William R. Atchley, Ph.D. - Related publications

Affiliations: 
Genetics North Carolina State University, Raleigh, NC 
Area:
Computational biology, molecular evolution
Website:
https://news.ncsu.edu/2011/03/atchley-honored-for-contributions/
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Prabh N, Tautz D. Frequent lineage-specific substitution rate changes support an episodic model for protein evolution. G3 (Bethesda, Md.). PMID 34542594 DOI: 10.1093/g3journal/jkab333   
2021 Chen Y, Liu B, Zhao Y, Yu W, Si W. Whole-Genome Duplication and Purifying Selection Contributes to the Functional Redundancy of Auxin Response Factor () Genes in Foxtail Millet ( L.). International Journal of Genomics. 2021: 2590665. PMID 34414231 DOI: 10.1155/2021/2590665   
2021 Tassia MG, David KT, Townsend JP, Halanych KM. TIAMMAt: Leveraging biodiversity to revise protein domain models, evidence from innate immunity. Molecular Biology and Evolution. PMID 34459919 DOI: 10.1093/molbev/msab258   
2021 Farré X, Molina R, Barteri F, Timmers PRHJ, Joshi PK, Oliva B, Acosta S, Esteve-Altava B, Navarro A, Muntané G. Comparative analysis of mammal genomes unveils key genomic variability for human lifespan. Molecular Biology and Evolution. PMID 34297086 DOI: 10.1093/molbev/msab219   
2021 Farré X, Molina R, Barteri F, Timmers PRHJ, Joshi PK, Oliva B, Acosta S, Esteve-Altava B, Navarro A, Muntané G. Comparative analysis of mammal genomes unveils key genomic variability for human lifespan. Molecular Biology and Evolution. PMID 34297086 DOI: 10.1093/molbev/msab219   
2021 Cavassim MIA, Andersen SU, Bataillon T, Schierup MH. Recombination facilitates adaptive evolution in rhizobial soil bacteria. Molecular Biology and Evolution. PMID 34410427 DOI: 10.1093/molbev/msab247   
2021 Wang Y, Xue P, Cao M, Yu T, Lane ST, Zhao H. Directed Evolution: Methodologies and Applications. Chemical Reviews. PMID 34297541 DOI: 10.1021/acs.chemrev.1c00260   
2021 Jackson T, Ishengoma E, Rhode C. Cross-species Exon Capture and Whole Exome Sequencing: Application, Utility and Challenges for Genomic Resource Development in Non-model Species. Marine Biotechnology (New York, N.Y.). PMID 34241713 DOI: 10.1007/s10126-021-10046-3   
2021 Huang Y, Sun M, Zhuang L, He J. Molecular Phylogenetic Analysis of the Family in Vertebrates. Genes. 12. PMID 34440364 DOI: 10.3390/genes12081190   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Jouffrey V, Leonard AS, Ahnert SE. Gene duplication and subsequent diversification strongly affect phenotypic evolvability and robustness. Royal Society Open Science. 8: 201636. PMID 34168886 DOI: 10.1098/rsos.201636   
2021 Jouffrey V, Leonard AS, Ahnert SE. Gene duplication and subsequent diversification strongly affect phenotypic evolvability and robustness. Royal Society Open Science. 8: 201636. PMID 34168886 DOI: 10.1098/rsos.201636   
2021 Sun Z, Zhang X, Zhou D, Zhou K, Li Q, Lin H, Lu W, Liu H, Lu J, Lin X, Li K, Xu T, Zhu M, Bao Q, Zhang H. Identification of Three Clf-Sdr Subfamily Proteins in , and Comparative Genomics Analysis of a Locus Encoding CWA Proteins in Species. Frontiers in Microbiology. 12: 691087. PMID 34394031 DOI: 10.3389/fmicb.2021.691087   
2021 Timmermans S, Libert C. Coding variants in mouse and rat model organisms: mousepost and ratpost. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 34313794 DOI: 10.1007/s00335-021-09898-w   
2021 Yang FX, Gao J, Wei YL, Ren R, Zhang GQ, Lu CQ, Jin JP, Ai Y, Wang YQ, Chen LJ, Ahmad S, Zhang DY, Sun WH, Tsai WC, Liu ZJ, et al. The genome of Cymbidium sinense revealed the evolution of orchid traits. Plant Biotechnology Journal. PMID 34342129 DOI: 10.1111/pbi.13676   
2021 Zhang D, Zhu Z, Li Y, Li X, Guan Z, Zheng J. Comparative Genomics of Reveals What Makes a Cosmopolitan Bacterium. Msystems. e0038321. PMID 34282940 DOI: 10.1128/mSystems.00383-21   
2021 Zhang JY, Roberts H, Flores DSC, Cutler AJ, Brown AC, Whalley JP, Mielczarek O, Buck D, Lockstone H, Xella B, Oliver K, Corton C, Betteridge E, Bashford-Rogers R, Knight JC, et al. Using de novo assembly to identify structural variation of eight complex immune system gene regions. Plos Computational Biology. 17: e1009254. PMID 34343164 DOI: 10.1371/journal.pcbi.1009254   
2021 Grettenberger CL. Novel spp. from Diverse Environments across the Globe. Msphere. e0006121. PMID 34287010 DOI: 10.1128/mSphere.00061-21   
2021 Butterfield ER, Abbott JC, Field MC. Automated Phylogenetic Analysis Using Best Reciprocal BLAST. Methods in Molecular Biology (Clifton, N.J.). 2369: 41-63. PMID 34313983 DOI: 10.1007/978-1-0716-1681-9_4   
2021 Deng S, Cai X, Kanu UC, Yuan S, Jin K, Shen Z. The complete mitogenome of (Cypriniformes: Gastromyzontidae) and phylogenetic implications. Mitochondrial Dna. Part B, Resources. 6: 2452-2454. PMID 34368444 DOI: 10.1080/23802359.2021.1955770   
2021 Stanton RA, Vlachos N, Halpin AL. GAMMA: a tool for the rapid identification, classification, and annotation of translated gene matches from sequencing data. Bioinformatics (Oxford, England). PMID 34415321 DOI: 10.1093/bioinformatics/btab607   
2021 Park J, Wang HH. Systematic dissection of σ sequence diversity and function in bacteria. Cell Reports. 36: 109590. PMID 34433066 DOI: 10.1016/j.celrep.2021.109590   
2021 Guo Y, Wariss HM, Zhang R. The complete chloroplast genome of (L.) Goldblatt & J. C. Manning (Leguminosae), an important medicinal plant species from Southern Africa. Mitochondrial Dna. Part B, Resources. 6: 2767-2769. PMID 34471699 DOI: 10.1080/23802359.2021.1967811   
2021 Illa SK, Mukherjee S, Nath S, Mukherjee A. Genome-Wide Scanning for Signatures of Selection Revealed the Putative Genomic Regions and Candidate Genes Controlling Milk Composition and Coat Color Traits in Sahiwal Cattle. Frontiers in Genetics. 12: 699422. PMID 34306039 DOI: 10.3389/fgene.2021.699422   
2021 Chen H, Li X, Wang Y, Zhu C, Huang H, Yang W, Li G. De Novo Transcriptomic Characterization Enables Novel Microsatellite Identification and Marker Development in . Life (Basel, Switzerland). 11. PMID 34440547 DOI: 10.3390/life11080803   
2021 Kim SH, Lee SJ, Jo E, Kim J, Kim JU, Kim JH, Park H, Chi YM. Genome of the Southern Giant Petrel Assembled Using Third-Generation DNA Sequencing and Linked Reads Reveals Evolutionary Traits of Southern Avian. Animals : An Open Access Journal From Mdpi. 11. PMID 34359174 DOI: 10.3390/ani11072046   
2021 Park J, Jung J, Kim KS, Park T. Complete mitochondrial genome of the commensal scale worm, (Grube, 1855) (Polychaeta: Polynoidae), collected from benthic habitat of the eastern coast of Korea. Mitochondrial Dna. Part B, Resources. 6: 2455-2457. PMID 34368445 DOI: 10.1080/23802359.2021.1955771   
2021 Zhang X, Sun Y, Landis JB, Shen J, Zhang H, Kuang T, Sun W, Sun J, Tiamiyu BB, Deng T, Sun H, Wang H. Transcriptomes of (Asteraceae) Provide Insights into High-Altitude Adaptation. Plants (Basel, Switzerland). 10. PMID 34451759 DOI: 10.3390/plants10081715   
2021 Yamit BL, Esther S, Metsada PC, Yuval S. De novo transcriptome characterization of Iris atropurpurea (the Royal Iris) and phylogenetic analysis of MADS-box and R2R3-MYB gene families. Scientific Reports. 11: 16246. PMID 34376711 DOI: 10.1038/s41598-021-95085-5   
2021 Willemin A, Lopez-Delisle L, Bolt CC, Gadolini ML, Duboule D, Rodriguez-Carballo E. Induction of a chromatin boundary in vivo upon insertion of a TAD border. Plos Genetics. 17: e1009691. PMID 34292939 DOI: 10.1371/journal.pgen.1009691   
2021 Dabral A, Shamoon A, Meena RK, Kant R, Pandey S, Ginwal HS, Bhandari MS. Genome skimming-based simple sequence repeat (SSR) marker discovery and characterization in . Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 1-16. PMID 34305342 DOI: 10.1007/s12298-021-01035-w   
2021 Dabral A, Shamoon A, Meena RK, Kant R, Pandey S, Ginwal HS, Bhandari MS. Genome skimming-based simple sequence repeat (SSR) marker discovery and characterization in . Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 1-16. PMID 34305342 DOI: 10.1007/s12298-021-01035-w   
2021 Wang T, Zhang Y, Guo Y, Zhang X, Yang H, Tian X, Zhu M, Guo Z, Zeng S, Luo K, He Q. RNA-sequence reveals differentially expressed genes affecting the crested trait of Wumeng crested chicken. Poultry Science. 100: 101357. PMID 34329989 DOI: 10.1016/j.psj.2021.101357   
2021 Li Q, Qiao X, Jia L, Zhang Y, Zhang S. Transcriptome and Resequencing Analyses Provide Insight into Differences in Organic Acid Accumulation in Two Pear Varieties. International Journal of Molecular Sciences. 22. PMID 34502530 DOI: 10.3390/ijms22179622   
2021 Carballar-Lejarazú R, Pham TB, Kelsey A, Tushar T, James AA. Digital-Droplet PCR to Detect Indels Mutations in Genetically Modified Anopheline Mosquito Populations. Journal of Visualized Experiments : Jove. PMID 34251367 DOI: 10.3791/62607   
2021 Lou RN, Jacobs A, Wilder A, Therkildsen NO. A beginner's guide to low-coverage whole genome sequencing for population genomics. Molecular Ecology. PMID 34250668 DOI: 10.1111/mec.16077   
2021 Lou RN, Jacobs A, Wilder A, Therkildsen NO. A beginner's guide to low-coverage whole genome sequencing for population genomics. Molecular Ecology. PMID 34250668 DOI: 10.1111/mec.16077   
2021 Georgakopoulos-Soares I, Yizhar-Barnea O, Mouratidis I, Hemberg M, Ahituv N. Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution. Genome Biology. 22: 245. PMID 34433494 DOI: 10.1186/s13059-021-02459-z   
2021 Chen J, Xue M, Liu H, Fernie AR, Chen W. Exploring the genic resources underlying metabolites through mGWAS and mQTL in wheat: From large-scale gene identification and pathway elucidation to crop improvement. Plant Communications. 2: 100216. PMID 34327326 DOI: 10.1016/j.xplc.2021.100216   
2021 Yue L, Pang R, Tian H, Guan Z, Zhong M, Zhao L, Liu K. Genome-Wide Analysis of the Amino Acid Auxin Permease (AAAP) Gene Family and Identification of an AAAP Gene Associated with the Growth and Reproduction of the Brown Planthopper, (Stål). Insects. 12. PMID 34442311 DOI: 10.3390/insects12080746   
2021 Tarekegn GM, Khayatzadeh N, Liu B, Osama S, Haile A, Rischkowsky B, Zhang W, Tesfaye K, Dessie T, Mwai OA, Djikeng A, Mwacharo JM. Ethiopian indigenous goats offer insights into past and recent demographic dynamics and local adaptation in sub-Saharan African goats. Evolutionary Applications. 14: 1716-1731. PMID 34295359 DOI: 10.1111/eva.13118   
2021 Islam MS, Hasan MS, Hasan MN, Prodhan SH, Islam T, Ghosh A. Genome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions. Scientific Reports. 11: 18284. PMID 34521910 DOI: 10.1038/s41598-021-97691-9   
2021 Zhang X, Liu T, Wang J, Wang P, Qiu Y, Zhao W, Pang S, Li X, Wang H, Song J, Zhang W, Yang W, Sun Y, Li X. Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild and weedy radishes. Molecular Plant. PMID 34384905 DOI: 10.1016/j.molp.2021.08.005   
2021 Shi L, Wang K, Du L, Song Y, Li H, Ye X. Genome-Wide Identification and Expression Profiling Analysis of WOX Family Protein-Encoded Genes in Triticeae Species. International Journal of Molecular Sciences. 22. PMID 34502234 DOI: 10.3390/ijms22179325   
2021 Turbek SP, Semenov GA, Enbody ED, Campagna L, Taylor SA. Variable signatures of selection despite conserved recombination landscapes early in speciation. The Journal of Heredity. PMID 34499149 DOI: 10.1093/jhered/esab054   
2021 Wang K, Hu H, Tian Y, Li J, Scheben A, Zhang C, Li Y, Wu J, Yang L, Fan X, Sun G, Li D, Zhang Y, Han R, Jiang R, et al. The chicken pan-genome reveals gene content variation and a promoter region deletion in IGF2BP1 affecting body size. Molecular Biology and Evolution. PMID 34329477 DOI: 10.1093/molbev/msab231   
2021 Li M, Cao Y, Debnath B, Yang H, Kui X, Qiu D. Cloning and Expression Analysis of Flavonoid 3', 5'-Hydroxylase Gene from . Genes. 12. PMID 34356102 DOI: 10.3390/genes12071086   
2021 Grankvist A, Jaén-Luchoro D, Wass L, Sikora P, Wennerås C. Comparative Genomics of Clinical Isolates of the Emerging Tick-Borne Pathogen . Microorganisms. 9. PMID 34361922 DOI: 10.3390/microorganisms9071488   
2021 Xu S, Li Z, Huang Y, Han L, Che Y, Hou X, Li D, Fan S, Li Z. Whole genome sequencing reveals the genomic diversity, taxonomic classification, and evolutionary relationships of the genus Nocardia. Plos Neglected Tropical Diseases. 15: e0009665. PMID 34437546 DOI: 10.1371/journal.pntd.0009665   
2021 Muto Y, Humphreys BD. Recent advances in lineage tracing for the kidney. Kidney International. PMID 34217781 DOI: 10.1016/j.kint.2021.05.040