Olivier Fedrigo, Ph.D. - Publications

Duke University, Durham, NC 
molecular evolution, Genomics

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Ganapathy G, Howard JT, Ward JM, Li J, Li B, Li Y, Xiong Y, Zhang Y, Zhou S, Schwartz DC, Schatz M, Aboukhalil R, Fedrigo O, Bukovnik L, Wang T, et al. High-coverage sequencing and annotated assemblies of the budgerigar genome. Gigascience. 3: 11. PMID 25061512 DOI: 10.1186/2047-217X-3-11  0.52
2014 Horvath JE, Ramachandran GL, Fedrigo O, Nielsen WJ, Babbitt CC, St Clair EM, Pfefferle LW, Jernvall J, Wray GA, Wall CE. Genetic comparisons yield insight into the evolution of enamel thickness during human evolution. Journal of Human Evolution. 73: 75-87. PMID 24810709 DOI: 10.1016/j.jhevol.2014.01.005  0.52
2014 Guo X, Zheng S, Dang H, Pace RG, Stonebraker JR, Jones CD, Boellmann F, Yuan G, Haridass P, Fedrigo O, Corcoran DL, Seibold MA, Ranade SS, Knowles MR, O'Neal WK, et al. Genome reference and sequence variation in the large repetitive central exon of human MUC5AC. American Journal of Respiratory Cell and Molecular Biology. 50: 223-32. PMID 24010879 DOI: 10.1165/rcmb.2013-0235OC  0.52
2013 Ousterout DG, Perez-Pinera P, Thakore PI, Kabadi AM, Brown MT, Qin X, Fedrigo O, Mouly V, Tremblay JP, Gersbach CA. Reading frame correction by targeted genome editing restores dystrophin expression in cells from Duchenne muscular dystrophy patients. Molecular Therapy : the Journal of the American Society of Gene Therapy. 21: 1718-26. PMID 23732986 DOI: 10.1038/mt.2013.111  0.52
2012 Shibata Y, Sheffield NC, Fedrigo O, Babbitt CC, Wortham M, Tewari AK, London D, Song L, Lee BK, Iyer VR, Parker SC, Margulies EH, Wray GA, Furey TS, Crawford GE. Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection. Plos Genetics. 8: e1002789. PMID 22761590 DOI: 10.1371/journal.pgen.1002789  0.52
2011 Fedrigo O, Pfefferle AD, Babbitt CC, Haygood R, Wall CE, Wray GA. A potential role for glucose transporters in the evolution of human brain size. Brain, Behavior and Evolution. 78: 315-26. PMID 21986508 DOI: 10.1159/000329852  0.52
2011 Pfefferle AD, Warner LR, Wang CW, Nielsen WJ, Babbitt CC, Fedrigo O, Wray GA. Comparative expression analysis of the phosphocreatine circuit in extant primates: Implications for human brain evolution. Journal of Human Evolution. 60: 205-12. PMID 21190724 DOI: 10.1016/j.jhevol.2010.10.004  0.52
2011 Babbitt CC, Warner LR, Fedrigo O, Wall CE, Wray GA. Genomic signatures of diet-related shifts during human origins. Proceedings. Biological Sciences / the Royal Society. 278: 961-9. PMID 21177690 DOI: 10.1098/rspb.2010.2433  0.52
2010 Cruz-Gordillo P, Fedrigo O, Wray GA, Babbitt CC. Extensive changes in the expression of the opioid genes between humans and chimpanzees. Brain, Behavior and Evolution. 76: 154-62. PMID 21079395 DOI: 10.1159/000320968  0.52
2010 Fedrigo O, Warner LR, Pfefferle AD, Babbitt CC, Cruz-Gordillo P, Wray GA. A pipeline to determine RT-QPCR control genes for evolutionary studies: application to primate gene expression across multiple tissues. Plos One. 5. PMID 20824057 DOI: 10.1371/journal.pone.0012545  0.52
2010 Haygood R, Babbitt CC, Fedrigo O, Wray GA. Contrasts between adaptive coding and noncoding changes during human evolution. Proceedings of the National Academy of Sciences of the United States of America. 107: 7853-7. PMID 20385805 DOI: 10.1073/pnas.0911249107  0.52
2010 Babbitt CC, Fedrigo O, Pfefferle AD, Boyle AP, Horvath JE, Furey TS, Wray GA. Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain. Genome Biology and Evolution. 2: 67-79. PMID 20333225 DOI: 10.1093/gbe/evq002  0.52
2010 Fédrigo O, Wray GA. Developmental evolution: how beetles evolved their shields. Current Biology : Cb. 20: R64-6. PMID 20129042 DOI: 10.1016/j.cub.2009.12.012  0.52
2009 Tung J, Fédrigo O, Haygood R, Mukherjee S, Wray GA. Genomic features that predict allelic imbalance in humans suggest patterns of constraint on gene expression variation. Molecular Biology and Evolution. 26: 2047-59. PMID 19506001 DOI: 10.1093/molbev/msp113  0.52
2008 Haygood R, Fedrigo O, Wray GA. Reply to "Rapidly evolving human promoter regions" Nature Genetics. 40: 1263-1264. DOI: 10.1038/ng1108-1263  0.52
2007 Haygood R, Fedrigo O, Hanson B, Yokoyama KD, Wray GA. Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution. Nature Genetics. 39: 1140-4. PMID 17694055 DOI: 10.1038/ng2104  0.52
2006 López JA, Ryburn JA, Fedrigo O, Naylor GJ. Phylogeny of sharks of the family Triakidae (Carcharhiniformes) and its implications for the evolution of carcharhiniform placental viviparity. Molecular Phylogenetics and Evolution. 40: 50-60. PMID 16564708 DOI: 10.1016/j.ympev.2006.02.011  0.52
2005 Collins TM, Fedrigo O, Naylor GJ. Choosing the best genes for the job: the case for stationary genes in genome-scale phylogenetics. Systematic Biology. 54: 493-500. PMID 16012114 DOI: 10.1080/10635150590947339  0.52
2005 Fedrigo O, Adams DC, Naylor GJ. DRUIDS--detection of regions with unexpected internal deviation from stationarity. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 304: 119-28. PMID 15706597 DOI: 10.1002/jez.b.21032  0.52
2004 Fedrigo O, Naylor G. A gene-specific DNA sequencing chip for exploring molecular evolutionary change. Nucleic Acids Research. 32: 1208-13. PMID 14973200 DOI: 10.1093/nar/gkh210  0.52
2002 Savolainen V, Chase MW, Salamin N, Soltis DE, Soltis PS, López AJ, Fédrigo O, Naylor GJ. Phylogeny reconstruction and functional constraints in organellar genomes: plastid atpB and rbcL sequences versus animal mitochondrion. Systematic Biology. 51: 638-47. PMID 12228005 DOI: 10.1080/10635150290102348  0.52
2001 Tavaré S, Adams DC, Fedrigo O, Naylor GJ. A model for phylogenetic inference using structural and chemical covariates. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 215-25. PMID 11262942  0.52
2001 Baccam P, Thompson RJ, Fedrigo O, Carpenter S, Cornette JL. PAQ: Partition Analysis of Quasispecies. Bioinformatics (Oxford, England). 17: 16-22. PMID 11222259  0.52
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