William R. Atchley, Ph.D. - Publications

Affiliations: 
Genetics North Carolina State University, Raleigh, NC 
Area:
Computational biology, molecular evolution
Website:
https://news.ncsu.edu/2011/03/atchley-honored-for-contributions/

81 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2012 McFerrin LG, Atchley WR. A novel N-terminal domain may dictate the glucose response of Mondo proteins. Plos One. 7: e34803. PMID 22506051 DOI: 10.1371/journal.pone.0034803  1
2012 Fronza R, Tramonti M, Atchley WR, Nardini C. Brain cancer prognosis: independent validation of a clinical bioinformatics approach. Journal of Clinical Bioinformatics. 2: 2. PMID 22297051 DOI: 10.1186/2043-9113-2-2  1
2012 Sailsbery JK, Atchley WR, Dean RA. Phylogenetic analysis and classification of the fungal bHLH domain. Molecular Biology and Evolution. 29: 1301-18. PMID 22114358 DOI: 10.1093/molbev/msr288  1
2011 McFerrin LG, Atchley WR. Evolution of the Max and Mlx networks in animals. Genome Biology and Evolution. 3: 915-37. PMID 21859806 DOI: 10.1093/gbe/evr082  1
2011 Atchley WR. Retrospective. Walter M. Fitch (1929-2011). Science (New York, N.Y.). 332: 804. PMID 21566183 DOI: 10.1126/science.1207426  1
2011 Fronza R, Tramonti M, Atchley WR, Nardini C. Joint analysis of transcriptional and post- transcriptional brain tumor data: searching for emergent properties of cellular systems. Bmc Bioinformatics. 12: 86. PMID 21450054 DOI: 10.1186/1471-2105-12-86  1
2008 Fernandes AD, Atchley WR. Site-specific evolutionary rates in proteins are better modeled as non-independent and strictly relative. Bioinformatics (Oxford, England). 24: 2177-83. PMID 18662926 DOI: 10.1093/bioinformatics/btn395  1
2008 Fernandes AD, Atchley WR. Biochemical and functional evidence of p53 homology is inconsistent with molecular phylogenetics for distant sequences. Journal of Molecular Evolution. 67: 51-67. PMID 18560747 DOI: 10.1007/s00239-008-9124-2  1
2008 Funk-Keenan J, Haire F, Woolard S, Atchley WR. Hepatic endopolyploidy as a cellular consequence of age-specific selection for rate of development in mice. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 310: 385-97. PMID 18247336 DOI: 10.1002/jez.b.21211  1
2007 Wang Z, Smith CE, Atchley WR. Application of complex demodulation on bZIP and bHLH-PAS protein domains. Mathematical Biosciences. 207: 204-18. PMID 17374384 DOI: 10.1016/j.mbs.2007.01.004  1
2007 Atchley WR, Zhao J. Molecular architecture of the DNA-binding region and its relationship to classification of basic helix-loop-helix proteins. Molecular Biology and Evolution. 24: 192-202. PMID 17041153 DOI: 10.1093/molbev/msl143  1
2006 Fernandes AD, Atchley WR. Gaussian quadrature formulae for arbitrary positive measures. Evolutionary Bioinformatics Online. 2: 251-9. PMID 19455218  1
2005 Buck MJ, Atchley WR. Networks of coevolving sites in structural and functional domains of serpin proteins. Molecular Biology and Evolution. 22: 1627-34. PMID 15858204 DOI: 10.1093/molbev/msi157  1
2005 Atchley WR, Fernandes AD. Sequence signatures and the probabilistic identification of proteins in the Myc-Max-Mad network. Proceedings of the National Academy of Sciences of the United States of America. 102: 6401-6. PMID 15851686 DOI: 10.1073/pnas.0408964102  1
2005 Atchley WR, Zhao J, Fernandes AD, Drüke T. Solving the protein sequence metric problem. Proceedings of the National Academy of Sciences of the United States of America. 102: 6395-400. PMID 15851683 DOI: 10.1073/pnas.0408677102  1
2003 Buck MJ, Atchley WR. Phylogenetic analysis of plant basic helix-loop-helix proteins. Journal of Molecular Evolution. 56: 742-50. PMID 12911037 DOI: 10.1007/s00239-002-2449-3  1
2002 Johnson ES, Wolff MF, Wernsman EA, Atchley WR, Shew HD. Origin of the black shank resistance gene, Ph, in tobacco cultivar Coker 371-Gold Plant Disease. 86: 1080-1084.  1
2001 Atchley WR, Lokot T, Wollenberg K, Dress A, Ragg H. Phylogenetic analyses of amino acid variation in the serpin proteins. Molecular Biology and Evolution. 18: 1502-11. PMID 11470841  1
2001 Ragg H, Lokot T, Kamp PB, Atchley WR, Dress A. Vertebrate serpins: construction of a conflict-free phylogeny by combining exon-intron and diagnostic site analyses. Molecular Biology and Evolution. 18: 577-84. PMID 11264410  1
2000 Kulkarni NH, Karavanich CA, Atchley WR, Anholt RR. Characterization and differential expression of a human gene family of olfactomedin-related proteins. Genetical Research. 76: 41-50. PMID 11006633 DOI: 10.1017/S0016672300004584  1
2000 Rhees BK, Atchley WR. Body weight and tail length divergence in mice selected for rate of development. The Journal of Experimental Zoology. 288: 151-64. PMID 10931498 DOI: 10.1002/1097-010X(20000815)288:2<151::AID-JEZ6>3.0.CO;2-6  1
2000 Atchley WR, Wei R, Crenshaw P. Cellular consequences in the brain and liver of age-specific selection for rate of development in mice. Genetics. 155: 1347-57. PMID 10880493  1
2000 Ernst CA, Rhees BK, Miao CH, Atchley WR. Effect of long-term selection for early postnatal growth rate on survival and prenatal development of transferred mouse embryos. Journal of Reproduction and Fertility. 118: 205-10. PMID 10793643  1
2000 Wollenberg KR, Atchley WR. Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap. Proceedings of the National Academy of Sciences of the United States of America. 97: 3288-91. PMID 10725404 DOI: 10.1073/pnas.070154797  1
2000 Lowry JA, Atchley WR. Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. Journal of Molecular Evolution. 50: 103-15. PMID 10684344 DOI: 10.1007/s002399910012  1
2000 Atchley WR, Wollenberg KR, Fitch WM, Terhalle W, Dress AW. Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis. Molecular Biology and Evolution. 17: 164-78. PMID 10666716  1
1999 Morgenstern B, Atchley WR. Evolution of bHLH transcription factors: modular evolution by domain shuffling? Molecular Biology and Evolution. 16: 1654-63. PMID 10605108  1
1999 Rhees BK, Ernst CA, Miao CH, Atchley WR. Uterine and postnatal maternal effects in mice selected for differential rate of early development. Genetics. 153: 905-17. PMID 10511566  1
1999 Ernst CA, Crenshaw PD, Atchley WR. Effect of selection for development rate on reproductive onset in female mice. Genetical Research. 74: 55-64. PMID 10505407 DOI: 10.1017/S001667239900381X  1
1999 Rosinski JA, Atchley WR. Molecular evolution of helix-turn-helix proteins. Journal of Molecular Evolution. 49: 301-9. PMID 10473770 DOI: 10.1007/PL00006552  1
1999 Atchley WR, Terhalle W, Dress A. Positional dependence, cliques, and predictive motifs in the bHLH protein domain. Journal of Molecular Evolution. 48: 501-16. PMID 10198117 DOI: 10.1007/PL00006494  1
1998 Morgenstern B, Atchley WR, Hahn K, Dress A. Segment-based scores for pairwise and multiple sequence alignments. Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 6: 115-21. PMID 9783216  1
1998 Rosinski JA, Atchley WR. Molecular evolution of the Myb family of transcription factors: evidence for polyphyletic origin. Journal of Molecular Evolution. 46: 74-83. PMID 9419227 DOI: 10.1007/PL00006285  1
1997 Atchley WR, Zhu J. Developmental quantitative genetics, conditional epigenetic variability and growth in mice. Genetics. 147: 765-76. PMID 9335611  1
1997 Atchley WR, Xu S, Cowley DE. Altering developmental trajectories in mice by restricted index selection. Genetics. 146: 629-40. PMID 9178012  1
1997 Atchley WR, Fitch WM. A natural classification of the basic helix-loop-helix class of transcription factors. Proceedings of the National Academy of Sciences of the United States of America. 94: 5172-6. PMID 9144210 DOI: 10.1073/pnas.94.10.5172  1
1996 Xu S, Atchley WR. Mapping quantitative trait loci for complex binary diseases using line crosses. Genetics. 143: 1417-24. PMID 8807312  1
1996 Xu S, Atchley WR. A Monte-Carlo algorithm for maximum likelihood estimation of variance components Genetics Selection Evolution. 28: 329-343.  1
1995 Xu S, Atchley WR. A random model approach to interval mapping of quantitative trait loci. Genetics. 141: 1189-97. PMID 8582623  1
1995 Xu S, Atchley WR. Heterozygosity of F2 from two segregating populations. The Journal of Heredity. 86: 477-80. PMID 8568213  1
1995 Vogl C, Atchley WR. Hormone gradients and cartilage cell kinetics. Cell Proliferation. 28: 453-69. PMID 7548445  1
1995 Atchley WR, Fitch WM. Myc and Max: molecular evolution of a family of proto-oncogene products and their dimerization partner. Proceedings of the National Academy of Sciences of the United States of America. 92: 10217-21. PMID 7479755 DOI: 10.1073/pnas.92.22.10217  1
1994 Atchley WR, Xu S, Vogl C. Developmental quantitative genetic models of evolutionary change. Developmental Genetics. 15: 92-103. PMID 8187352 DOI: 10.1002/dvg.1020150110  1
1994 Atchley WR, Fitch WM, Bronner-Fraser M. Molecular evolution of the MyoD family of transcription factors. Proceedings of the National Academy of Sciences of the United States of America. 91: 11522-6. PMID 7972095 DOI: 10.1073/pnas.91.24.11522  1
1994 Xu S, Atchley WR, Fitch WM. Phylogenetic inference under the pure drift model. Molecular Biology and Evolution. 11: 949-60. PMID 7815932  1
1993 Atchley WR, Fitch W. Genetic affinities of inbred mouse strains of uncertain origin. Molecular Biology and Evolution. 10: 1150-69. PMID 8277849  1
1993 Vogl C, Atchley WR, Cowley DE, Crenshaw P, Murray JD, Pomp D. The epigenetic influence of growth hormone on skeletal development. Growth, Development, and Aging : Gda. 57: 163-82. PMID 8244621  1
1993 Sage RD, Atchley WR, Capanna E. House mice as models in systematic biology Systematic Biology. 42: 523-561.  1
1992 Atchley WR, Cowley DE, Vogl C, Mclellan T. Evolutionary divergence, shape change, and genetic correlation structure in the rodent mandible Systematic Biology. 41: 196-221.  1
1992 Cowley DE, Atchley WR. Quantitative genetic models for development, epigenetic selection, and phenotypic evolution Evolution. 46: 495-518.  1
1991 Atchley WR, Fitch WM. Gene trees and the origins of inbred strains of mice. Science (New York, N.Y.). 254: 554-8. PMID 1948030  1
1991 Atchley WR, Hall BK. A model for development and evolution of complex morphological structures. Biological Reviews of the Cambridge Philosophical Society. 66: 101-57. PMID 1863686  1
1991 Cheverud JM, Hartman SE, Richtsmeier JT, Atchley WR. A quantitative genetic analysis of localized morphology in mandibles of inbred mice using finite element scaling analysis. Journal of Craniofacial Genetics and Developmental Biology. 11: 122-37. PMID 1761645  1
1989 Pomp D, Cowley DE, Eisen EJ, Atchley WR, Hawkins-Brown D. Donor and recipient genotype and heterosis effects on survival and prenatal growth of transferred mouse embryos. Journal of Reproduction and Fertility. 86: 493-500. PMID 2760878  1
1989 Cowley DE, Pomp D, Atchley WR, Eisen EJ, Hawkins-Brown D. The impact of maternal uterine genotype on postnatal growth and adult body size in mice. Genetics. 122: 193-203. PMID 2731729  1
1989 Atchley WR. Evolution of developmental systems American Naturalist. 134: 437-512. DOI: 10.1086/284989  1
1988 Atchley WR, Newman S, Cowley DE. Genetic divergence in mandible form in relation to molecular divergence in inbred mouse strains. Genetics. 120: 239-53. PMID 3220250  1
1987 Atchley WR. Developmental quantitative genetics and the evolution of ontogenies. Evolution. 41: 316-330.  1
1987 Fitch WM, Atchley WR. Response to Bonhomme et al. Biological Journal of the Linnean Society. 30: 59-61.  1
1985 Fitch WM, Atchley WR. Rapid mutations in mice? Science (New York, N.Y.). 230: 1408-9. PMID 17749682 DOI: 10.1126/science.230.4732.1408  1
1985 Riska B, Atchley WR. Genetics of growth predict patterns of brain-size evolution. Science (New York, N.Y.). 229: 668-71. PMID 17739380 DOI: 10.1126/science.229.4714.668  1
1985 Atchley WR, Plummer AA, Riska B. Genetic analysis of size-scaling patterns in the mouse mandible. Genetics. 111: 579-95. PMID 4054610  1
1985 Atchley WR, Plummer AA, Riska B. Genetics of mandible form in the mouse. Genetics. 111: 555-77. PMID 4054609  1
1985 Riska B, Rutledge JJ, Atchley WR. Covariance between direct and maternal genetic effects in mice, with a model of persistent environmental influences. Genetical Research. 45: 287-97. PMID 4029615  1
1985 Leamy L, Atchley W. Directional selection and developmental stability: Evidence from fluctuating asymmetry of morphometric characters in rats Growth. 49: 8-18. PMID 4007583  1
1985 Fitch WM, Atchley WR. Evolution in inbred strains of mice appears rapid. Science (New York, N.Y.). 228: 1169-75. PMID 4001935  1
1984 Riska B, Atchley WR, Rutledge JJ. A genetic analysis of targeted growth in mice. Genetics. 107: 79-101. PMID 6724298  1
1984 Atchley WR, Herring SW, Riska B, Plummer AA. Effects of the muscular dysgenesis gene on developmental stability in the mouse mandible. Journal of Craniofacial Genetics and Developmental Biology. 4: 179-89. PMID 6501560  1
1984 Atchley WR. The effect of selection on brain and body size association in rats. Genetical Research. 43: 289-98. PMID 6468929  1
1984 Atchley WR. Ontogeny, timing of development, and genetic variance-covariance structure. American Naturalist. 123: 519-540. DOI: 10.1086/284220  1
1983 Atchley WR. A genetic analysis of the mandible and maxilla in the rat. Journal of Craniofacial Genetics and Developmental Biology. 3: 409-22. PMID 6662910  1
1983 Cheverud JM, Rutledge JJ, Atchley WR. Quantitative genetics of development, genetic correlations among age-specific trait values and the evolution of ontogeny. Evolution. 37: 895-905.  1
1982 Atchley WR, Rutledge JJ, Cowley DE. A multivariate statistical analysis of direct and correlated response to selection in the rat. Evolution. 36: 677-698.  1
1980 Atchley WR. M-statistics and morphometric divergence Science. 208: 1059-1061.  1
1978 Atchley WR. Biological variability in the parthenogenetic grasshopper Warramaba virgo (Key) and its sexual relatives. II. The Western Australian taxa Evolution. 32: 375-388.  1
1977 Hensleigh DA, Atchley WR. Morphometric variability in natural and laboratory populations of Culicoides variipennis (Diptera: Ceratopogonidae). Journal of Medical Entomology. 14: 379-86. PMID 609067  1
1977 Atchley WR. Evolutionary consequences of parthogenesis: evidence from the Warramaba virgo complex. Proceedings of the National Academy of Sciences of the United States of America. 74: 1130-4. PMID 265559  1
1975 Atchley WR, Wirth WW. Two new western Culicoides (Diptera: Ceratopogonidae) which are vectors of filaria in the California valley quail. Canadian Journal of Zoology. 53: 1421-3. PMID 1203808  1
1974 Atchley WR. A quantitative taxonomic analysis of Leptoconops torrens and L. carteri (Diptera: Ceratopogonidae. Journal of Medical Entomology. 11: 467-70. PMID 4417780  1
1973 Atchley WR. A quantitative separation of the females of Culicoides (Selfia) denningi, C. (S.) hieroglyphicus and C. (S.) jamesi (Diptera: Ceratopogonidae). Journal of Medical Entomology. 10: 629-32. PMID 4779929  1
1971 Atchley WR. A comparative study of the cause and significance of morphological variation in adults and pupae of Culicoides: a factor analysis and multiple regression study Evolution. 25: 563-583.  1
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