PMID 21695260 DOI: 10.1371/journal.pone.0020774  0.96
2010 Logsdon JM. Eukaryotic evolution: the importance of being archaebacterial. Current Biology : Cb. 20: R1078-9. PMID 21172628 DOI: 10.1016/j.cub.2010.11.020  0.96
2010 Logsdon JM, Neiman M. Meeting for sex in Iowa. The Journal of Heredity. 101: S1-2. PMID 20421319 DOI: 10.1093/jhered/esq038  0.96
2010 Schurko AM, Mazur DJ, Logsdon JM. Inventory and phylogenomic distribution of meiotic genes in Nasonia vitripennis and among diverse arthropods. Insect Molecular Biology. 19: 165-80. PMID 20167026 DOI: 10.1111/j.1365-2583.2009.00948.x  0.96
2010 Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, et al. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (New York, N.Y.). 327: 343-8. PMID 20075255 DOI: 10.1126/science.1178028  0.96
2010 Neiman M, Hehman G, Miller JT, Logsdon JM, Taylor DR. Accelerated mutation accumulation in asexual lineages of a freshwater snail. Molecular Biology and Evolution. 27: 954-63. PMID 19995828 DOI: 10.1093/molbev/msp300  0.96
2009 Schurko AM, Logsdon JM, Eads BD. Meiosis genes in Daphnia pulex and the role of parthenogenesis in genome evolution. Bmc Evolutionary Biology. 9: 78. PMID 19383157 DOI: 10.1186/1471-2148-9-78  0.96
2009 Schurko AM, Neiman M, Logsdon JM. Signs of sex: what we know and how we know it. Trends in Ecology & Evolution. 24: 208-17. PMID 19282047 DOI: 10.1016/j.tree.2008.11.010  0.96
2008 Kahn RA, Bruford E, Inoue H, Logsdon JM, Nie Z, Premont RT, Randazzo PA, Satake M, Theibert AB, Zapp ML, Cassel D. Consensus nomenclature for the human ArfGAP domain-containing proteins. The Journal of Cell Biology. 182: 1039-44. PMID 18809720 DOI: 10.1083/jcb.200806041  0.96
2008 McQuiston JR, Herrera-Leon S, Wertheim BC, Doyle J, Fields PI, Tauxe RV, Logsdon JM. Molecular phylogeny of the salmonellae: relationships among Salmonella species and subspecies determined from four housekeeping genes and evidence of lateral gene transfer events. Journal of Bacteriology. 190: 7060-7. PMID 18757540 DOI: 10.1128/JB.01552-07  0.96
2008 Malik SB, Pightling AW, Stefaniak LM, Schurko AM, Logsdon JM. An expanded inventory of conserved meiotic genes provides evidence for sex in Trichomonas vaginalis. Plos One. 3: e2879. PMID 18663385 DOI: 10.1371/journal.pone.0002879  0.96
2008 Schurko AM, Logsdon JM. Using a meiosis detection toolkit to investigate ancient asexual "scandals" and the evolution of sex. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 30: 579-89. PMID 18478537 DOI: 10.1002/bies.20764  0.96
2008 McQuiston JR, Fields PI, Tauxe RV, Logsdon JM. Do Salmonella carry spare tyres? Trends in Microbiology. 16: 142-8. PMID 18375124 DOI: 10.1016/j.tim.2008.01.009  0.96
2008 Moore RB, Oborník M, Janouskovec J, Chrudimský T, Vancová M, Green DH, Wright SW, Davies NW, Bolch CJ, Heimann K, Slapeta J, Hoegh-Guldberg O, Logsdon JM, Carter DA. A photosynthetic alveolate closely related to apicomplexan parasites. Nature. 451: 959-63. PMID 18288187 DOI: 10.1038/nature06635  0.96
2008 Logsdon JM. Evolutionary genetics: sex happens in Giardia. Current Biology : Cb. 18: R66-8. PMID 18211841 DOI: 10.1016/j.cub.2007.11.019  0.96
2008 Yoon HS, Grant J, Tekle YI, Wu M, Chaon BC, Cole JC, Logsdon JM, Patterson DJ, Bhattacharya D, Katz LA. Broadly sampled multigene trees of eukaryotes. Bmc Evolutionary Biology. 8: 14. PMID 18205932 DOI: 10.1186/1471-2148-8-14  0.96
2007 Malik SB, Ramesh MA, Hulstrand AM, Logsdon JM. Protist homologs of the meiotic Spo11 gene and topoisomerase VI reveal an evolutionary history of gene duplication and lineage-specific loss. Molecular Biology and Evolution. 24: 2827-41. PMID 17921483 DOI: 10.1093/molbev/msm217  0.96
2007 Andersson JO, Sjögren AM, Horner DS, Murphy CA, Dyal PL, Svärd SG, Logsdon JM, Ragan MA, Hirt RP, Roger AJ. A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution. Bmc Genomics. 8: 51. PMID 17298675 DOI: 10.1186/1471-2164-8-51  0.96
2007 Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, et al. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science (New York, N.Y.). 315: 207-12. PMID 17218520 DOI: 10.1126/science.1132894  0.96
2007 Vanderford TH, Demma LJ, Feinberg MB, Staprans SI, Logsdon JM. Adaptation of a diverse simian immunodeficiency virus population to a new host is revealed through a systematic approach to identify amino acid sites under selection. Molecular Biology and Evolution. 24: 660-9. PMID 17159231 DOI: 10.1093/molbev/msl194  0.96
2006 Demma LJ, Vanderford TH, Logsdon JM, Feinberg MB, Staprans SI. Evolution of the uniquely adaptable lentiviral envelope in a natural reservoir host. Retrovirology. 3: 19. PMID 16549011 DOI: 10.1186/1742-4690-3-19  0.96
2005 Thomas SE, Soltani-Bejnood M, Roth P, Dorn R, Logsdon JM, McKee BD. Identification of two proteins required for conjunction and regular segregation of achiasmate homologs in Drosophila male meiosis. Cell. 123: 555-68. PMID 16286005 DOI: 10.1016/j.cell.2005.08.043  0.96
2005 Demma LJ, Logsdon JM, Vanderford TH, Feinberg MB, Staprans SI. SIVsm quasispecies adaptation to a new simian host. Plos Pathogens. 1: e3. PMID 16201015 DOI: 10.1371/journal.ppat.0010003  0.96
2005 Stewart AD, Logsdon JM, Kelley SE. An empirical study of the evolution of virulence under both horizontal and vertical transmission. Evolution; International Journal of Organic Evolution. 59: 730-9. PMID 15926685  0.96
2005 Nicholson AC, Malik SB, Logsdon JM, Van Meir EG. Functional evolution of ADAMTS genes: evidence from analyses of phylogeny and gene organization. Bmc Evolutionary Biology. 5: 11. PMID 15693998 DOI: 10.1186/1471-2148-5-11  0.96
2005 Ramesh MA, Malik SB, Logsdon JM. A phylogenomic inventory of meiotic genes; evidence for sex in Giardia and an early eukaryotic origin of meiosis. Current Biology : Cb. 15: 185-91. PMID 15668177 DOI: 10.1016/j.cub.2005.01.003  0.96
2004 Li Y, Kelly WG, Logsdon JM, Schurko AM, Harfe BD, Hill-Harfe KL, Kahn RA. Functional genomic analysis of the ADP-ribosylation factor family of GTPases: phylogeny among diverse eukaryotes and function in C. elegans. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 18: 1834-50. PMID 15576487 DOI: 10.1096/fj.04-2273com  0.96
2004 Logsdon JM. Worm genomes hold the smoking guns of intron gain. Proceedings of the National Academy of Sciences of the United States of America. 101: 11195-6. PMID 15277668 DOI: 10.1073/pnas.0404148101  0.96
2003 Solomon KS, Logsdon JM, Fritz A. Expression and phylogenetic analyses of three zebrafish FoxI class genes. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 228: 301-7. PMID 14579370 DOI: 10.1002/dvdy.10373  0.96
2003 Genereux DP, Logsdon JM. Much ado about bacteria-to-vertebrate lateral gene transfer. Trends in Genetics : Tig. 19: 191-5. PMID 12683971 DOI: 10.1016/S0168-9525(03)00055-6  0.96
2002 Dacks JB, Marinets A, Ford Doolittle W, Cavalier-Smith T, Logsdon JM. Analyses of RNA Polymerase II genes from free-living protists: phylogeny, long branch attraction, and the eukaryotic big bang. Molecular Biology and Evolution. 19: 830-40. PMID 12032239  0.96
2002 Striepen B, White MW, Li C, Guerini MN, Malik SB, Logsdon JM, Liu C, Abrahamsen MS. Genetic complementation in apicomplexan parasites. Proceedings of the National Academy of Sciences of the United States of America. 99: 6304-9. PMID 11959921 DOI: 10.1073/pnas.092525699  0.96
2000 Archibald JM, Logsdon JM, Doolittle WF. Origin and evolution of eukaryotic chaperonins: phylogenetic evidence for ancient duplications in CCT genes. Molecular Biology and Evolution. 17: 1456-66. PMID 11018153  0.96
2000 Leong WL, Dobson MJ, Logsdon JM, Abdel-Majid RM, Schalkwyk LC, Guernsey DL, Neumann PE. ETn insertion in the mouse Adcy1 gene: transcriptional and phylogenetic analyses. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 11: 97-103. PMID 10656922 DOI: 10.1007/s003350010020  0.96
1999 Fast NM, Logsdon JM, Doolittle WF. Phylogenetic analysis of the TATA box binding protein (TBP) gene from Nosema locustae: evidence for a microsporidia-fungi relationship and spliceosomal intron loss. Molecular Biology and Evolution. 16: 1415-9. PMID 10563021  0.96
1999 Logsdon JM, Faguy DM. Thermotoga heats up lateral gene transfer. Current Biology : Cb. 9: R747-51. PMID 10531001 DOI: 10.1016/S0960-9822(99)80474-6  0.96
1999 Archibald JM, Logsdon JM, Doolittle WF. Recurrent paralogy in the evolution of archaeal chaperonins. Current Biology : Cb. 9: 1053-6. PMID 10508614 DOI: 10.1016/S0960-9822(99)80457-6  0.96
1999 Funke RP, Kovar JL, Logsdon JM, Corrette-Bennett JC, Straus DR, Weeks DP. Nucleus-encoded, plastid-targeted acetolactate synthase genes in two closely related chlorophytes, Chlamydomonas reihardtii and Volvox carteri: phylogenetic origins and recent insertion of introns. Molecular & General Genetics : Mgg. 262: 12-21. PMID 10503531 DOI: 10.1007/s004380051054  0.96
1999 Hirt RP, Logsdon JM, Healy B, Dorey MW, Doolittle WF, Embley TM. Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins. Proceedings of the National Academy of Sciences of the United States of America. 96: 580-5. PMID 9892676 DOI: 10.1073/pnas.96.2.580  0.96
1998 Logsdon JM. The recent origins of spliceosomal introns revisited. Current Opinion in Genetics & Development. 8: 637-48. PMID 9914210 DOI: 10.1016/S0959-437X(98)80031-2  0.96
1998 Logsdon JM, Stoltzfus A, Doolittle WF. Molecular evolution: recent cases of spliceosomal intron gain? Current Biology : Cb. 8: R560-3. PMID 9707398  0.96
1998 Doolittle WF, Logsdon JM. Archaeal genomics: do archaea have a mixed heritage? Current Biology : Cb. 8: R209-11. PMID 9512414  0.96
1997 Stoltzfus A, Logsdon JM, Palmer JD, Doolittle WF. Intron "sliding" and the diversity of intron positions. Proceedings of the National Academy of Sciences of the United States of America. 94: 10739-44. PMID 9380704 DOI: 10.1073/pnas.94.20.10739  1
1997 Unkles SE, Logsdon JM, Robison K, Kinghorn JR, Duncan JM. The tigA gene is a transcriptional fusion of glycolytic genes encoding triose-phosphate isomerase and glyceraldehyde-3-phosphate dehydrogenase in oomycota. Journal of Bacteriology. 179: 6816-23. PMID 9352934  0.96
1997 Logsdon JM, Doolittle WF. Origin of antifreeze protein genes: a cool tale in molecular evolution. Proceedings of the National Academy of Sciences of the United States of America. 94: 3485-7. PMID 9108001 DOI: 10.1073/pnas.94.8.3485  1
1997 Stassen NY, Logsdon JM, Vora GJ, Offenberg HH, Palmer JD, Zolan ME. Isolation and characterization of rad51 orthologs from Coprinus cinereus and Lycopersicon esculentum, and phylogenetic analysis of eukaryotic recA homologs. Current Genetics. 31: 144-57. PMID 9021132 DOI: 10.1007/s002940050189  0.96
1996 Keeling PJ, Logsdon JM. Highly divergent Caenorhabditis and Saccharomyces tubulins evolved recently from genes encoding gamma-tubulin. Trends in Cell Biology. 6: 375; author reply 37. PMID 15157518 DOI: 10.1016/0962-8924(96)20033-9  0.92
1996 Ragan MA, Logsdon JM, Sensen CW, Charlebois RL, Doolittle WF. An archaebacterial homolog of pelota, a meiotic cell division protein in eukaryotes. Fems Microbiology Letters. 144: 151-5. PMID 8900058 DOI: 10.1016/0378-1097(96)00351-5  0.96
1995 Logsdon JM, Tyshenko MG, Dixon C, D-Jafari J, Walker VK, Palmer JD. Seven newly discovered intron positions in the triose-phosphate isomerase gene: evidence for the introns-late theory. Proceedings of the National Academy of Sciences of the United States of America. 92: 8507-11. PMID 7667320 DOI: 10.1073/pnas.92.18.8507  0.96
1994 Logsdon JM, Palmer JD. Origin of introns--early or late? Nature. 369: 526; author reply 52. PMID 8202152 DOI: 10.1038/369526a0  0.96
1994 Stoltzfus A, Spencer DF, Zuker M, Logsdon JM, Doolittle WF. Testing the exon theory of genes: the evidence from protein structure. Science (New York, N.Y.). 265: 202-7. PMID 8023140 DOI: 10.1126/science.8023140  0.96
1991 Palmer JD, Logsdon JM. The recent origins of introns. Current Opinion in Genetics & Development. 1: 470-7. PMID 1822279 DOI: 10.1016/S0959-437X(05)80194-7  0.96
1991 Pichersky E, Logsdon JM, McGrath JM, Stasys RA. Fragments of plastid DNA in the nuclear genome of tomato: prevalence, chromosomal location, and possible mechanism of integration. Molecular & General Genetics : Mgg. 225: 453-8. PMID 1673221 DOI: 10.1007/BF00261687  0.96
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