Lin Chao, Ph.D. - Publications

Affiliations: 
EEB University of California, San Diego, La Jolla, CA 

62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Proenca AM, Rang CU, Qiu A, Shi C, Chao L. Cell aging preserves cellular immortality in the presence of lethal levels of damage. Plos Biology. 17: e3000266. PMID 31120870 DOI: 10.1371/journal.pbio.3000266  0.52
2018 Rang CU, Proenca A, Buetz C, Shi C, Chao L. Minicells as a Damage Disposal Mechanism in Escherichia coli. Msphere. 3. PMID 30232168 DOI: 10.1128/mSphere.00428-18  0.52
2018 Proenca AM, Rang CU, Buetz C, Shi C, Chao L. Age structure landscapes emerge from the equilibrium between aging and rejuvenation in bacterial populations. Nature Communications. 9: 3722. PMID 30213942 DOI: 10.1038/s41467-018-06154-9  0.52
2016 Chao L, Rang CU, Proenca AM, Chao JU. Asymmetrical Damage Partitioning in Bacteria: A Model for the Evolution of Stochasticity, Determinism, and Genetic Assimilation. Plos Computational Biology. 12: e1004700. PMID 26761487 DOI: 10.1371/journal.pcbi.1004700  1
2014 Campbell EM, Chao L. A population model evaluating the consequences of the evolution of double-resistance and tradeoffs on the benefits of two-drug antibiotic treatments. Plos One. 9: e86971. PMID 24498003 DOI: 10.1371/journal.pone.0086971  1
2013 Díaz-Muñoz SL, Tenaillon O, Goldhill D, Brao K, Turner PE, Chao L. Electrophoretic mobility confirms reassortment bias among geographic isolates of segmented RNA phages. Bmc Evolutionary Biology. 13: 206. PMID 24059872 DOI: 10.1186/1471-2148-13-206  1
2012 Rang CU, Peng AY, Poon AF, Chao L. Ageing in Escherichia coli requires damage by an extrinsic agent. Microbiology (Reading, England). 158: 1553-9. PMID 22422756 DOI: 10.1099/mic.0.057240-0  1
2011 Le Nagard H, Chao L, Tenaillon O. The emergence of complexity and restricted pleiotropy in adapting networks. Bmc Evolutionary Biology. 11: 326. PMID 22059952 DOI: 10.1186/1471-2148-11-326  1
2011 Rang CU, Peng AY, Chao L. Temporal dynamics of bacterial aging and rejuvenation. Current Biology : Cb. 21: 1813-6. PMID 22036179 DOI: 10.1016/j.cub.2011.09.018  1
2010 Chao L. A model for damage load and its implications for the evolution of bacterial aging. Plos Genetics. 6. PMID 20865171 DOI: 10.1371/journal.pgen.1001076  1
2010 O'Keefe KJ, Silander OK, McCreery H, Weinreich DM, Wright KM, Chao L, Edwards SV, Remold SK, Turner PE. Geographic differences in sexual reassortment in RNA phage. Evolution; International Journal of Organic Evolution. 64: 3010-23. PMID 20500219 DOI: 10.1111/j.1558-5646.2010.01040.x  1
2009 Joseph SB, Hanley KA, Chao L, Burch CL. Coinfection rates in Φ6 bacteriophage are enhanced by virus-induced changes in host cells. Evolutionary Applications. 2: 24-31. PMID 25567844 DOI: 10.1111/j.1752-4571.2008.00055.x  1
2009 Wu CC, Alvarez SD, Rang CU, Chao L, Sailor MJ. Label-free optical detection of bacteria on a 1-D photonic crystal of porous silicon Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7167. DOI: 10.1117/12.809338  1
2007 Silander OK, Tenaillon O, Chao L. Understanding the evolutionary fate of finite populations: the dynamics of mutational effects. Plos Biology. 5: e94. PMID 17407380 DOI: 10.1371/journal.pbio.0050094  1
2007 Ackermann M, Chao L, Bergstrom CT, Doebeli M. On the evolutionary origin of aging. Aging Cell. 6: 235-44. PMID 17376147 DOI: 10.1111/j.1474-9726.2007.00281.x  1
2007 Tenaillon O, Silander OK, Uzan JP, Chao L. Quantifying organismal complexity using a population genetic approach. Plos One. 2: e217. PMID 17299597 DOI: 10.1371/journal.pone.0000217  1
2007 Schwartz MP, Yu C, Alvarez SD, Migliori B, Godin D, Chao L, Sailor MJ. Using an oxidized porous silicon interferometer for determination of relative protein binding affinity through non-covalent capture probe immobilization Physica Status Solidi (a) Applications and Materials Science. 204: 1444-1448. DOI: 10.1002/pssa.200674380  1
2007 Alvarez SD, Schwartz MP, Migliori B, Rang CU, Chao L, Sailor MJ. Using a porous silicon photonic crystal for bacterial cell-based biosensing Physica Status Solidi (a) Applications and Materials Science. 204: 1439-1443. DOI: 10.1002/pssa.200674379  1
2006 Poon AF, Chao L. Functional origins of fitness effect-sizes of compensatory mutations in the DNA bacteriophage phiX174. Evolution; International Journal of Organic Evolution. 60: 2032-43. PMID 17133860 DOI: 10.1554/06-013.1  1
2006 Ackermann M, Chao L. DNA sequences shaped by selection for stability Plos Genetics. 2: 224-230. DOI: 10.1371/journal.pgen.0020022  1
2005 Silander OK, Weinreich DM, Wright KM, O'Keefe KJ, Rang CU, Turner PE, Chao L. Widespread genetic exchange among terrestrial bacteriophages. Proceedings of the National Academy of Sciences of the United States of America. 102: 19009-14. PMID 16365305 DOI: 10.1073/pnas.0503074102  1
2005 Weinreich DM, Chao L. Rapid evolutionary escape by large populations from local fitness peaks is likely in nature. Evolution; International Journal of Organic Evolution. 59: 1175-82. PMID 16050095  1
2005 Weinreich DM, Watson RA, Chao L. Perspective: Sign epistasis and genetic constraint on evolutionary trajectories. Evolution; International Journal of Organic Evolution. 59: 1165-74. PMID 16050094  1
2005 Poon A, Chao L. The rate of compensatory mutation in the DNA bacteriophage phiX174. Genetics. 170: 989-99. PMID 15911582 DOI: 10.1534/genetics.104.039438  1
2005 Poon A, Davis BH, Chao L. The coupon collector and the suppressor mutation: estimating the number of compensatory mutations by maximum likelihood. Genetics. 170: 1323-32. PMID 15879511 DOI: 10.1534/genetics.104.037259  1
2004 Froissart R, Wilke CO, Montville R, Remold SK, Chao L, Turner PE. Co-infection weakens selection against epistatic mutations in RNA viruses. Genetics. 168: 9-19. PMID 15454523 DOI: 10.1534/genetics.104.030205  1
2004 Burch CL, Chao L. Epistasis and its relationship to canalization in the RNA virus phi 6. Genetics. 167: 559-67. PMID 15238511 DOI: 10.1534/genetics.103.021196  1
2004 Poon A, Chao L. Drift increases the advantage of sex in RNA bacteriophage Phi6. Genetics. 166: 19-24. PMID 15020402 DOI: 10.1534/genetics.166.1.19  1
2004 Ackermann M, Chao L. Evolution of cooperation: Two for One? Current Biology. 14: R73-R74. PMID 14738754 DOI: 10.1016/j.cub.2003.12.049  1
2003 Dahlberg C, Chao L. Amelioration of the Cost of Conjugative Plasmid Carriage in Eschericha coli K12 Genetics. 165: 1641-1649. PMID 14704155  1
2003 Rang C, Galen JE, Kaper JB, Chao L. Fitness cost of the green fluorescent protein in gastrointestinal bacteria Canadian Journal of Microbiology. 49: 531-537. PMID 14608419 DOI: 10.1139/w03-072  1
2003 de Visser JA, Hermisson J, Wagner GP, Ancel Meyers L, Bagheri-Chaichian H, Blanchard JL, Chao L, Cheverud JM, Elena SF, Fontana W, Gibson G, Hansen TF, Krakauer D, Lewontin RC, Ofria C, et al. Perspective: Evolution and detection of genetic robustness. Evolution; International Journal of Organic Evolution. 57: 1959-72. PMID 14575319  1
2003 Turner PE, Chao L. Escape from Prisoner's Dilemma in RNA phage phi6. The American Naturalist. 161: 497-505. PMID 12699226 DOI: 10.1086/367880  1
2003 Lorch PD, Chao L. Selection for multiple mating in females due to mates that reduce female fitness Behavioral Ecology. 14: 679-686. DOI: 10.1093/beheco/arg045  1
2003 Lythgoe KA, Chao L. Mechanisms of coexistence of a bacteria and a bacteriophage in a spatially homogeneous environment Ecology Letters. 6: 326-334. DOI: 10.1046/j.1461-0248.2003.00433.x  1
2002 Chao L, Rang CU, Wong LE. Distribution of spontaneous mutants and inferences about the replication mode of the RNA bacteriophage φ6 Journal of Virology. 76: 3276-3281. PMID 11884552 DOI: 10.1128/JVI.76.7.3276-3281.2002  1
2001 Rang C, Midtvedt T, Molin S, Chao L. Chemostat modeling of Escherichia coli persistence in conventionalized mono-associated and streptomycin-treated mice Canadian Journal of Microbiology. 47: 86-90. PMID 15049455 DOI: 10.1139/cjm-47-1-86  1
2000 Chao L, Hanley KA, Burch CL, Dahlberg C, Turner PE. Kin selection and parasite evolution: higher and lower virulence with hard and soft selection. The Quarterly Review of Biology. 75: 261-75. PMID 11008699  1
2000 Burch CL, Chao L. Evolvability of an RNA virus is determined by its mutational neighbourhood. Nature. 406: 625-8. PMID 10949302 DOI: 10.1038/35020564  1
2000 Chao L. The meaning of life Bioscience. 50: 245-250.  1
1999 Rang CU, Licht TR, Midtvedt T, Conway PL, Chao L, Krogfelt KA, Cohen PS, Molin S. Estimation of growth rates of Escherichia coli BJ4 in streptomycin- treated and previously germfree mice by in situ rRNA hybridization Clinical and Diagnostic Laboratory Immunology. 6: 434-436. PMID 10225851  1
1999 Turner PE, Chao L. Prisoner's dilemma in an RNA virus. Nature. 398: 441-3. PMID 10201376 DOI: 10.1038/18913  1
1999 Burch CL, Chao L. Evolution by small steps and rugged landscapes in the RNA virus phi6. Genetics. 151: 921-7. PMID 10049911  1
1999 Turner PE, Burch CL, Hanley KA, Chao L. Hybrid frequencies confirm limit to coinfection in the RNA bacteriophage phi6. Journal of Virology. 73: 2420-4. PMID 9971826  1
1998 Turner PE, Chao L. Sex and the evolution of intrahost competition in RNA virus phi6. Genetics. 150: 523-32. PMID 9755186  1
1997 Fenster CB, Galloway LF, Chao L. Epistasis and its consequences for the evolution of natural populations. Trends in Ecology & Evolution. 12: 282-6. PMID 21238076 DOI: 10.1016/S0169-5347(97)81027-0  1
1997 Chao L. Evolution of sex and the molecular clock in RNA viruses Gene. 205: 301-308. PMID 9461404 DOI: 10.1016/S0378-1119(97)00405-8  1
1997 Chao L, Tran TT. The advantage of sex in the RNA virus φ6 Genetics. 147: 953-959. PMID 9383044  1
1997 Chao L. Evolution of polyandry in a communal breeding system Behavioral Ecology. 8: 668-674.  1
1996 Francino MP, Chao L, Riley MA, Ochman H. Asymmetries generated by transcription-coupled repair in enterobacterial genes. Science (New York, N.Y.). 272: 107-9. PMID 8600517  1
1996 Rang CU, Kennan RM, Midtvedt T, Chao L, Conway PL. Transfer of the plasmid RP1 in vivo in germ free mice and in vitro in gut extracts and laboratory media Fems Microbiology Ecology. 19: 133-140. DOI: 10.1016/0168-6496(95)00087-9  1
1993 Stephan W, Chao L, Smale JG. The advance of Muller's ratchet in a haploid asexual population: approximate solutions based on diffusion theory. Genetical Research. 61: 225-31. PMID 8365659  1
1992 Chao L. Evolution of sex in RNA viruses Trends in Ecology and Evolution. 7: 147-151. DOI: 10.1016/0169-5347(92)90207-R  1
1992 Chao L. Reply from Lin Chao Trends in Ecology and Evolution. 7: 278.  1
1991 Chao L. Levels of selection, evolution of sex in RNA viruses, and the origin of life Journal of Theoretical Biology. 153: 229-246. PMID 1787738 DOI: 10.1016/S0022-5193(05)80424-2  1
1990 Chao L. Fitness of RNA virus decreased by Muller's ratchet Nature. 348: 454-455. PMID 2247152 DOI: 10.1038/348454a0  1
1985 Chao L, Ramsdell G. The effects of wall populations on coexistence of bacteria in the liquid phase of chemostat cultures Journal of General Microbiology. 131: 1229-1236. PMID 3894573  1
1985 Chao L, McBroom SM. Evolution of transposable elements: An IS10 insertion increases fitness in Escherichia coli Molecular Biology and Evolution. 2: 359-369. PMID 2835575  1
1983 Chao L, Cox EC. COMPETITION BETWEEN HIGH AND LOW MUTATING STRAINS OF ESCHERICHIA COLI. Evolution; International Journal of Organic Evolution. 37: 125-134. PMID 28568016 DOI: 10.1111/j.1558-5646.1983.tb05521.x  1
1983 Chao L, Vargas C, Spear BB, Cox EC. Transposable elements as mutator genes in evolution. Nature. 303: 633-5. PMID 6304533 DOI: 10.1038/303633a0  1
1983 Chao L, Cox EC. Competition between high and low mutating strains of Escherichia coli Evolution. 37: 125-134.  1
1981 Chao L, Levin BR. Structured habitats and the evolution of anticompetitor toxins in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 78: 6324-8. PMID 7031647  1
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