Timothy Collins, Ph.D. - Publications

Florida International University, Miami, FL, United States 
Molecular Phylogenetics

31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 González VL, Andrade SC, Bieler R, Collins TM, Dunn CW, Mikkelsen PM, Taylor JD, Giribet G. A phylogenetic backbone for Bivalvia: an RNA-seq approach. Proceedings. Biological Sciences / the Royal Society. 282: 20142332. PMID 25589608 DOI: 10.1098/rspb.2014.2332  0.64
2014 Harrison E, Trexler JC, Collins TM, Vazquez-Domínguez E, Razo-Mendivil U, Matamoros WA, Barrientos C. Genetic evidence for multiple sources of the non-native fish Cichlasoma urophthalmus (Günther; Mayan Cichlids) in southern Florida. Plos One. 9: e104173. PMID 25184569 DOI: 10.1371/journal.pone.0104173  0.64
2014 Golding RE, Bieler R, Rawlings TA, Collins TM. Deconstructing dendropoma: A systematic revision of a world-wide worm-snail group, with descriptions of new genera (Caenogastropoda: Vermetidae) Malacologia. 57: 1-97. DOI: 10.4002/040.057.0103  0.64
2014 Bieler R, Mikkelsen PM, Collins TM, Glover EA, González VL, Graf DL, Harper EM, Healy J, Kawauchi GY, Sharma PP, Staubach S, Strong EE, Taylor JD, Tëmkin I, Zardus JD, et al. Investigating the Bivalve Tree of Life - An exemplar-based approach combining molecular and novel morphological characters Invertebrate Systematics. 28: 32-115. DOI: 10.1071/IS13010  0.64
2013 Collins T, Kearney M, Maddison D. The Ideas Lab Concept, Assembling the Tree of Life, and AVAToL. Plos Currents. 5. PMID 24045602 DOI: 10.1371/currents.tol.0fdb85e1619f313a2a5a2ec3d7a8df9e  0.64
2013 Harrison E, Love CN, Jones KL, Lance SL, Trexler JC, Collins T. Isolation and characterization of 18 novel polymorphic microsatellite markers from the Mayan cichlid (Cichlasoma urophthalmus) Conservation Genetics Resources. 5: 703-705. DOI: 10.1007/s12686-013-9886-8  0.64
2012 Sharma PP, González VL, Kawauchi GY, Andrade SC, Guzmán A, Collins TM, Glover EA, Harper EM, Healy JM, Mikkelsen PM, Taylor JD, Bieler R, Giribet G. Phylogenetic analysis of four nuclear protein-encoding genes largely corroborates the traditional classification of Bivalvia (Mollusca). Molecular Phylogenetics and Evolution. 65: 64-74. PMID 22659514 DOI: 10.1016/j.ympev.2012.05.025  0.64
2012 Trusty JL, Tye A, Collins TM, Michelangeli FA, Madriz P, Francisco-Ortega J. Galápagos and cocos islands: Geographically close, botanically distant International Journal of Plant Sciences. 173: 36-53. DOI: 10.1086/662657  0.64
2011 Nico LG, Sharp P, Collins TM. Imported Asian swamp eels (Synbranchidae: Monopterus) in North American live food markets: Potential vectors of non-native parasites Aquatic Invasions. 6: 69-76. DOI: 10.3391/ai.2011.1.08  0.64
2010 Rawlings TA, MacInnis MJ, Bieler R, Boore JL, Collins TM. Sessile snails, dynamic genomes: gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs. Bmc Genomics. 11: 440. PMID 20642828 DOI: 10.1186/1471-2164-11-440  0.64
2010 Fourqurean JW, Smith TJ, Possley J, Collins TM, Lee D, Namoff S. Are mangroves in the tropical Atlantic ripe for invasion? Exotic mangrove trees in the forests of South Florida Biological Invasions. 12: 2509-2522. DOI: 10.1007/s10530-009-9660-8  0.64
2008 Buendia P, Collins TM, Narasimhan G. The role of internal node sequences and the molecular clock in the analysis of serially-sampled data. International Journal of Bioinformatics Research and Applications. 4: 107-21. PMID 18283032 DOI: 10.1504/IJBRA.2008.017167  0.64
2007 Almodóvar S, Del C Colón M, Maldonado IM, Villafañe R, Abreu S, Meléndez I, Domínguez C, Cuevas W, Collins TM, Lorenzo E. HIV-1 infection of monocytes is directly related to the success of HAART. Virology. 369: 35-46. PMID 17707072 DOI: 10.1016/j.virol.2007.07.010  0.64
2007 Rawlings TA, Hayes KA, Cowie RH, Collins TM. The identity, distribution, and impacts of non-native apple snails in the continental United States. Bmc Evolutionary Biology. 7: 97. PMID 17594487 DOI: 10.1186/1471-2148-7-97  0.64
2007 Freeman B, Nico LG, Osentoski M, Jelks HL, Collins TM. Molecular systematics of Serrasalmidae: Deciphering the identities of piranha species and unraveling their evolutionary histories Zootaxa. 1-38.  0.64
2006 Buendia P, Collins TM, Narasimhan G. Reconstructing ancestor-descendant lineages from serially-sampled data: A comparison study Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3992: 807-814. DOI: 10.1007/11758525_108  0.64
2005 Collins TM, Fedrigo O, Naylor GJ. Choosing the best genes for the job: the case for stationary genes in genome-scale phylogenetics. Systematic Biology. 54: 493-500. PMID 16012114 DOI: 10.1080/10635150590947339  0.64
2005 Medina M, Collins T, Walsh PJ. Phylogeny of sea hares in the Aplysia clade based on mitochondrial DNA sequence data Bulletin of Marine Science. 76: 691-698.  0.64
2002 Collins TM, Trexler JC, Nico LG, Rawlings TA. Genetic diversity in a morphologically conservative invasive taxon: Multiple introductions of swamp eels to the southeastern United States Conservation Biology. 16: 1024-1035. DOI: 10.1046/j.1523-1739.2002.01182.x  0.64
2001 Medina M, Collins TM, Walsh PJ. MtDNA ribosomal gene phylogeny of sea hares in the genus aplysia (gastropoda, opisthobranchia, anaspidea): Implications for comparative neurobiology Systematic Biology. 50: 676-688. PMID 12116938 DOI: 10.1080/106351501753328802  0.64
2001 Rawlings TA, Collins TM, Bieler R. A major mitochondrial gene rearrangement among closely related species. Molecular Biology and Evolution. 18: 1604-9. PMID 11470854  0.64
2001 Lorenzo E, Collins T, Fisher E, Herrera RJ. The use of tat and env sequences from human immunodeficiency virus 1 in phylogenetic epidemiological studies Electrophoresis. 22: 438-444. PMID 11258752 DOI: 10.1002/1522-2683(200102)22:3<438::AID-ELPS438>3.0.CO;2-0  0.64
2001 Lee DW, Collins TM. Phylogenetic and ontogenetic influences on the distribution of anthocyanins and betacyanins in leaves of tropical plants International Journal of Plant Sciences. 162: 1141-1153. DOI: 10.1086/321926  0.64
1996 Collins TM, Frazer K, Palmer AR, Vermeij GJ, Brown WM. EVOLUTIONARY HISTORY OF NORTHERN HEMISPHERE NUCELLA (GASTROPODA, MURICIDAE): MOLECULAR, MORPHOLOGICAL, ECOLOGICAL, AND PALEONTOLOGICAL EVIDENCE. Evolution; International Journal of Organic Evolution. 50: 2287-2304. PMID 28565690 DOI: 10.1111/j.1558-5646.1996.tb03617.x  0.92
1996 Collins TM, Frazer K, Palmer AR, Vermeij GJ, Brown WM. Evolutionary history of northern hemisphere Nucella (Gastropoda, Muricidae): Molecular, morphological, ecological, and paleontological evidence Evolution. 50: 2287-2304.  0.64
1996 Brawn JD, Collins TM, Medina M, Bermingham E. Associations between physical isolation and geographical variation within three species of Neotropical birds Molecular Ecology. 5: 33-46.  0.64
1995 Naylor GJ, Collins TM, Brown WM. Hydrophobicity and phylogeny. Nature. 373: 565-6. PMID 7854410 DOI: 10.1038/373565b0  0.92
1995 Boore JL, Collins TM, Stanton D, Daehler LL, Brown WM. Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature. 376: 163-5. PMID 7603565 DOI: 10.1038/376163a0  0.64
1995 Naylor GJP, Collins TM, Brown WM. Hydrophobicity and phylogeny [5] Nature. 373: 565-566.  0.64
1994 Collins TM, Wimberger PH, Naylor GJP. Compositional bias, character-state bias, and character-state reconstruction using parsimony Systematic Biology. 43: 482-496.  0.64
1994 Collins TM, Kraus F, Estabrook G. Compositional effects and weighting of nucleotide sequences for phylogenetic analysis Systematic Biology. 43: 449-459.  0.64
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