Paul B. Rainey - Publications

Affiliations: 
Massey University, Palmerston North, Manawatu-Wanganui, New Zealand 

140 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Liu Y, Gokhale CS, Rainey PB, Zhang XX. Unravelling the complexity and redundancy of carbon catabolic repression in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25. Molecular Microbiology. PMID 28557013 DOI: 10.1111/mmi.13720  0.36
2017 Shewaramani S, Finn TJ, Leahy SC, Kassen R, Rainey PB, Moon CD. Anaerobically Grown Escherichia coli Has an Enhanced Mutation Rate and Distinct Mutational Spectra. Plos Genetics. 13: e1006570. PMID 28103245 DOI: 10.1371/journal.pgen.1006570  0.4
2016 Bailey SF, Dettman JR, Rainey PB, Kassen R. Correction to 'Competition both drives and impedes diversification in a model adaptive radiation'. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27122566 DOI: 10.1098/rspb.2016.0763  0.4
2016 Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, ... Rainey PB, et al. Challenges in microbial ecology: building predictive understanding of community function and dynamics. The Isme Journal. PMID 27022995 DOI: 10.1038/ismej.2016.45  1
2015 Ritchie SR, Isdale E, Priest P, Rainey PB, Thomas MG. The turnover of strains in intermittent and persistent nasal carriers of Staphylococcus aureus. Dynamics of S. aureus carriage. The Journal of Infection. PMID 26724770 DOI: 10.1016/j.jinf.2015.12.010  1
2015 Freschi L, Jeukens J, Kukavica-Ibrulj I, Boyle B, Dupont MJ, Laroche J, Larose S, Maaroufi H, Fothergill JL, Moore M, Winsor GL, Aaron SD, Barbeau J, Bell SC, Burns JL, ... ... Rainey PB, et al. Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. Frontiers in Microbiology. 6: 1036. PMID 26483767 DOI: 10.3389/fmicb.2015.01036  1
2015 Pichugin Y, Gokhale CS, Garcia J, Traulsen A, Rainey PB. Modes of migration and multilevel selection in evolutionary multiplayer games. Journal of Theoretical Biology. 387: 144-153. PMID 26456203 DOI: 10.1016/j.jtbi.2015.09.027  1
2015 Liu Y, Rainey PB, Zhang XX. Molecular mechanisms of xylose utilization by Pseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannitol. Molecular Microbiology. PMID 26194109 DOI: 10.1111/mmi.13142  1
2015 Zhang XX, Gauntlett JC, Oldenburg DG, Cook GM, Rainey PB. Role of the transporter-like sensor kinase CbrA in histidine uptake and signal transduction. Journal of Bacteriology. PMID 26148710 DOI: 10.1128/JB.00361-15  1
2015 Lind PA, Farr AD, Rainey PB. Experimental evolution reveals hidden diversity in evolutionary pathways. Elife. 4. PMID 25806684 DOI: 10.7554/eLife.07074  1
2015 Gallie J, Libby E, Bertels F, Remigi P, Jendresen CB, Ferguson GC, Desprat N, Buffing MF, Sauer U, Beaumont HJ, Martinussen J, Kilstrup M, Rainey PB. Bistability in a metabolic network underpins the de novo evolution of colony switching in Pseudomonas fluorescens. Plos Biology. 13: e1002109. PMID 25763575 DOI: 10.1371/journal.pbio.1002109  1
2015 Rainey PB. Precarious development: the uncertain social life of cellular slime molds. Proceedings of the National Academy of Sciences of the United States of America. 112: 2639-40. PMID 25713343 DOI: 10.1073/pnas.1500708112  1
2015 Rikkerink EHA, McCann HC, Rees-George J, Lu A, Gleave AP, Andersen MT, Rainey PB, Templeton MD. Transposition, insertion, deletion and recombination drive variability in the type 3 secretome of pseudomonas syringae pv. Actinidiae, the transition from global effector comparisons to kiwifruit resistance breeding strategies Acta Horticulturae. 1095: 65-74.  1
2014 Liu Y, Rainey PB, Zhang XX. Mini-Tn7 vectors for studying post-transcriptional gene expression in Pseudomonas. Journal of Microbiological Methods. 107: 182-5. PMID 25447885 DOI: 10.1016/j.mimet.2014.10.015  1
2014 Hammerschmidt K, Rose CJ, Kerr B, Rainey PB. Life cycles, fitness decoupling and the evolution of multicellularity. Nature. 515: 75-9. PMID 25373677 DOI: 10.1038/nature13884  1
2014 Rainey PB, Desprat N, Driscoll WW, Zhang XX. Microbes are not bound by sociobiology: response to Kümmerli and Ross-Gillespie (2013). Evolution; International Journal of Organic Evolution. 68: 3344-55. PMID 25141778 DOI: 10.1111/evo.12508  1
2014 Ritchie SR, Thomas MG, Rainey PB. The genetic structure of Staphylococcus aureus populations from the Southwest Pacific. Plos One. 9: e100300. PMID 25003509 DOI: 10.1371/journal.pone.0100300  1
2014 De Monte S, Rainey PB. Nascent multicellular life and the emergence of individuality. Journal of Biosciences. 39: 237-48. PMID 24736157 DOI: 10.1007/s12038-014-9420-5  1
2014 Whiteson KL, Bailey B, Bergkessel M, Conrad D, Delhaes L, Felts B, Harris JK, Hunter R, Lim YW, Maughan H, Quinn R, Salamon P, Sullivan J, Wagner BD, Rainey PB. The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography. American Journal of Respiratory and Critical Care Medicine. 189: 1309-15. PMID 24702670 DOI: 10.1164/rccm.201312-2129PP  1
2014 Alsohim AS, Taylor TB, Barrett GA, Gallie J, Zhang XX, Altamirano-Junqueira AE, Johnson LJ, Rainey PB, Jackson RW. The biosurfactant viscosin produced by Pseudomonas fluorescens SBW25 aids spreading motility and plant growth promotion. Environmental Microbiology. 16: 2267-81. PMID 24684210 DOI: 10.1111/1462-2920.12469  1
2014 Bertels F, Silander OK, Pachkov M, Rainey PB, van Nimwegen E. Automated reconstruction of whole-genome phylogenies from short-sequence reads. Molecular Biology and Evolution. 31: 1077-88. PMID 24600054 DOI: 10.1093/molbev/msu088  1
2014 Zhang XX, Ritchie SR, Rainey PB. Urocanate as a potential signaling molecule for bacterial recognition of eukaryotic hosts. Cellular and Molecular Life Sciences : Cmls. 71: 541-7. PMID 24305948 DOI: 10.1007/s00018-013-1527-6  1
2014 Rainey PB, De Monte S. Resolving conflicts during the evolutionary transition to multicellular life Annual Review of Ecology, Evolution, and Systematics. 45: 599-620. DOI: 10.1146/annurev-ecolsys-120213-091740  1
2014 Yildirim Y, Patel S, Millar CD, Rainey PB. Microsatellite development for a tetrodotoxin-containing sea slug (Pleurobranchaea maculata) Biochemical Systematics and Ecology. 55: 342-345. DOI: 10.1016/j.bse.2014.04.001  1
2013 Libby E, Rainey PB. Eco-evolutionary feedback and the tuning of proto-developmental life cycles. Plos One. 8: e82274. PMID 24367511 DOI: 10.1371/journal.pone.0082274  1
2013 Flohr RC, Blom CJ, Rainey PB, Beaumont HJ. Founder niche constrains evolutionary adaptive radiation. Proceedings of the National Academy of Sciences of the United States of America. 110: 20663-8. PMID 24306929 DOI: 10.1073/pnas.1310310110  1
2013 Zhang XX, Rainey PB. Exploring the sociobiology of pyoverdin-producing Pseudomonas. Evolution; International Journal of Organic Evolution. 67: 3161-74. PMID 24152000 DOI: 10.1111/evo.12183  1
2013 Ferguson GC, Bertels F, Rainey PB. Adaptive divergence in experimental populations of Pseudomonas fluorescens. V. Insight into the niche specialist fuzzy spreader compels revision of the model Pseudomonas radiation. Genetics. 195: 1319-35. PMID 24077305 DOI: 10.1534/genetics.113.154948  1
2013 McCann HC, Rikkerink EH, Bertels F, Fiers M, Lu A, Rees-George J, Andersen MT, Gleave AP, Haubold B, Wohlers MW, Guttman DS, Wang PW, Straub C, Vanneste JL, Vanneste J, ... Rainey PB, et al. Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease. Plos Pathogens. 9: e1003503. PMID 23935484 DOI: 10.1371/journal.ppat.1003503  1
2013 Bailey SF, Dettman JR, Rainey PB, Kassen R. Competition both drives and impedes diversification in a model adaptive radiation. Proceedings. Biological Sciences / the Royal Society. 280: 20131253. PMID 23843392 DOI: 10.1098/rspb.2013.1253  1
2013 Frean M, Rainey PB, Traulsen A. The effect of population structure on the rate of evolution. Proceedings. Biological Sciences / the Royal Society. 280: 20130211. PMID 23677339 DOI: 10.1098/rspb.2013.0211  1
2013 Conrad D, Haynes M, Salamon P, Rainey PB, Youle M, Rohwer F. Cystic fibrosis therapy: a community ecology perspective. American Journal of Respiratory Cell and Molecular Biology. 48: 150-6. PMID 23103995 DOI: 10.1165/rcmb.2012-0059PS  1
2012 Hendrickson H, Rainey PB. Evolution: How the unicorn got its horn. Nature. 489: 504-5. PMID 22992522 DOI: 10.1038/nature11487  1
2012 Kidd TJ, Ritchie SR, Ramsay KA, Grimwood K, Bell SC, Rainey PB. Pseudomonas aeruginosa exhibits frequent recombination, but only a limited association between genotype and ecological setting. Plos One. 7: e44199. PMID 22970178 DOI: 10.1371/journal.pone.0044199  1
2012 Redondo-Nieto M, Barret M, Morrisey JP, Germaine K, Martínez-Granero F, Barahona E, Navazo A, Sánchez-Contreras M, Moynihan JA, Giddens SR, Coppoolse ER, Muriel C, Stiekema WJ, Rainey PB, Dowling D, et al. Genome sequence of the biocontrol strain Pseudomonas fluorescens F113. Journal of Bacteriology. 194: 1273-4. PMID 22328765 DOI: 10.1128/JB.06601-11  1
2012 Zhang XX, Chang H, Tran SL, Gauntlett JC, Cook GM, Rainey PB. Variation in transport explains polymorphism of histidine and urocanate utilization in a natural Pseudomonas population. Environmental Microbiology. 14: 1941-51. PMID 22225938 DOI: 10.1111/j.1462-2920.2011.02692.x  1
2012 Gerth ML, Ferla MP, Rainey PB. The origin and ecological significance of multiple branches for histidine utilization in Pseudomonas aeruginosa PAO1. Environmental Microbiology. 14: 1929-40. PMID 22225844 DOI: 10.1111/j.1462-2920.2011.02691.x  1
2012 Willner D, Haynes MR, Furlan M, Hanson N, Kirby B, Lim YW, Rainey PB, Schmieder R, Youle M, Conrad D, Rohwer F. Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. American Journal of Respiratory Cell and Molecular Biology. 46: 127-31. PMID 21980056 DOI: 10.1165/rcmb.2011-0253OC  1
2012 Willner D, Haynes MR, Furlan M, Schmieder R, Lim YW, Rainey PB, Rohwer F, Conrad D. Spatial distribution of microbial communities in the cystic fibrosis lung. The Isme Journal. 6: 471-4. PMID 21796216 DOI: 10.1038/ismej.2011.104  1
2011 Rainey PB, Beaumont HJ, Ferguson GC, Gallie J, Kost C, Libby E, Zhang XX. The evolutionary emergence of stochastic phenotype switching in bacteria. Microbial Cell Factories. 10: S14. PMID 21995592 DOI: 10.1186/1475-2859-10-S1-S14  1
2011 Best N, Fraser JD, Rainey PB, Roberts SA, Thomas MG, Ritchie SR. Nasal carriage of Staphylococcus aureus in healthy Aucklanders. The New Zealand Medical Journal. 124: 31-9. PMID 21747421  1
2011 Ritchie SR, Fraser JD, Libby E, Morris AJ, Rainey PB, Thomas MG. Demographic variation in community-based MRSA skin and soft tissue infection in Auckland, New Zealand. The New Zealand Medical Journal. 124: 21-30. PMID 21747420  1
2011 Bertels F, Rainey PB. Within-genome evolution of REPINs: a new family of miniature mobile DNA in bacteria. Plos Genetics. 7: e1002132. PMID 21698139 DOI: 10.1371/journal.pgen.1002132  1
2011 Libby E, Rainey PB. Exclusion rules, bottlenecks and the evolution of stochastic phenotype switching. Proceedings. Biological Sciences / the Royal Society. 278: 3574-83. PMID 21490013 DOI: 10.1098/rspb.2011.0146  1
2011 Kidd TJ, Grimwood K, Ramsay KA, Rainey PB, Bell SC. Comparison of three molecular techniques for typing Pseudomonas aeruginosa isolates in sputum samples from patients with cystic fibrosis. Journal of Clinical Microbiology. 49: 263-8. PMID 21084517 DOI: 10.1128/JCM.01421-10  1
2011 McDonald MJ, Cooper TF, Beaumont HJ, Rainey PB. The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens. Biology Letters. 7: 98-100. PMID 20659918 DOI: 10.1098/rsbl.2010.0547  1
2010 Knight CG, Zhang XX, Gunn A, Brenner T, Jackson RW, Giddens SR, Prabhakar S, Zitzmann N, Rainey PB. Testing temperature-induced proteomic changes in the plant-associated bacterium Pseudomonas fluorescens SBW25. Environmental Microbiology Reports. 2: 396-402. PMID 23766112 DOI: 10.1111/j.1758-2229.2009.00102.x  1
2010 Zhang XX, Rainey PB. Bet hedging in the underworld. Genome Biology. 11: 137. PMID 21062509 DOI: 10.1186/gb-2010-11-10-137  1
2010 Rainey PB, Kerr B. Cheats as first propagules: a new hypothesis for the evolution of individuality during the transition from single cells to multicellularity. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 32: 872-80. PMID 20726010 DOI: 10.1002/bies.201000039  1
2010 Zhang XX, Liu YH, Rainey PB. CbrAB-dependent regulation of pcnB, a poly(A) polymerase gene involved in polyadenylation of RNA in Pseudomonas fluorescens. Environmental Microbiology. 12: 1674-83. PMID 20482591 DOI: 10.1111/j.1462-2920.2010.02228.x  1
2010 Refardt D, Rainey PB. Tuning a genetic switch: experimental evolution and natural variation of prophage induction. Evolution; International Journal of Organic Evolution. 64: 1086-97. PMID 19891623 DOI: 10.1111/j.1558-5646.2009.00882.x  1
2010 Rainey PB. The de novo evolution of cooperation: An unlikely event Social Behaviour: Genes, Ecology and Evolution. 357-359. DOI: 10.1017/CBO9780511781360.028  1
2009 Beaumont HJ, Gallie J, Kost C, Ferguson GC, Rainey PB. Experimental evolution of bet hedging. Nature. 462: 90-3. PMID 19890329 DOI: 10.1038/nature08504  1
2009 Rainey PB. Evolutionary biology: Arrhythmia of tempo and mode. Nature. 461: 1219-21. PMID 19865158 DOI: 10.1038/4611219a  1
2009 McDonald MJ, Gehrig SM, Meintjes PL, Zhang XX, Rainey PB. Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiation. Genetics. 183: 1041-53. PMID 19704015 DOI: 10.1534/genetics.109.107110  1
2009 Silby MW, Cerdeño-Tárraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, Zhang XX, Moon CD, Gehrig SM, Godfrey SA, Knight CG, Malone JG, Robinson Z, Spiers AJ, Harris S, ... ... Rainey PB, et al. Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biology. 10: R51. PMID 19432983 DOI: 10.1186/gb-2009-10-5-r51  1
2008 Zhang XX, Rainey PB. Regulation of copper homeostasis in Pseudomonas fluorescens SBW25. Environmental Microbiology. 10: 3284-94. PMID 18707611 DOI: 10.1111/j.1462-2920.2008.01720.x  1
2008 Zhang XX, Rainey PB. Dual involvement of CbrAB and NtrBC in the regulation of histidine utilization in Pseudomonas fluorescens SBW25. Genetics. 178: 185-95. PMID 18202367 DOI: 10.1534/genetics.107.081984  1
2008 Moon CD, Zhang XX, Matthijs S, Schäfer M, Budzikiewicz H, Rainey PB. Genomic, genetic and structural analysis of pyoverdine-mediated iron acquisition in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25. Bmc Microbiology. 8: 7. PMID 18194565 DOI: 10.1186/1471-2180-8-7  1
2007 Zhang XX, Scott K, Meffin R, Rainey PB. Genetic characterization of psp encoding the DING protein in Pseudomonas fluorescens SBW25. Bmc Microbiology. 7: 114. PMID 18088430 DOI: 10.1186/1471-2180-7-114  1
2007 Tett A, Spiers AJ, Crossman LC, Ager D, Ciric L, Dow JM, Fry JC, Harris D, Lilley A, Oliver A, Parkhill J, Quail MA, Rainey PB, Saunders NJ, Seeger K, et al. Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet. The Isme Journal. 1: 331-40. PMID 18043644 DOI: 10.1038/ismej.2007.47  1
2007 Giddens SR, Jackson RW, Moon CD, Jacobs MA, Zhang XX, Gehrig SM, Rainey PB. Mutational activation of niche-specific genes provides insight into regulatory networks and bacterial function in a complex environment. Proceedings of the National Academy of Sciences of the United States of America. 104: 18247-52. PMID 17989226 DOI: 10.1073/pnas.0706739104  1
2007 Zhang XX, Rainey PB. Genetic analysis of the histidine utilization (hut) genes in Pseudomonas fluorescens SBW25. Genetics. 176: 2165-76. PMID 17717196 DOI: 10.1534/genetics.107.075713  1
2007 Zhang XX, Rainey PB. Construction and validation of a neutrally-marked strain of Pseudomonas fluorescens SBW25. Journal of Microbiological Methods. 71: 78-81. PMID 17669526 DOI: 10.1016/j.mimet.2007.07.001  1
2007 Zhang XX, Rainey PB. The role of a P1-type ATPase from Pseudomonas fluorescens SBW25 in copper homeostasis and plant colonization. Molecular Plant-Microbe Interactions : Mpmi. 20: 581-8. PMID 17506335 DOI: 10.1094/MPMI-20-5-0581  1
2007 Rainey PB. Unity from conflict. Nature. 446: 616. PMID 17410161 DOI: 10.1038/446616a  1
2007 Malone JG, Williams R, Christen M, Jenal U, Spiers AJ, Rainey PB. The structure-function relationship of WspR, a Pseudomonas fluorescens response regulator with a GGDEF output domain. Microbiology (Reading, England). 153: 980-94. PMID 17379708 DOI: 10.1099/mic.0.2006/002824-0  1
2007 Fukami T, Beaumont HJ, Zhang XX, Rainey PB. Immigration history controls diversification in experimental adaptive radiation. Nature. 446: 436-9. PMID 17377582 DOI: 10.1038/nature05629  1
2007 Bantinaki E, Kassen R, Knight CG, Robinson Z, Spiers AJ, Rainey PB. Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity. Genetics. 176: 441-53. PMID 17339222 DOI: 10.1534/genetics.106.069906  1
2007 Hansen SK, Rainey PB, Haagensen JA, Molin S. Evolution of species interactions in a biofilm community. Nature. 445: 533-6. PMID 17268468 DOI: 10.1038/nature05514  1
2007 Buckling A, Brockhurst MA, Travisano M, Rainey PB. Experimental adaptation to high and low quality environments under different scales of temporal variation. Journal of Evolutionary Biology. 20: 296-300. PMID 17210022 DOI: 10.1111/j.1420-9101.2006.01195.x  1
2007 Rainey PB. Using molecules to connect organisms, populations and communities Proceedings of the Royal Society B: Biological Sciences. 274: 2221. DOI: 10.1098/rspb.2007.0794  1
2006 Brockhurst MA, Fenton A, Roulston B, Rainey PB. The impact of phages on interspecific competition in experimental populations of bacteria. Bmc Ecology. 6: 19. PMID 17166259 DOI: 10.1186/1472-6785-6-19  1
2006 Knight CG, Zitzmann N, Prabhakar S, Antrobus R, Dwek R, Hebestreit H, Rainey PB. Unraveling adaptive evolution: how a single point mutation affects the protein coregulation network. Nature Genetics. 38: 1015-22. PMID 16921374 DOI: 10.1038/ng1867  1
2006 Zhang XX, George A, Bailey MJ, Rainey PB. The histidine utilization (hut) genes of Pseudomonas fluorescens SBW25 are active on plant surfaces, but are not required for competitive colonization of sugar beet seedlings. Microbiology (Reading, England). 152: 1867-75. PMID 16735749 DOI: 10.1099/mic.0.28731-0  1
2006 Goymer P, Kahn SG, Malone JG, Gehrig SM, Spiers AJ, Rainey PB. Adaptive divergence in experimental populations of Pseudomonas fluorescens. II. Role of the GGDEF regulator WspR in evolution and development of the wrinkly spreader phenotype. Genetics. 173: 515-26. PMID 16624907 DOI: 10.1534/genetics.106.055863  1
2006 Brockhurst MA, Buckling A, Rainey PB. Spatial heterogeneity and the stability of host-parasite coexistence. Journal of Evolutionary Biology. 19: 374-9. PMID 16599913 DOI: 10.1111/j.1420-9101.2005.01026.x  1
2006 Beaumont HJE, Gehrig SM, Kassen R, Knight CG, Malone J, Spiers AJ, Rainey PB. The genetics of phenotypic innovation Prokaryotic Diversity: Mechanisms and Significance: Published For the Society For General Microbiology. 91-104. DOI: 10.1017/CBO9780511754913.006  1
2006 Beaumont HJE, Gehrig SM, Kassen R, Knight CG, Malone J, Spiers AJ, Rainey PB. The genetics of phenotypic innovation Prokaryotic Diversity: Mechanisms and Significance: Published For the Society For General Microbiology. 91-104. DOI: 10.1017/CBO9780511754913.006  1
2005 Jackson RW, Preston GM, Rainey PB. Genetic characterization of Pseudomonas fluorescens SBW25 rsp gene expression in the phytosphere and in vitro. Journal of Bacteriology. 187: 8477-88. PMID 16321952 DOI: 10.1128/JB.187.24.8477-8488.2005  1
2005 Spiers AJ, Rainey PB. The Pseudomonas fluorescens SBW25 wrinkly spreader biofilm requires attachment factor, cellulose fibre and LPS interactions to maintain strength and integrity. Microbiology (Reading, England). 151: 2829-39. PMID 16151196 DOI: 10.1099/mic.0.27984-0  1
2005 Cooper TF, Beaumont HJ, Rainey PB. Biofilm diversity as a test of the insurance hypothesis. Microbiology (Reading, England). 151: 2815-6; discussion 2. PMID 16151192 DOI: 10.1099/mic.0.28026-0  1
2005 Brockhurst MA, Buckling A, Rainey PB. The effect of a bacteriophage on diversification of the opportunistic bacterial pathogen, Pseudomonas aeruginosa. Proceedings. Biological Sciences / the Royal Society. 272: 1385-91. PMID 16006335 DOI: 10.1098/rspb.2005.3086  1
2005 Arcus VL, Rainey PB, Turner SJ. The PIN-domain toxin-antitoxin array in mycobacteria. Trends in Microbiology. 13: 360-5. PMID 15993073 DOI: 10.1016/j.tim.2005.06.008  1
2005 Rediers H, Rainey PB, Vanderleyden J, De Mot R. Unraveling the secret lives of bacteria: use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression. Microbiology and Molecular Biology Reviews : Mmbr. 69: 217-61. PMID 15944455 DOI: 10.1128/MMBR.69.2.217-261.2005  1
2004 Jessup CM, Kassen R, Forde SE, Kerr B, Buckling A, Rainey PB, Bohannan BJ. Big questions, small worlds: microbial model systems in ecology. Trends in Ecology & Evolution. 19: 189-97. PMID 16701253 DOI: 10.1016/j.tree.2004.01.008  1
2004 Zhang XX, Lilley AK, Bailey MJ, Rainey PB. The indigenous Pseudomonas plasmid pQBR103 encodes plant-inducible genes, including three putative helicases. Fems Microbiology Ecology. 51: 9-17. PMID 16329852 DOI: 10.1016/j.femsec.2004.07.006  1
2004 Kassen R, Llewellyn M, Rainey PB. Ecological constraints on diversification in a model adaptive radiation. Nature. 431: 984-8. PMID 15496923 DOI: 10.1038/nature02923  1
2004 Kassen R, Rainey PB. The ecology and genetics of microbial diversity. Annual Review of Microbiology. 58: 207-31. PMID 15487936 DOI: 10.1146/annurev.micro.58.030603.123654  1
2004 Zhang XX, Lilley AK, Bailey MJ, Rainey PB. Functional and phylogenetic analysis of a plant-inducible oligoribonuclease (orn) gene from an indigenous Pseudomonas plasmid. Microbiology (Reading, England). 150: 2889-98. PMID 15347748 DOI: 10.1099/mic.0.27250-0  1
2004 Rainey PB, Cooper TF. Evolution of bacterial diversity and the origins of modularity. Research in Microbiology. 155: 370-5. PMID 15207869 DOI: 10.1016/j.resmic.2004.01.011  1
2004 MacLean RC, Bell G, Rainey PB. The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens. Proceedings of the National Academy of Sciences of the United States of America. 101: 8072-7. PMID 15150419 DOI: 10.1073/pnas.0307195101  1
2004 Knight CG, Kassen R, Hebestreit H, Rainey PB. Global analysis of predicted proteomes: functional adaptation of physical properties. Proceedings of the National Academy of Sciences of the United States of America. 101: 8390-5. PMID 15150418 DOI: 10.1073/pnas.0307270101  1
2004 Brockhurst MA, Rainey PB, Buckling A. The effect of spatial heterogeneity and parasites on the evolution of host diversity. Proceedings. Biological Sciences / the Royal Society. 271: 107-11. PMID 15002778 DOI: 10.1098/rspb.2003.2556  1
2004 Silby MW, Rainey PB, Levy SB. IVET experiments in Pseudomonas fluorescens reveal cryptic promoters at loci associated with recognizable overlapping genes. Microbiology (Reading, England). 150: 518-20. PMID 14993298  1
2003 Gal M, Preston GM, Massey RC, Spiers AJ, Rainey PB. Genes encoding a cellulosic polymer contribute toward the ecological success of Pseudomonas fluorescens SBW25 on plant surfaces. Molecular Ecology. 12: 3109-21. PMID 14629390 DOI: 10.1046/j.1365-294X.2003.01953.x  1
2003 Rediers H, Bonnecarrère V, Rainey PB, Hamonts K, Vanderleyden J, De Mot R. Development and application of a dapB-based in vivo expression technology system to study colonization of rice by the endophytic nitrogen-fixing bacterium Pseudomonas stutzeri A15. Applied and Environmental Microbiology. 69: 6864-74. PMID 14602651 DOI: 10.1128/AEM.69.11.6864-6874.2003  1
2003 Spiers AJ, Bohannon J, Gehrig SM, Rainey PB. Biofilm formation at the air-liquid interface by the Pseudomonas fluorescens SBW25 wrinkly spreader requires an acetylated form of cellulose. Molecular Microbiology. 50: 15-27. PMID 14507360 DOI: 10.1046/j.1365-2958.2003.03670.x  1
2003 Rainey PB, Rainey K. Evolution of cooperation and conflict in experimental bacterial populations. Nature. 425: 72-4. PMID 12955142 DOI: 10.1038/nature01906  1
2003 Brockhurst MA, Morgan AD, Rainey PB, Buckling A. Population mixing accelerates coevolution Ecology Letters. 6: 975-979. DOI: 10.1046/j.1461-0248.2003.00531.x  1
2003 Rainey P, Lally. Mutation rate evolution and implications for Pseudomonas aeruginosa in cystic fibrosis International Congress and Symposium Series - Royal Society of Medicine. 23-28.  1
2002 Buckling A, Rainey PB. The role of parasites in sympatric and allopatric host diversification. Nature. 420: 496-9. PMID 12466840 DOI: 10.1038/nature01164  1
2002 Hodgson DJ, Rainey PB, Buckling A. Mechanisms linking diversity, productivity and invasibility in experimental bacterial communities. Proceedings. Biological Sciences / the Royal Society. 269: 2277-83. PMID 12427320 DOI: 10.1098/rspb.2002.2146  1
2002 D'Argenio DA, Calfee MW, Rainey PB, Pesci EC. Autolysis and autoaggregation in Pseudomonas aeruginosa colony morphology mutants. Journal of Bacteriology. 184: 6481-9. PMID 12426335 DOI: 10.1128/JB.184.23.6481-6489.2002  1
2002 Buckling A, Rainey PB. Antagonistic coevolution between a bacterium and a bacteriophage. Proceedings. Biological Sciences / the Royal Society. 269: 931-6. PMID 12028776 DOI: 10.1098/rspb.2001.1945  1
2002 Spiers AJ, Kahn SG, Bohannon J, Travisano M, Rainey PB. Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. Genetic and phenotypic bases of wrinkly spreader fitness. Genetics. 161: 33-46. PMID 12019221  1
2001 Preston GM, Bertrand N, Rainey PB. Type III secretion in plant growth-promoting Pseudomonas fluorescens SBW25. Molecular Microbiology. 41: 999-1014. PMID 11555282 DOI: 10.1046/j.1365-2958.2001.02560.x  1
2001 Spiers AJ, Field D, Bailey M, Rainey PB. Notes on designing a partial genomic database: The PfSBW25 Encyclopaedia, a sequence database for Pseudomonas fluorescens SBW25. Microbiology (Reading, England). 147: 247-9. PMID 11158339  1
2000 Travisano M, Rainey PB. Studies of Adaptive Radiation Using Model Microbial Systems. The American Naturalist. 156: S35-S44. PMID 29592580 DOI: 10.1086/303414  1
2000 Buckling A, Kassen R, Bell G, Rainey PB. Disturbance and diversity in experimental microcosms. Nature. 408: 961-4. PMID 11140680 DOI: 10.1038/35050080  1
2000 Rainey PB, Preston GM. In vivo expression technology strategies: valuable tools for biotechnology. Current Opinion in Biotechnology. 11: 440-4. PMID 11024360 DOI: 10.1016/S0958-1669(00)00132-4  1
2000 Spiers AJ, Buckling A, Rainey PB. The causes of Pseudomonas diversity. Microbiology (Reading, England). 146: 2345-50. PMID 11021911  1
2000 Kassen R, Buckling A, Bell G, Rainey PB. Diversity peaks at intermediate productivity in a laboratory microcosm. Nature. 406: 508-12. PMID 10952310 DOI: 10.1038/35020060  0.4
2000 Rainey PB, Moxon ER. When being hyper keeps you fit Science. 288: 1186-1187. PMID 10841739 DOI: 10.1126/science.288.5469.1186  1
2000 Rainey PB, Buckling A, Kassen R, Travisano M. The emergence and maintenance of diversity: insights from experimental bacterial populations. Trends in Ecology & Evolution. 15: 243-247. PMID 10802550 DOI: 10.1016/S0169-5347(00)01871-1  1
2000 Travisano M, Rainey PB. Studies of adaptive radiation using model microbial systems American Naturalist. 156: S35-S44.  1
1999 Rainey PB. Adaptation of Pseudomonas fluorescens to the plant rhizosphere. Environmental Microbiology. 1: 243-57. PMID 11207743  1
1999 Massey RC, Rainey PB, Sheehan BJ, Keane OM, Dorman CJ. Environmentally constrained mutation and adaptive evolution in Salmonella. Current Biology : Cb. 9: 1477-80. PMID 10607591 DOI: 10.1016/S0960-9822(00)80117-7  1
1999 Rainey PB. Evolutionary genetics: The economics of mutation. Current Biology : Cb. 9: R371-3. PMID 10339419 DOI: 10.1016/S0960-9822(99)80230-9  1
1998 Moxon ER, Lenski RE, Rainey PB. Adaptive evolution of highly mutable loci in pathogenic bacteria. Perspectives in Biology and Medicine. 42: 154-5. PMID 10766604  1
1998 Preston GM, Haubold B, Rainey PB. Bacterial genomics and adaptation to life on plants: implications for the evolution of pathogenicity and symbiosis. Current Opinion in Microbiology. 1: 589-97. PMID 10066526  1
1998 Haubold B, Travisano M, Rainey PB, Hudson RR. Detecting linkage disequilibrium in bacterial populations. Genetics. 150: 1341-8. PMID 9832514  1
1998 Rainey PB, Travisano M. Adaptive radiation in a heterogeneous environment. Nature. 394: 69-72. PMID 9665128 DOI: 10.1038/27900  1
1997 Rainey PB, Heithoff DM, Mahan MJ. Single-step conjugative cloning of bacterial gene fusions involved in microbe-host interactions. Molecular & General Genetics : Mgg. 256: 84-7. PMID 9341682 DOI: 10.1007/s004380050548  1
1997 Haubold B, Rainey PB. Towards an Understanding of the Population Genetics of Plant-Colonizing Bacteria Advances in Botanical Research. 24: 335-351. DOI: 10.1016/S0065-2296(08)60078-6  1
1996 Rainey PB, Bailey MJ. Physical and genetic map of the Pseudomonas fluorescens SBW25 chromosome. Molecular Microbiology. 19: 521-33. PMID 8830243  1
1996 Haubold B, Rainey PB. Genetic and ecotypic structure of a fluorescent Pseudomonas population Molecular Ecology. 5: 747-761.  1
1995 Bailey MJ, Lilley AK, Thompson IP, Rainey PB, Ellis RJ. Site directed chromosomal marking of a fluorescent pseudomonad isolated from the phytosphere of sugar beet; Stability and potential for marker gene transfer Molecular Ecology. 4: 755-763. PMID 8564013  1
1995 Livesley MA, Thompson IP, Rainey PB, Nuttall PA. Comparison of Borrelia isolated from UK foci of Lyme disease Fems Microbiology Letters. 130: 151-157. PMID 7649436 DOI: 10.1016/0378-1097(95)00197-D  1
1995 Thompson IP, Bailey MJ, Ellis RJ, Lilley AK, McCormack PJ, Purdy KJ, Rainey PB. Short-term community dynamics in the phyllosphere microbiology of field-grown sugar beet Fems Microbiology Ecology. 16: 205-211. DOI: 10.1016/0168-6496(94)00084-A  1
1994 Rainey PB, Thompson IP, Palleroni NJ. Genome and fatty acid analysis of Pseudomonas stutzeri International Journal of Systematic Bacteriology. 44: 54-61. PMID 8123562  1
1994 Rainey PB, Bailey MJ, Thompson IP. Phenotypic and genotypic diversity of fluorescent pseudomonads isolated from field-grown sugar beet Microbiology. 140: 2315-2331. PMID 7952185  1
1994 Moxon ER, Rainey PB, Nowak MA, Lenski RE. Adaptive evolution of highly mutable loci in pathogenic bacteria. Current Biology : Cb. 4: 24-33. PMID 7922307 DOI: 10.1016/S0960-9822(00)00005-1  1
1993 Rainey PB, Brodey CL, Johnstone K. Identification of a gene cluster encoding three high-molecular-weight proteins, which is required for synthesis of tolaasin by the mushroom pathogen Pseudomonas tolaasii. Molecular Microbiology. 8: 643-52. PMID 8332057  1
1993 Thompson IP, Bailey MJ, Fenlon JS, Fermor TR, Lilley AK, Lynch JM, McCormack PJ, McQuilken MP, Purdy KJ, Rainey PB, Whipps JM. Quantitative and qualitative seasonal changes in the microbial community from the phyllosphere of sugar beet (Beta vulgaris) Plant and Soil. 150: 177-191. DOI: 10.1007/BF00013015  1
1991 Rainey PB. Phenotypic variation of Pseudomonas putida and P. tolaasii affects attachment to Agaricus bisporus mycelium Journal of General Microbiology. 137: 2769-2779. PMID 1791432  1
1991 Grewal SIS, Rainey PB. Phenotypic variation of Pseudomonas putida and P. tolaasii affects the chemotactic response to Agaricus bisporus mycelial exudate Journal of General Microbiology. 137: 2761-2768. PMID 1791431  1
1991 Mortishire-Smith RJ, Nutkins JC, Packman LC, Brodey CL, Rainey PB, Johnstone K, Williams DH. Determination of the structure of an extracellular peptide produced by the mushroom saprotroph pseudomonas reactans Tetrahedron. 47: 3645-3654. DOI: 10.1016/S0040-4020(01)80877-2  1
1991 Rainey PB, Brodey CL, Johnstone K. Biological properties and spectrum of activity of tolaasin, a lipodepsipeptide toxin produced by the mushroom pathogen Pseudomonas tolaasii Physiological and Molecular Plant Pathology. 39: 57-70. DOI: 10.1016/0885-5765(91)90031-C  1
1991 Nutkins JC, Mortishire-Smith RJ, Packman LC, Brodey CL, Rainey PB, Johnstone K, Williams DH. Structure determination of tolaasin, an exracellular lipodepsipeptide produced by the mushroom pathogen pseudomonas tolaasii paine Journal of the American Chemical Society. 113: 2621-2627.  1
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