| Year |
Citation |
Score |
| 2020 |
Scavo Lord K, Lesneski KC, Bengtsson ZA, Kuhn KM, Madin J, Cheung B, Ewa R, Taylor JF, Burmester EM, Morey J, Kaufman L, Finnerty JR. Multi-Year Viability of a Reef Coral Population Living on Mangrove Roots Suggests an Important Role for Mangroves in the Broader Habitat Mosaic of Corals Frontiers in Marine Science. 7. DOI: 10.3389/Fmars.2020.00377 |
0.757 |
|
| 2018 |
Burmester EM, Breef-Pilz A, Lawrence NF, Kaufman L, Finnerty JR, Rotjan RD. The impact of autotrophic versus heterotrophic nutritional pathways on colony health and wound recovery in corals. Ecology and Evolution. 8: 10805-10816. PMID 30519408 DOI: 10.1002/Ece3.4531 |
0.742 |
|
| 2017 |
Mansfield KM, Carter NM, Nguyen L, Cleves PA, Alshanbayeva A, Williams LM, Crowder C, Penvose AR, Finnerty JR, Weis VM, Siggers TW, Gilmore TD. Transcription factor NF-κB is modulated by symbiotic status in a sea anemone model of cnidarian bleaching. Scientific Reports. 7: 16025. PMID 29167511 DOI: 10.1038/S41598-017-16168-W |
0.306 |
|
| 2017 |
Burmester E, Finnerty J, Kaufman L, Rotjan R. Temperature and symbiosis affect lesion recovery in experimentally wounded, facultatively symbiotic temperate corals Marine Ecology Progress Series. 570: 87-99. DOI: 10.3354/Meps12114 |
0.704 |
|
| 2015 |
Traylor-Knowles NG, Kane EG, Sombatsaphay V, Finnerty JR, Reitzel AM. Sex-specific and developmental expression of Dmrt genes in the starlet sea anemone, Nematostella vectensis. Evodevo. 6: 13. PMID 25984291 DOI: 10.1186/S13227-015-0013-7 |
0.79 |
|
| 2015 |
Finnerty JR, Gilmore TD. Methods for analyzing the evolutionary relationship of NF-κB proteins using free, web-driven bioinformatics and phylogenetic tools. Methods in Molecular Biology (Clifton, N.J.). 1280: 631-46. PMID 25736776 DOI: 10.1007/978-1-4939-2422-6_37 |
0.368 |
|
| 2014 |
Stefanik DJ, Lubinski TJ, Granger BR, Byrd AL, Reitzel AM, DeFilippo L, Lorenc A, Finnerty JR. Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a parasitic cnidarian. Bmc Genomics. 15: 71. PMID 24467778 DOI: 10.1186/1471-2164-15-71 |
0.79 |
|
| 2013 |
Stefanik DJ, Friedman LE, Finnerty JR. Collecting, rearing, spawning and inducing regeneration of the starlet sea anemone, Nematostella vectensis. Nature Protocols. 8: 916-23. PMID 23579780 DOI: 10.1038/Nprot.2013.044 |
0.771 |
|
| 2013 |
Wolenski FS, Layden MJ, Martindale MQ, Gilmore TD, Finnerty JR. Characterizing the spatiotemporal expression of RNAs and proteins in the starlet sea anemone, Nematostella vectensis. Nature Protocols. 8: 900-15. PMID 23579779 DOI: 10.1038/Nprot.2013.014 |
0.593 |
|
| 2013 |
Stefanik DJ, Wolenski FS, Friedman LE, Gilmore TD, Finnerty JR. Isolation of DNA, RNA and protein from the starlet sea anemone Nematostella vectensis. Nature Protocols. 8: 892-9. PMID 23579778 DOI: 10.1038/Nprot.2012.151 |
0.752 |
|
| 2013 |
Gilmore TD, Tarrant AM, Finnerty JR. A report from the second Nematostella vectensis research conference. Development Genes and Evolution. 223: 207-11. PMID 23314922 DOI: 10.1007/S00427-012-0434-4 |
0.353 |
|
| 2013 |
Wolenski FS, Bradham CA, Finnerty JR, Gilmore TD. NF-κB is required for cnidocyte development in the sea anemone Nematostella vectensis. Developmental Biology. 373: 205-15. PMID 23063796 DOI: 10.1016/J.Ydbio.2012.10.004 |
0.354 |
|
| 2013 |
Reitzel AM, Chu T, Edquist S, Genovese C, Church C, Tarrant AM, Finnerty JR. Physiological and developmental responses to temperature by the sea anemone Nematostella vectensis Marine Ecology Progress Series. 484: 115-130. DOI: 10.3354/Meps10281 |
0.589 |
|
| 2011 |
Wolenski FS, Chandani S, Stefanik DJ, Jiang N, Chu E, Finnerty JR, Gilmore TD. Two polymorphic residues account for the differences in DNA binding and transcriptional activation by NF-κB proteins encoded by naturally occurring alleles in Nematostella vectensis. Journal of Molecular Evolution. 73: 325-36. PMID 22198650 DOI: 10.1007/S00239-011-9479-7 |
0.774 |
|
| 2011 |
Traylor-Knowles N, Granger BR, Lubinski TJ, Parikh JR, Garamszegi S, Xia Y, Marto JA, Kaufman L, Finnerty JR. Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis. Bmc Genomics. 12: 585. PMID 22126435 DOI: 10.1186/1471-2164-12-585 |
0.783 |
|
| 2011 |
Musson MC, Jepeal LI, Finnerty JR, Wolfe MM. Evolutionary expression of glucose-dependent-insulinotropic polypeptide (GIP). Regulatory Peptides. 171: 26-34. PMID 21723886 DOI: 10.1016/J.Regpep.2011.06.001 |
0.315 |
|
| 2011 |
Wolenski FS, Garbati MR, Lubinski TJ, Traylor-Knowles N, Dresselhaus E, Stefanik DJ, Goucher H, Finnerty JR, Gilmore TD. Characterization of the core elements of the NF-κB signaling pathway of the sea anemone Nematostella vectensis. Molecular and Cellular Biology. 31: 1076-87. PMID 21189285 DOI: 10.1128/Mcb.00927-10 |
0.749 |
|
| 2011 |
Ray PS, Sullivan JC, Jia J, Francis J, Finnerty JR, Fox PL. Evolution of function of a fused metazoan tRNA synthetase. Molecular Biology and Evolution. 28: 437-47. PMID 20829344 DOI: 10.1093/Molbev/Msq246 |
0.57 |
|
| 2010 |
Mazza ME, Pang K, Reitzel AM, Martindale MQ, Finnerty JR. A conserved cluster of three PRD-class homeobox genes (homeobrain, rx and orthopedia) in the Cnidaria and Protostomia. Evodevo. 1: 3. PMID 20849646 DOI: 10.1186/2041-9139-1-3 |
0.786 |
|
| 2010 |
Traylor-Knowles N, Hansen U, Dubuc TQ, Martindale MQ, Kaufman L, Finnerty JR. The evolutionary diversification of LSF and Grainyhead transcription factors preceded the radiation of basal animal lineages. Bmc Evolutionary Biology. 10: 101. PMID 20398424 DOI: 10.1186/1471-2148-10-101 |
0.797 |
|
| 2010 |
Reitzel AM, Sullivan JC, Finnerty JR. Discovering SNPs in protein coding regions with stellasnp: Illustrating the characterization and geographic distribution of polymorphisms in the estuarine anemone nematostella vectensis Estuaries and Coasts. 33: 930-943. DOI: 10.1007/S12237-009-9231-3 |
0.697 |
|
| 2009 |
Sullivan JC, Wolenski FS, Reitzel AM, French CE, Traylor-Knowles N, Gilmore TD, Finnerty JR. Two alleles of NF-kappaB in the sea anemone Nematostella vectensis are widely dispersed in nature and encode proteins with distinct activities. Plos One. 4: e7311. PMID 19806194 DOI: 10.1371/Journal.Pone.0007311 |
0.786 |
|
| 2009 |
Burton PM, Finnerty JR. Conserved and novel gene expression between regeneration and asexual fission in Nematostella vectensis. Development Genes and Evolution. 219: 79-87. PMID 19184098 DOI: 10.1007/S00427-009-0271-2 |
0.756 |
|
| 2009 |
Finnerty JR, Mazza ME, Jezewski PA. Domain duplication, divergence, and loss events in vertebrate Msx paralogs reveal phylogenomically informed disease markers. Bmc Evolutionary Biology. 9: 18. PMID 19154605 DOI: 10.1186/1471-2148-9-18 |
0.776 |
|
| 2009 |
Reitzel AM, Daly M, Sullivan JC, Finnerty JR. Comparative anatomy and histology of developmental and parasitic stages in the life cycle of the lined sea anemone Edwardsiella lineata. The Journal of Parasitology. 95: 100-12. PMID 18656992 DOI: 10.1645/Ge-1623.1 |
0.701 |
|
| 2008 |
Sullivan JC, Sher D, Eisenstein M, Shigesada K, Reitzel AM, Marlow H, Levanon D, Groner Y, Finnerty JR, Gat U. The evolutionary origin of the Runx/CBFbeta transcription factors--studies of the most basal metazoans. Bmc Evolutionary Biology. 8: 228. PMID 18681949 DOI: 10.1186/1471-2148-8-228 |
0.799 |
|
| 2008 |
Reitzel AM, Sullivan JC, Traylor-Knowles N, Finnerty JR. Genomic survey of candidate stress-response genes in the estuarine anemone Nematostella vectensis. The Biological Bulletin. 214: 233-54. PMID 18574101 DOI: 10.2307/25470666 |
0.803 |
|
| 2008 |
Moran Y, Weinberger H, Reitzel AM, Sullivan JC, Kahn R, Gordon D, Finnerty JR, Gurevitz M. Intron retention as a posttranscriptional regulatory mechanism of neurotoxin expression at early life stages of the starlet anemone Nematostella vectensis. Journal of Molecular Biology. 380: 437-43. PMID 18538344 DOI: 10.1016/J.Jmb.2008.05.011 |
0.714 |
|
| 2008 |
Moran Y, Weinberger H, Sullivan JC, Reitzel AM, Finnerty JR, Gurevitz M. Concerted evolution of sea anemone neurotoxin genes is revealed through analysis of the Nematostella vectensis genome. Molecular Biology and Evolution. 25: 737-47. PMID 18222944 DOI: 10.1093/Molbev/Msn021 |
0.773 |
|
| 2008 |
Sullivan JC, Reitzel AM, Finnerty JR. Upgrades to StellaBase facilitate medical and genetic studies on the starlet sea anemone, Nematostella vectensis. Nucleic Acids Research. 36: D607-11. PMID 17982171 DOI: 10.1093/Nar/Gkm941 |
0.74 |
|
| 2008 |
Reitzel AM, Darling JA, Sullivan JC, Finnerty JR. Global population genetic structure of the starlet anemone Nematostella vectensis: Multiple introductions and implications for conservation policy Biological Invasions. 10: 1197-1213. DOI: 10.1007/S10530-007-9196-8 |
0.712 |
|
| 2007 |
Reitzel AM, Sullivan JC, Brown BK, Chin DW, Cira EK, Edquist SK, Genco BM, Joseph OC, Kaufman CA, Kovitvongsa K, Muñoz MM, Negri TL, Taffel JR, Zuehlke RT, Finnerty JR. Ecological and developmental dynamics of a host-parasite system involving a sea anemone and two ctenophores. The Journal of Parasitology. 93: 1392-402. PMID 18314686 DOI: 10.1645/Ge-1250.1 |
0.698 |
|
| 2007 |
Sullivan JC, Finnerty JR. A surprising abundance of human disease genes in a simple "basal" animal, the starlet sea anemone (Nematostella vectensis). Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 50: 689-92. PMID 17893746 DOI: 10.1139/g07-045 |
0.584 |
|
| 2007 |
Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, ... Finnerty JR, et al. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science (New York, N.Y.). 317: 86-94. PMID 17615350 DOI: 10.1126/Science.1139158 |
0.633 |
|
| 2007 |
Mazza ME, Pang K, Martindale MQ, Finnerty JR. Genomic organization, gene structure, and developmental expression of three clustered otx genes in the sea anemone Nematostella vectensis. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 308: 494-506. PMID 17377951 DOI: 10.1002/Jez.B.21158 |
0.82 |
|
| 2007 |
Sullivan JC, Ryan JF, Mullikin JC, Finnerty JR. Conserved and novel Wnt clusters in the basal eumetazoan Nematostella vectensis. Development Genes and Evolution. 217: 235-9. PMID 17310352 DOI: 10.1007/S00427-007-0136-5 |
0.686 |
|
| 2007 |
Ryan JF, Mazza ME, Pang K, Matus DQ, Baxevanis AD, Martindale MQ, Finnerty JR. Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis. Plos One. 2: e153. PMID 17252055 DOI: 10.1371/Journal.Pone.0000153 |
0.797 |
|
| 2007 |
Sullivan JC, Kalaitzidis D, Gilmore TD, Finnerty JR. Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis. Development Genes and Evolution. 217: 63-72. PMID 17120026 DOI: 10.1007/S00427-006-0111-6 |
0.627 |
|
| 2007 |
Reitzel AM, Burton PM, Krone C, Finnerty JR. Comparison of developmental trajectories in the starlet sea anemone Nematostella vectensis: Embryogenesis, regeneration, and two forms of asexual fission Invertebrate Biology. 126: 99-112. DOI: 10.1111/J.1744-7410.2007.00081.X |
0.782 |
|
| 2006 |
Reitzel AM, Sullivan JC, Finnerty JR. Qualitative shift to indirect development in the parasitic sea anemone Edwardsiella lineata. Integrative and Comparative Biology. 46: 827-37. PMID 21672788 DOI: 10.1093/Icb/Icl032 |
0.706 |
|
| 2006 |
Sullivan JC, Reitzel AM, Finnerty JR. A high percentage of introns in human genes were present early in animal evolution: evidence from the basal metazoan Nematostella vectensis. Genome Informatics. International Conference On Genome Informatics. 17: 219-29. PMID 17503371 |
0.75 |
|
| 2006 |
Ryan JF, Burton PM, Mazza ME, Kwong GK, Mullikin JC, Finnerty JR. The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis. Genome Biology. 7: R64. PMID 16867185 DOI: 10.1186/Gb-2006-7-7-R64 |
0.79 |
|
| 2006 |
Sullivan JC, Ryan JF, Watson JA, Webb J, Mullikin JC, Rokhsar D, Finnerty JR. StellaBase: the Nematostella vectensis Genomics Database. Nucleic Acids Research. 34: D495-9. PMID 16381919 DOI: 10.1093/Nar/Gkj020 |
0.701 |
|
| 2006 |
Sullivan JC, Buscetta KJ, Michener RH, Whitaker JO, Finnerty JR, Kunz TH. Models developed from δ13C and δ15N of skin tissue indicate non-specific habitat use by the big brown bat (Eptesicus fuscus) Ecoscience. 13: 11-22. DOI: 10.2980/1195-6860(2006)13[11:Mdfcan]2.0.Co;2 |
0.541 |
|
| 2006 |
Sullivan JC, Reitzel AM, Finnerty JR. A High Percentage of Introns in Human Genes Were Present Early in Animal Evolution: Evidence from the Basal Metazoan Nematostella vectensis:Evidence from the Basal Metazoan Nematostella vectensis Genome Informatics. 17: 219-229. DOI: 10.11234/Gi1990.17.219 |
0.734 |
|
| 2006 |
Darling JA, Reitzel AM, Finnerty JR. Characterization of microsatellite loci in the widely introduced estuarine anemone Nematostella vectensis Molecular Ecology Notes. 6: 803-805. DOI: 10.1111/J.1471-8286.2006.01350.X |
0.599 |
|
| 2005 |
Finnerty JR. Did internal transport, rather than directed locomotion, favor the evolution of bilateral symmetry in animals? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 27: 1174-80. PMID 16237677 DOI: 10.1002/Bies.20299 |
0.352 |
|
| 2005 |
Darling JA, Reitzel AR, Burton PM, Mazza ME, Ryan JF, Sullivan JC, Finnerty JR. Rising starlet: the starlet sea anemone, Nematostella vectensis. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 27: 211-21. PMID 15666346 DOI: 10.1002/Bies.20181 |
0.781 |
|
| 2005 |
Rieger RM, Ladurner P, Hobmayer B, Martindale MQ, Finnerty JR. A Clue to the Origin of the Bilateria? Science (New York, N.Y.). 307: 353c-355c. PMID 15664903 DOI: 10.1126/Science.307.5708.353C |
0.475 |
|
| 2004 |
Darling JA, Reitzel AM, Finnerty JR. Regional population structure of a widely introduced estuarine invertebrate: Nematostella vectensis Stephenson in New England. Molecular Ecology. 13: 2969-81. PMID 15367113 DOI: 10.1111/J.1365-294X.2004.02313.X |
0.616 |
|
| 2004 |
Finnerty JR, Pang K, Burton P, Paulson D, Martindale MQ. Origins of bilateral symmetry: Hox and dpp expression in a sea anemone. Science (New York, N.Y.). 304: 1335-7. PMID 15131263 DOI: 10.1126/Science.1091946 |
0.805 |
|
| 2004 |
Martindale MQ, Pang K, Finnerty JR. Investigating the origins of triploblasty: 'mesodermal' gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum, Cnidaria; class, Anthozoa). Development (Cambridge, England). 131: 2463-74. PMID 15128674 DOI: 10.1242/Dev.01119 |
0.731 |
|
| 2003 |
Finnerty JR. The origins of axial patterning in the metazoa: how old is bilateral symmetry? The International Journal of Developmental Biology. 47: 523-9. PMID 14756328 DOI: 10.1387/Ijdb.14756328 |
0.359 |
|
| 2003 |
Rokas A, King N, Finnerty J, Carroll SB. Conflicting phylogenetic signals at the base of the metazoan tree. Evolution & Development. 5: 346-59. PMID 12823451 DOI: 10.1046/J.1525-142X.2003.03042.X |
0.409 |
|
| 2003 |
Finnerty JR, Paulson D, Burton P, Pang K, Martindale MQ. Early evolution of a homeobox gene: the parahox gene Gsx in the Cnidaria and the Bilateria. Evolution & Development. 5: 331-45. PMID 12823450 DOI: 10.1046/J.1525-142X.2003.03041.X |
0.817 |
|
| 2003 |
Schneider SQ, Finnerty JR, Martindale MQ. Protein evolution: structure-function relationships of the oncogene beta-catenin in the evolution of multicellular animals. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 295: 25-44. PMID 12548541 DOI: 10.1002/Jez.B.6 |
0.551 |
|
| 2003 |
Ryan JF, Finnerty JR. CnidBase: The Cnidarian Evolutionary Genomics Database. Nucleic Acids Research. 31: 159-63. PMID 12519972 DOI: 10.1093/Nar/Gkg116 |
0.612 |
|
| 2002 |
Martindale MQ, Finnerty JR, Henry JQ. The Radiata and the evolutionary origins of the bilaterian body plan. Molecular Phylogenetics and Evolution. 24: 358-65. PMID 12220977 DOI: 10.1016/S1055-7903(02)00208-7 |
0.56 |
|
| 2001 |
Finnerty JR. Cnidarians Reveal Intermediate Stages in the Evolution of Hox Clusters and Axial Complexity1 American Zoologist. 41: 608-620. DOI: 10.1668/0003-1569(2001)041[0608:Crisit]2.0.Co;2 |
0.363 |
|
| 2000 |
Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, Maller B, Hayward DC, Ball EE, Degnan B, Müller P, Spring J, Srinivasan A, Fishman M, Finnerty J, Corbo J, et al. Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature. 408: 86-9. PMID 11081512 DOI: 10.1038/35040556 |
0.543 |
|
| 1999 |
Finnerty JR, Martindale MQ. Ancient origins of axial patterning genes: Hox genes and ParaHox genes in the Cnidaria. Evolution & Development. 1: 16-23. PMID 11324016 DOI: 10.1046/J.1525-142X.1999.99010.X |
0.633 |
|
| 1998 |
Finnerty JR, Martindale MQ. The evolution of the Hox cluster: insights from outgroups. Current Opinion in Genetics & Development. 8: 681-7. PMID 9914202 DOI: 10.1016/S0959-437X(98)80037-3 |
0.598 |
|
| 1998 |
Finnerty JR. Homeoboxes in sea anemones and other nonbilaterian animals: implications for the evolution of the Hox cluster and the zootype. Current Topics in Developmental Biology. 40: 211-54. PMID 9673852 DOI: 10.1016/S0070-2153(08)60368-3 |
0.434 |
|
| 1997 |
Finnerty JR, Martindale MQ. Homeoboxes in sea anemones (Cnidaria:Anthozoa): a PCR-based survey of Nematostella vectensis and Metridium senile. The Biological Bulletin. 193: 62-76. PMID 9290214 DOI: 10.2307/1542736 |
0.593 |
|
| 1996 |
Finnerty JR, Master VA, Irvine S, Kourakis MJ, Warriner S, Martindale MQ. Homeobox genes in the Ctenophora: identification of paired-type and Hox homologues in the atentaculate ctenophore, Beroë ovata. Molecular Marine Biology and Biotechnology. 5: 249-58. PMID 8983194 |
0.572 |
|
| 1994 |
Finnerty JR, Block BA. Response. Science (New York, N.Y.). 265: 1250-1. PMID 17787592 DOI: 10.1126/science.265.5176.1250 |
0.372 |
|
| 1994 |
Block BA, Finnerty JR. Endothermy in fishes: a phylogenetic analysis of constraints, predispositions, and selection pressures Environmental Biology of Fishes. 40: 283-302. DOI: 10.1007/BF00002518 |
0.437 |
|
| 1994 |
Block BA, Finnerty JR. Endothermy in fishes: a phylogenetic analysis of constraints, predispositions, and selection pressures Environmental Biology of Fishes. 40: 283-302. DOI: 10.1007/Bf00002518 |
0.508 |
|
| 1994 |
Johnson GD, Baldwin CC, Finnerty JR, Block BA. Accounting for endothermy in fishes Science. 265: 1249-1251. |
0.437 |
|
| 1994 |
Johnson GD, Baldwin CC, Finnerty JR, Block BA. Accounting for endothermy in fishes Science. 265: 1249-1251. |
0.437 |
|
| 1993 |
Block BA, Finnerty JR, Stewart AF, Kidd J. Evolution of endothermy in fish: mapping physiological traits on a molecular phylogeny. Science (New York, N.Y.). 260: 210-4. PMID 8469974 DOI: 10.1126/Science.8469974 |
0.528 |
|
| 1992 |
Finnerty JR, Block BA. Direct sequencing of mitochondrial DNA detects highly divergent haplotypes in blue marlin (Makaira nigricans). Molecular Marine Biology and Biotechnology. 1: 206-14. PMID 1308204 |
0.516 |
|
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