Jongmin Nam, Ph.D. - Publications

Affiliations: 
Biology California Institute of Technology, Pasadena, CA 
Area:
developmental gene regulatory network, cis-regulatory genomics, molecular evolution
Website:
http://www.its.caltech.edu/~jnam/

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Nam J. Multiplex cis-regulatory analysis. Methods in Cell Biology. 151: 159-176. PMID 30948006 DOI: 10.1016/Bs.Mcb.2019.01.009  0.419
2017 Guay CL, McQuade ST, Nam J. Single embryo-resolution quantitative analysis of reporters permits multiplex spatial cis-regulatory analysis. Developmental Biology. PMID 28099870 DOI: 10.1016/J.Ydbio.2017.01.010  0.353
2015 Kim YJ, Cho YJ, Kim DW, Yang JS, Kim H, Park S, Han YW, Yun MR, Lee HS, Kim AR, Heo DR, Kim JA, Kim SJ, Jung HD, Kim N, ... Nam JG, et al. Complete Genome Sequence of Middle East Respiratory Syndrome Coronavirus KOR/KNIH/002_05_2015, Isolated in South Korea. Genome Announcements. 3. PMID 26272558 DOI: 10.1128/genomeA.00787-15  0.33
2012 Nam J, Davidson EH. Barcoded DNA-tag reporters for multiplex cis-regulatory analysis. Plos One. 7: e35934. PMID 22563420 DOI: 10.1371/Journal.Pone.0035934  0.609
2010 Materna SC, Nam J, Davidson EH. High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development. Gene Expression Patterns : Gep. 10: 177-84. PMID 20398801 DOI: 10.1016/J.Gep.2010.04.002  0.729
2010 Nam J, Dong P, Tarpine R, Istrail S, Davidson EH. Functional cis-regulatory genomics for systems biology. Proceedings of the National Academy of Sciences of the United States of America. 107: 3930-5. PMID 20142491 DOI: 10.1073/Pnas.1000147107  0.651
2010 Nam J, Davidson EH. Quantitative analysis of cis-regulatory genes and networks Developmental Biology. 344: 516. DOI: 10.1016/J.Ydbio.2010.05.378  0.538
2007 Lee PY, Nam J, Davidson EH. Exclusive developmental functions of gatae cis-regulatory modules in the Strongylocentrorus purpuratus embryo. Developmental Biology. 307: 434-45. PMID 17570356 DOI: 10.1016/J.Ydbio.2007.05.005  0.6
2007 Nam J, Su YH, Lee PY, Robertson AJ, Coffman JA, Davidson EH. Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network. Developmental Biology. 306: 860-9. PMID 17451671 DOI: 10.1016/J.Ydbio.2007.03.033  0.725
2007 Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R, Bruskiewich R, Bureau T, Burr F, Costa de Oliveira A, Fuks G, ... ... Nam J, et al. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Research. 17: 175-83. PMID 17210932 DOI: 10.1101/Gr.5509507  0.539
2006 Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, ... ... Nam J, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science (New York, N.Y.). 314: 941-52. PMID 17095691 DOI: 10.1126/Science.1133609  0.509
2005 Nam J, Nei M. Evolutionary change of the numbers of homeobox genes in bilateral animals. Molecular Biology and Evolution. 22: 2386-94. PMID 16079247 DOI: 10.1093/Molbev/Msi229  0.62
2005 Nam J, Kaufmann K, Theissen G, Nei M. A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes. Nucleic Acids Research. 33: e12. PMID 15659573 DOI: 10.1093/Nar/Gni003  0.579
2004 Nam J, Kim J, Lee S, An G, Ma H, Nei M. Type I MADS-box genes have experienced faster birth-and-death evolution than type II MADS-box genes in angiosperms. Proceedings of the National Academy of Sciences of the United States of America. 101: 1910-5. PMID 14764899 DOI: 10.1073/Pnas.0308430100  0.604
2003 Lee S, Kim J, Son JS, Nam J, Jeong DH, Lee K, Jang S, Yoo J, Lee J, Lee DY, Kang HG, An G. Systematic reverse genetic screening of T-DNA tagged genes in rice for functional genomic analyses: MADS-box genes as a test case. Plant & Cell Physiology. 44: 1403-11. PMID 14701936 DOI: 10.1093/Pcp/Pcg156  0.367
2003 An S, Park S, Jeong DH, Lee DY, Kang HG, Yu JH, Hur J, Kim SR, Kim YH, Lee M, Han S, Kim SJ, Yang J, Kim E, Wi SJ, ... ... Nam J, et al. Generation and analysis of end sequence database for T-DNA tagging lines in rice. Plant Physiology. 133: 2040-7. PMID 14630961 DOI: 10.1104/Pp.103.030478  0.458
2003 Nam J, dePamphilis CW, Ma H, Nei M. Antiquity and evolution of the MADS-box gene family controlling flower development in plants. Molecular Biology and Evolution. 20: 1435-47. PMID 12777513 DOI: 10.1093/Molbev/Msg152  0.606
2000 Jeon JS, Lee S, Jung KH, Jun SH, Jeong DH, Lee J, Kim C, Jang S, Yang K, Nam J, An K, Han MJ, Sung RJ, Choi HS, Yu JH, et al. T-DNA insertional mutagenesis for functional genomics in rice. The Plant Journal : For Cell and Molecular Biology. 22: 561-70. PMID 10886776 DOI: 10.1046/J.1365-313X.2000.00767.X  0.388
2000 Jeon JS, Jang S, Lee S, Nam J, Kim C, Lee SH, Chung YY, Kim SR, Lee YH, Cho YG, An G. leafy hull sterile 1 is a homeotic mutation in a rice MADS box gene affecting rice flower development Plant Cell. 12: 871-884. PMID 10852934 DOI: 10.1105/Tpc.12.6.871  0.449
2000 Sung SK, Yu GH, Nam J, Jeong DH, An G. Developmentally regulated expression of two MADS-box genes, MdMADS3 and MdMADS4, in the morphogenesis of flower buds and fruits in apple Planta. 210: 519-528. PMID 10787044 DOI: 10.1007/S004250050040  0.43
1999 Nam J, Lee YK, Oak JH, An G, Lee IK. Identification of MADS genes from a brown alga,Sargassum fulvellum Journal of Plant Biology. 42: 81-84. DOI: 10.1007/Bf03031151  0.477
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