| Year |
Citation |
Score |
| 2023 |
Theodosiou L, Farr AD, Rainey PB. Barcoding Populations of Pseudomonas fluorescens SBW25. Journal of Molecular Evolution. PMID 37186220 DOI: 10.1007/s00239-023-10103-6 |
0.753 |
|
| 2023 |
Fortmann-Grote C, Hugoson E, Summers J, Theodosiou L, Rainey PB. Genome Update for Pseudomonas fluorescens Isolate SBW25. Microbiology Resource Announcements. e0063722. PMID 36651771 DOI: 10.1128/mra.00637-22 |
0.733 |
|
| 2020 |
Rose CJ, Hammerschmidt K, Pichugin Y, Rainey PB. Meta-population structure and the evolutionary transition to multicellularity. Ecology Letters. PMID 32643307 DOI: 10.1111/Ele.13570 |
0.312 |
|
| 2020 |
Doulcier G, Lambert A, De Monte S, Rainey PB. Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity. Elife. 9. PMID 32633717 DOI: 10.7554/Elife.53433 |
0.321 |
|
| 2020 |
Zhang XX, Ritchie SR, Chang H, Arnold DL, Jackson RW, Rainey PB. Genotypic and phenotypic analyses reveal distinct population structures and ecotypes for sugar beet-associated in Oxford and Auckland. Ecology and Evolution. 10: 5963-5975. PMID 32607204 DOI: 10.1002/Ece3.6334 |
0.396 |
|
| 2020 |
Quistad SD, Doulcier G, Rainey PB. Experimental manipulation of selfish genetic elements links genes to microbial community function. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190681. PMID 32200751 DOI: 10.1098/Rstb.2019.0681 |
0.316 |
|
| 2020 |
Rainey PB, Quistad SD. Toward a dynamical understanding of microbial communities. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190248. PMID 32200735 DOI: 10.1098/Rstb.2019.0248 |
0.309 |
|
| 2020 |
Black AJ, Bourrat P, Rainey PB. Ecological scaffolding and the evolution of individuality. Nature Ecology & Evolution. PMID 32042121 DOI: 10.1038/S41559-019-1086-9 |
0.335 |
|
| 2020 |
Doulcier G, Lambert A, Monte SD, Rainey PB. Author response: Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity Elife. DOI: 10.7554/Elife.53433.Sa2 |
0.308 |
|
| 2019 |
Remigi P, Ferguson GC, McConnell E, De Monte S, Rogers DW, Rainey PB. Ribosome Provisioning Activates a Bistable Switch Coupled to Fast Exit from Stationary Phase. Molecular Biology and Evolution. 36: 1056-1070. PMID 30835283 DOI: 10.1093/Molbev/Msz041 |
0.37 |
|
| 2019 |
Gallie J, Bertels F, Remigi P, Ferguson GC, Nestmann S, Rainey PB. Repeated phenotypic evolution by different genetic routes in Pseudomonas fluorescens SBW25. Molecular Biology and Evolution. PMID 30835268 DOI: 10.1093/Molbev/Msz040 |
0.304 |
|
| 2019 |
Lind PA, Libby E, Herzog J, Rainey PB. Predicting mutational routes to new adaptive phenotypes. Elife. 8. PMID 30616716 DOI: 10.7554/Elife.38822 |
0.684 |
|
| 2018 |
Yıldırım Y, Anderson MJ, Hansson B, Patel S, Millar CD, Rainey PB. Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand. Plos One. 13: e0202197. PMID 30114275 DOI: 10.1371/Journal.Pone.0202197 |
0.352 |
|
| 2018 |
Straub C, Colombi E, Li L, Huang H, Templeton MD, McCann HC, Rainey PB. The ecological genetics of Pseudomonas syringae from kiwifruit leaves. Environmental Microbiology. PMID 29521473 DOI: 10.1111/1462-2920.14092 |
0.367 |
|
| 2017 |
Farr AD, Remigi P, Rainey PB. Adaptive evolution by spontaneous domain fusion and protein relocalization. Nature Ecology & Evolution. 1: 1562-1568. PMID 29185504 DOI: 10.1038/S41559-017-0283-7 |
0.344 |
|
| 2017 |
Pichugin Y, Peña J, Rainey PB, Traulsen A. Fragmentation modes and the evolution of life cycles. Plos Computational Biology. 13: e1005860. PMID 29166656 DOI: 10.1371/Journal.Pcbi.1005860 |
0.305 |
|
| 2017 |
Rainey PB, Remigi P, Farr AD, Lind PA. Darwin was right: where now for experimental evolution? Current Opinion in Genetics & Development. 47: 102-109. PMID 29059583 DOI: 10.1016/J.Gde.2017.09.003 |
0.354 |
|
| 2017 |
Bertels F, Gallie J, Rainey PB. Identification and Characterization of Domesticated Bacterial Transposases. Genome Biology and Evolution. 9: 2110-2121. PMID 28910967 DOI: 10.1093/Gbe/Evx146 |
0.358 |
|
| 2017 |
Liu Y, Gokhale CS, Rainey PB, Zhang XX. Unravelling the complexity and redundancy of carbon catabolic repression in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25. Molecular Microbiology. PMID 28557013 DOI: 10.1111/Mmi.13720 |
0.336 |
|
| 2017 |
McCann HC, Li L, Liu Y, Li D, Pan H, Zhong C, Rikkerink EH, Templeton MD, Straub C, Colombi E, Rainey PB, Huang H. Origin and evolution of the kiwifruit canker pandemic. Genome Biology and Evolution. PMID 28369338 DOI: 10.1093/Gbe/Evx055 |
0.369 |
|
| 2017 |
Shewaramani S, Finn TJ, Leahy SC, Kassen R, Rainey PB, Moon CD. Anaerobically Grown Escherichia coli Has an Enhanced Mutation Rate and Distinct Mutational Spectra. Plos Genetics. 13: e1006570. PMID 28103245 DOI: 10.1371/Journal.Pgen.1006570 |
0.32 |
|
| 2016 |
Lind PA, Farr AD, Rainey PB. Evolutionary convergence in experimental Pseudomonas populations. The Isme Journal. PMID 27911438 DOI: 10.1038/Ismej.2016.157 |
0.401 |
|
| 2016 |
Cottinet D, Condamine F, Bremond N, Griffiths AD, Rainey PB, de Visser JA, Baudry J, Bibette J. Lineage Tracking for Probing Heritable Phenotypes at Single-Cell Resolution. Plos One. 11: e0152395. PMID 27077662 DOI: 10.1371/Journal.Pone.0152395 |
0.408 |
|
| 2016 |
Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, ... Rainey PB, et al. Challenges in microbial ecology: building predictive understanding of community function and dynamics. The Isme Journal. PMID 27022995 DOI: 10.1038/Ismej.2016.45 |
0.308 |
|
| 2015 |
Freschi L, Jeukens J, Kukavica-Ibrulj I, Boyle B, Dupont MJ, Laroche J, Larose S, Maaroufi H, Fothergill JL, Moore M, Winsor GL, Aaron SD, Barbeau J, Bell SC, Burns JL, ... ... Rainey PB, et al. Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. Frontiers in Microbiology. 6: 1036. PMID 26483767 DOI: 10.3389/Fmicb.2015.01036 |
0.352 |
|
| 2015 |
Liu Y, Rainey PB, Zhang XX. Molecular mechanisms of xylose utilization by Pseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannitol. Molecular Microbiology. PMID 26194109 DOI: 10.1111/Mmi.13142 |
0.308 |
|
| 2015 |
Lind PA, Farr AD, Rainey PB. Experimental evolution reveals hidden diversity in evolutionary pathways. Elife. 4. PMID 25806684 DOI: 10.7554/Elife.07074 |
0.385 |
|
| 2015 |
Gallie J, Libby E, Bertels F, Remigi P, Jendresen CB, Ferguson GC, Desprat N, Buffing MF, Sauer U, Beaumont HJ, Martinussen J, Kilstrup M, Rainey PB. Bistability in a metabolic network underpins the de novo evolution of colony switching in Pseudomonas fluorescens. Plos Biology. 13: e1002109. PMID 25763575 DOI: 10.1371/Journal.Pbio.1002109 |
0.698 |
|
| 2015 |
Lind PA, Farr AD, Rainey PB. Author response: Experimental evolution reveals hidden diversity in evolutionary pathways Elife. DOI: 10.7554/Elife.07074.019 |
0.314 |
|
| 2014 |
Hammerschmidt K, Rose CJ, Kerr B, Rainey PB. Life cycles, fitness decoupling and the evolution of multicellularity. Nature. 515: 75-9. PMID 25373677 DOI: 10.1038/Nature13884 |
0.305 |
|
| 2014 |
Rainey PB, Desprat N, Driscoll WW, Zhang XX. Microbes are not bound by sociobiology: response to Kümmerli and Ross-Gillespie (2013). Evolution; International Journal of Organic Evolution. 68: 3344-55. PMID 25141778 DOI: 10.1111/Evo.12508 |
0.721 |
|
| 2014 |
Ritchie SR, Thomas MG, Rainey PB. The genetic structure of Staphylococcus aureus populations from the Southwest Pacific. Plos One. 9: e100300. PMID 25003509 DOI: 10.1371/Journal.Pone.0100300 |
0.368 |
|
| 2014 |
De Monte S, Rainey PB. Nascent multicellular life and the emergence of individuality. Journal of Biosciences. 39: 237-48. PMID 24736157 DOI: 10.1007/S12038-014-9420-5 |
0.354 |
|
| 2014 |
Zhang XX, Ritchie SR, Rainey PB. Urocanate as a potential signaling molecule for bacterial recognition of eukaryotic hosts. Cellular and Molecular Life Sciences : Cmls. 71: 541-7. PMID 24305948 DOI: 10.1007/S00018-013-1527-6 |
0.324 |
|
| 2014 |
Rainey PB, De Monte S. Resolving conflicts during the evolutionary transition to multicellular life Annual Review of Ecology, Evolution, and Systematics. 45: 599-620. DOI: 10.1146/Annurev-Ecolsys-120213-091740 |
0.308 |
|
| 2013 |
Libby E, Rainey PB. Eco-evolutionary feedback and the tuning of proto-developmental life cycles. Plos One. 8: e82274. PMID 24367511 DOI: 10.1371/Journal.Pone.0082274 |
0.698 |
|
| 2013 |
Flohr RC, Blom CJ, Rainey PB, Beaumont HJ. Founder niche constrains evolutionary adaptive radiation. Proceedings of the National Academy of Sciences of the United States of America. 110: 20663-8. PMID 24306929 DOI: 10.1073/Pnas.1310310110 |
0.323 |
|
| 2013 |
Zhang XX, Rainey PB. Exploring the sociobiology of pyoverdin-producing Pseudomonas. Evolution; International Journal of Organic Evolution. 67: 3161-74. PMID 24152000 DOI: 10.1111/Evo.12183 |
0.336 |
|
| 2013 |
Ferguson GC, Bertels F, Rainey PB. Adaptive divergence in experimental populations of Pseudomonas fluorescens. V. Insight into the niche specialist fuzzy spreader compels revision of the model Pseudomonas radiation. Genetics. 195: 1319-35. PMID 24077305 DOI: 10.1534/Genetics.113.154948 |
0.37 |
|
| 2013 |
McCann HC, Rikkerink EH, Bertels F, Fiers M, Lu A, Rees-George J, Andersen MT, Gleave AP, Haubold B, Wohlers MW, Guttman DS, Wang PW, Straub C, Vanneste JL, Vanneste J, ... Rainey PB, et al. Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease. Plos Pathogens. 9: e1003503. PMID 23935484 DOI: 10.1371/Journal.Ppat.1003503 |
0.395 |
|
| 2013 |
Bailey SF, Dettman JR, Rainey PB, Kassen R. Competition both drives and impedes diversification in a model adaptive radiation. Proceedings. Biological Sciences / the Royal Society. 280: 20131253. PMID 23843392 DOI: 10.1098/Rspb.2013.1253 |
0.307 |
|
| 2013 |
Frean M, Rainey PB, Traulsen A. The effect of population structure on the rate of evolution. Proceedings. Biological Sciences / the Royal Society. 280: 20130211. PMID 23677339 DOI: 10.1098/Rspb.2013.0211 |
0.351 |
|
| 2013 |
Conrad D, Haynes M, Salamon P, Rainey PB, Youle M, Rohwer F. Cystic fibrosis therapy: a community ecology perspective. American Journal of Respiratory Cell and Molecular Biology. 48: 150-6. PMID 23103995 DOI: 10.1165/Rcmb.2012-0059Ps |
0.31 |
|
| 2012 |
Hendrickson H, Rainey PB. Evolution: How the unicorn got its horn. Nature. 489: 504-5. PMID 22992522 DOI: 10.1038/Nature11487 |
0.426 |
|
| 2012 |
Kidd TJ, Ritchie SR, Ramsay KA, Grimwood K, Bell SC, Rainey PB. Pseudomonas aeruginosa exhibits frequent recombination, but only a limited association between genotype and ecological setting. Plos One. 7: e44199. PMID 22970178 DOI: 10.1371/Journal.Pone.0044199 |
0.33 |
|
| 2012 |
Redondo-Nieto M, Barret M, Morrisey JP, Germaine K, Martínez-Granero F, Barahona E, Navazo A, Sánchez-Contreras M, Moynihan JA, Giddens SR, Coppoolse ER, Muriel C, Stiekema WJ, Rainey PB, Dowling D, et al. Genome sequence of the biocontrol strain Pseudomonas fluorescens F113. Journal of Bacteriology. 194: 1273-4. PMID 22328765 DOI: 10.1128/Jb.06601-11 |
0.323 |
|
| 2012 |
Zhang XX, Chang H, Tran SL, Gauntlett JC, Cook GM, Rainey PB. Variation in transport explains polymorphism of histidine and urocanate utilization in a natural Pseudomonas population. Environmental Microbiology. 14: 1941-51. PMID 22225938 DOI: 10.1111/J.1462-2920.2011.02692.X |
0.329 |
|
| 2012 |
Gerth ML, Ferla MP, Rainey PB. The origin and ecological significance of multiple branches for histidine utilization in Pseudomonas aeruginosa PAO1. Environmental Microbiology. 14: 1929-40. PMID 22225844 DOI: 10.1111/J.1462-2920.2011.02691.X |
0.347 |
|
| 2011 |
Bertels F, Rainey PB. Curiosities of REPINs and RAYTs. Mobile Genetic Elements. 1: 262-268. PMID 22545236 DOI: 10.4161/Mge.18610 |
0.366 |
|
| 2011 |
Rainey PB, Beaumont HJ, Ferguson GC, Gallie J, Kost C, Libby E, Zhang XX. The evolutionary emergence of stochastic phenotype switching in bacteria. Microbial Cell Factories. 10: S14. PMID 21995592 DOI: 10.1186/1475-2859-10-S1-S14 |
0.711 |
|
| 2011 |
Ritchie SR, Fraser JD, Libby E, Morris AJ, Rainey PB, Thomas MG. Demographic variation in community-based MRSA skin and soft tissue infection in Auckland, New Zealand. The New Zealand Medical Journal. 124: 21-30. PMID 21747420 |
0.638 |
|
| 2011 |
Bertels F, Rainey PB. Within-genome evolution of REPINs: a new family of miniature mobile DNA in bacteria. Plos Genetics. 7: e1002132. PMID 21698139 DOI: 10.1371/Journal.Pgen.1002132 |
0.361 |
|
| 2011 |
Libby E, Rainey PB. Exclusion rules, bottlenecks and the evolution of stochastic phenotype switching. Proceedings. Biological Sciences / the Royal Society. 278: 3574-83. PMID 21490013 DOI: 10.1098/Rspb.2011.0146 |
0.717 |
|
| 2011 |
McDonald MJ, Cooper TF, Beaumont HJ, Rainey PB. The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens. Biology Letters. 7: 98-100. PMID 20659918 DOI: 10.1098/Rsbl.2010.0547 |
0.365 |
|
| 2010 |
Knight CG, Zhang XX, Gunn A, Brenner T, Jackson RW, Giddens SR, Prabhakar S, Zitzmann N, Rainey PB. Testing temperature-induced proteomic changes in the plant-associated bacterium Pseudomonas fluorescens SBW25. Environmental Microbiology Reports. 2: 396-402. PMID 23766112 DOI: 10.1111/J.1758-2229.2009.00102.X |
0.541 |
|
| 2010 |
Rainey PB, Kerr B. Cheats as first propagules: a new hypothesis for the evolution of individuality during the transition from single cells to multicellularity. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 32: 872-80. PMID 20726010 DOI: 10.1002/Bies.201000039 |
0.307 |
|
| 2010 |
Refardt D, Rainey PB. Tuning a genetic switch: experimental evolution and natural variation of prophage induction. Evolution; International Journal of Organic Evolution. 64: 1086-97. PMID 19891623 DOI: 10.1111/J.1558-5646.2009.00882.X |
0.389 |
|
| 2010 |
Kidd T, Rainey P, Ramsay K, Grimwood K, Wainwright C, Bell S. Multilocus sequence typing (MLST) of Pseudomonas aeruginosa collected from different ecological niches Journal of Cystic Fibrosis. 9: S30. DOI: 10.1016/S1569-1993(10)60114-2 |
0.306 |
|
| 2009 |
Beaumont HJ, Gallie J, Kost C, Ferguson GC, Rainey PB. Experimental evolution of bet hedging. Nature. 462: 90-3. PMID 19890329 DOI: 10.1038/Nature08504 |
0.414 |
|
| 2009 |
McDonald MJ, Gehrig SM, Meintjes PL, Zhang XX, Rainey PB. Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiation. Genetics. 183: 1041-53. PMID 19704015 DOI: 10.1534/Genetics.109.107110 |
0.375 |
|
| 2009 |
Silby MW, Cerdeño-Tárraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, Zhang XX, Moon CD, Gehrig SM, Godfrey SA, Knight CG, Malone JG, Robinson Z, Spiers AJ, Harris S, ... ... Rainey PB, et al. Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biology. 10: R51. PMID 19432983 DOI: 10.1186/Gb-2009-10-5-R51 |
0.577 |
|
| 2008 |
Moon CD, Zhang XX, Matthijs S, Schäfer M, Budzikiewicz H, Rainey PB. Genomic, genetic and structural analysis of pyoverdine-mediated iron acquisition in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25. Bmc Microbiology. 8: 7. PMID 18194565 DOI: 10.1186/1471-2180-8-7 |
0.351 |
|
| 2007 |
Zhang XX, Scott K, Meffin R, Rainey PB. Genetic characterization of psp encoding the DING protein in Pseudomonas fluorescens SBW25. Bmc Microbiology. 7: 114. PMID 18088430 DOI: 10.1186/1471-2180-7-114 |
0.332 |
|
| 2007 |
Tett A, Spiers AJ, Crossman LC, Ager D, Ciric L, Dow JM, Fry JC, Harris D, Lilley A, Oliver A, Parkhill J, Quail MA, Rainey PB, Saunders NJ, Seeger K, et al. Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet. The Isme Journal. 1: 331-40. PMID 18043644 DOI: 10.1038/Ismej.2007.47 |
0.346 |
|
| 2007 |
Giddens SR, Jackson RW, Moon CD, Jacobs MA, Zhang XX, Gehrig SM, Rainey PB. Mutational activation of niche-specific genes provides insight into regulatory networks and bacterial function in a complex environment. Proceedings of the National Academy of Sciences of the United States of America. 104: 18247-52. PMID 17989226 DOI: 10.1073/Pnas.0706739104 |
0.358 |
|
| 2007 |
Zhang XX, Rainey PB. Genetic analysis of the histidine utilization (hut) genes in Pseudomonas fluorescens SBW25. Genetics. 176: 2165-76. PMID 17717196 DOI: 10.1534/Genetics.107.075713 |
0.336 |
|
| 2007 |
Fukami T, Beaumont HJ, Zhang XX, Rainey PB. Immigration history controls diversification in experimental adaptive radiation. Nature. 446: 436-9. PMID 17377582 DOI: 10.1038/Nature05629 |
0.362 |
|
| 2007 |
Bantinaki E, Kassen R, Knight CG, Robinson Z, Spiers AJ, Rainey PB. Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity. Genetics. 176: 441-53. PMID 17339222 DOI: 10.1534/Genetics.106.069906 |
0.588 |
|
| 2007 |
Hansen SK, Rainey PB, Haagensen JA, Molin S. Evolution of species interactions in a biofilm community. Nature. 445: 533-6. PMID 17268468 DOI: 10.1038/Nature05514 |
0.31 |
|
| 2007 |
Buckling A, Brockhurst MA, Travisano M, Rainey PB. Experimental adaptation to high and low quality environments under different scales of temporal variation. Journal of Evolutionary Biology. 20: 296-300. PMID 17210022 DOI: 10.1111/J.1420-9101.2006.01195.X |
0.609 |
|
| 2006 |
Brockhurst MA, Fenton A, Roulston B, Rainey PB. The impact of phages on interspecific competition in experimental populations of bacteria. Bmc Ecology. 6: 19. PMID 17166259 DOI: 10.1186/1472-6785-6-19 |
0.35 |
|
| 2006 |
Knight CG, Zitzmann N, Prabhakar S, Antrobus R, Dwek R, Hebestreit H, Rainey PB. Unraveling adaptive evolution: how a single point mutation affects the protein coregulation network. Nature Genetics. 38: 1015-22. PMID 16921374 DOI: 10.1038/Ng1867 |
0.546 |
|
| 2006 |
Zhang XX, George A, Bailey MJ, Rainey PB. The histidine utilization (hut) genes of Pseudomonas fluorescens SBW25 are active on plant surfaces, but are not required for competitive colonization of sugar beet seedlings. Microbiology (Reading, England). 152: 1867-75. PMID 16735749 DOI: 10.1099/Mic.0.28731-0 |
0.319 |
|
| 2006 |
Goymer P, Kahn SG, Malone JG, Gehrig SM, Spiers AJ, Rainey PB. Adaptive divergence in experimental populations of Pseudomonas fluorescens. II. Role of the GGDEF regulator WspR in evolution and development of the wrinkly spreader phenotype. Genetics. 173: 515-26. PMID 16624907 DOI: 10.1534/Genetics.106.055863 |
0.385 |
|
| 2006 |
Beaumont HJE, Gehrig SM, Kassen R, Knight CG, Malone J, Spiers AJ, Rainey PB. The genetics of phenotypic innovation Prokaryotic Diversity: Mechanisms and Significance: Published For the Society For General Microbiology. 91-104. DOI: 10.1017/CBO9780511754913.006 |
0.475 |
|
| 2006 |
Beaumont HJE, Gehrig SM, Kassen R, Knight CG, Malone J, Spiers AJ, Rainey PB. The genetics of phenotypic innovation Prokaryotic Diversity: Mechanisms and Significance: Published For the Society For General Microbiology. 91-104. DOI: 10.1017/CBO9780511754913.006 |
0.475 |
|
| 2005 |
Jackson RW, Preston GM, Rainey PB. Genetic characterization of Pseudomonas fluorescens SBW25 rsp gene expression in the phytosphere and in vitro. Journal of Bacteriology. 187: 8477-88. PMID 16321952 DOI: 10.1128/Jb.187.24.8477-8488.2005 |
0.313 |
|
| 2005 |
Brockhurst MA, Buckling A, Rainey PB. The effect of a bacteriophage on diversification of the opportunistic bacterial pathogen, Pseudomonas aeruginosa. Proceedings. Biological Sciences / the Royal Society. 272: 1385-91. PMID 16006335 DOI: 10.1098/Rspb.2005.3086 |
0.358 |
|
| 2005 |
Rediers H, Rainey PB, Vanderleyden J, De Mot R. Unraveling the secret lives of bacteria: use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression. Microbiology and Molecular Biology Reviews : Mmbr. 69: 217-61. PMID 15944455 DOI: 10.1128/Mmbr.69.2.217-261.2005 |
0.357 |
|
| 2004 |
Jessup CM, Kassen R, Forde SE, Kerr B, Buckling A, Rainey PB, Bohannan BJ. Big questions, small worlds: microbial model systems in ecology. Trends in Ecology & Evolution. 19: 189-97. PMID 16701253 DOI: 10.1016/J.Tree.2004.01.008 |
0.321 |
|
| 2004 |
Zhang XX, Lilley AK, Bailey MJ, Rainey PB. The indigenous Pseudomonas plasmid pQBR103 encodes plant-inducible genes, including three putative helicases. Fems Microbiology Ecology. 51: 9-17. PMID 16329852 DOI: 10.1016/J.Femsec.2004.07.006 |
0.333 |
|
| 2004 |
Kassen R, Llewellyn M, Rainey PB. Ecological constraints on diversification in a model adaptive radiation. Nature. 431: 984-8. PMID 15496923 DOI: 10.1038/Nature02923 |
0.337 |
|
| 2004 |
Kassen R, Rainey PB. The ecology and genetics of microbial diversity. Annual Review of Microbiology. 58: 207-31. PMID 15487936 DOI: 10.1146/Annurev.Micro.58.030603.123654 |
0.388 |
|
| 2004 |
Zhang XX, Lilley AK, Bailey MJ, Rainey PB. Functional and phylogenetic analysis of a plant-inducible oligoribonuclease (orn) gene from an indigenous Pseudomonas plasmid. Microbiology (Reading, England). 150: 2889-98. PMID 15347748 DOI: 10.1099/Mic.0.27250-0 |
0.332 |
|
| 2004 |
Rainey PB, Cooper TF. Evolution of bacterial diversity and the origins of modularity. Research in Microbiology. 155: 370-5. PMID 15207869 DOI: 10.1016/J.Resmic.2004.01.011 |
0.374 |
|
| 2004 |
Knight CG, Kassen R, Hebestreit H, Rainey PB. Global analysis of predicted proteomes: functional adaptation of physical properties. Proceedings of the National Academy of Sciences of the United States of America. 101: 8390-5. PMID 15150418 DOI: 10.1073/Pnas.0307270101 |
0.537 |
|
| 2004 |
Brockhurst MA, Rainey PB, Buckling A. The effect of spatial heterogeneity and parasites on the evolution of host diversity. Proceedings. Biological Sciences / the Royal Society. 271: 107-11. PMID 15002778 DOI: 10.1098/Rspb.2003.2556 |
0.38 |
|
| 2003 |
Gal M, Preston GM, Massey RC, Spiers AJ, Rainey PB. Genes encoding a cellulosic polymer contribute toward the ecological success of Pseudomonas fluorescens SBW25 on plant surfaces. Molecular Ecology. 12: 3109-21. PMID 14629390 DOI: 10.1046/J.1365-294X.2003.01953.X |
0.349 |
|
| 2003 |
Spiers AJ, Bohannon J, Gehrig SM, Rainey PB. Biofilm formation at the air-liquid interface by the Pseudomonas fluorescens SBW25 wrinkly spreader requires an acetylated form of cellulose. Molecular Microbiology. 50: 15-27. PMID 14507360 DOI: 10.1046/J.1365-2958.2003.03670.X |
0.301 |
|
| 2003 |
Rainey PB, Rainey K. Evolution of cooperation and conflict in experimental bacterial populations. Nature. 425: 72-4. PMID 12955142 DOI: 10.1038/Nature01906 |
0.35 |
|
| 2003 |
Brockhurst MA, Morgan AD, Rainey PB, Buckling A. Population mixing accelerates coevolution Ecology Letters. 6: 975-979. DOI: 10.1046/J.1461-0248.2003.00531.X |
0.332 |
|
| 2002 |
Buckling A, Rainey PB. The role of parasites in sympatric and allopatric host diversification. Nature. 420: 496-9. PMID 12466840 DOI: 10.1038/Nature01164 |
0.376 |
|
| 2002 |
D'Argenio DA, Calfee MW, Rainey PB, Pesci EC. Autolysis and autoaggregation in Pseudomonas aeruginosa colony morphology mutants. Journal of Bacteriology. 184: 6481-9. PMID 12426335 DOI: 10.1128/Jb.184.23.6481-6489.2002 |
0.354 |
|
| 2002 |
Buckling A, Rainey PB. Antagonistic coevolution between a bacterium and a bacteriophage. Proceedings. Biological Sciences / the Royal Society. 269: 931-6. PMID 12028776 DOI: 10.1098/Rspb.2001.1945 |
0.326 |
|
| 2002 |
Spiers AJ, Kahn SG, Bohannon J, Travisano M, Rainey PB. Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. Genetic and phenotypic bases of wrinkly spreader fitness. Genetics. 161: 33-46. PMID 12019221 |
0.636 |
|
| 2001 |
Preston GM, Bertrand N, Rainey PB. Type III secretion in plant growth-promoting Pseudomonas fluorescens SBW25. Molecular Microbiology. 41: 999-1014. PMID 11555282 DOI: 10.1046/J.1365-2958.2001.02560.X |
0.306 |
|
| 2000 |
Travisano M, Rainey PB. Studies of Adaptive Radiation Using Model Microbial Systems. The American Naturalist. 156: S35-S44. PMID 29592580 DOI: 10.1086/303414 |
0.618 |
|
| 2000 |
Buckling A, Kassen R, Bell G, Rainey PB. Disturbance and diversity in experimental microcosms. Nature. 408: 961-4. PMID 11140680 DOI: 10.1038/35050080 |
0.328 |
|
| 2000 |
Rainey PB, Preston GM. In vivo expression technology strategies: valuable tools for biotechnology. Current Opinion in Biotechnology. 11: 440-4. PMID 11024360 DOI: 10.1016/S0958-1669(00)00132-4 |
0.357 |
|
| 2000 |
Spiers AJ, Buckling A, Rainey PB. The causes of Pseudomonas diversity. Microbiology (Reading, England). 146: 2345-50. PMID 11021911 DOI: 10.1099/00221287-146-10-2345 |
0.322 |
|
| 2000 |
Kassen R, Buckling A, Bell G, Rainey PB. Diversity peaks at intermediate productivity in a laboratory microcosm. Nature. 406: 508-12. PMID 10952310 DOI: 10.1038/35020060 |
0.313 |
|
| 2000 |
Rainey PB, Moxon ER. When being hyper keeps you fit Science. 288: 1186-1187. PMID 10841739 DOI: 10.1126/Science.288.5469.1186 |
0.336 |
|
| 2000 |
Rainey PB, Buckling A, Kassen R, Travisano M. The emergence and maintenance of diversity: insights from experimental bacterial populations. Trends in Ecology & Evolution. 15: 243-247. PMID 10802550 DOI: 10.1016/S0169-5347(00)01871-1 |
0.66 |
|
| 2000 |
Travisano M, Rainey PB. Studies of adaptive radiation using model microbial systems American Naturalist. 156: S35-S44. |
0.546 |
|
| 1999 |
Rainey PB. Adaptation of Pseudomonas fluorescens to the plant rhizosphere. Environmental Microbiology. 1: 243-57. PMID 11207743 DOI: 10.1046/J.1462-2920.1999.00040.X |
0.332 |
|
| 1999 |
Massey RC, Rainey PB, Sheehan BJ, Keane OM, Dorman CJ. Environmentally constrained mutation and adaptive evolution in Salmonella. Current Biology : Cb. 9: 1477-80. PMID 10607591 DOI: 10.1016/S0960-9822(00)80117-7 |
0.33 |
|
| 1999 |
Rainey PB. Evolutionary genetics: The economics of mutation. Current Biology : Cb. 9: R371-3. PMID 10339419 DOI: 10.1016/S0960-9822(99)80230-9 |
0.351 |
|
| 1998 |
Moxon ER, Lenski RE, Rainey PB. Adaptive evolution of highly mutable loci in pathogenic bacteria. Perspectives in Biology and Medicine. 42: 154-5. PMID 10766604 |
0.521 |
|
| 1998 |
Preston GM, Haubold B, Rainey PB. Bacterial genomics and adaptation to life on plants: implications for the evolution of pathogenicity and symbiosis. Current Opinion in Microbiology. 1: 589-97. PMID 10066526 DOI: 10.1016/S1369-5274(98)80094-5 |
0.364 |
|
| 1998 |
Haubold B, Travisano M, Rainey PB, Hudson RR. Detecting linkage disequilibrium in bacterial populations. Genetics. 150: 1341-8. PMID 9832514 |
0.57 |
|
| 1998 |
Rainey PB, Travisano M. Adaptive radiation in a heterogeneous environment. Nature. 394: 69-72. PMID 9665128 DOI: 10.1038/27900 |
0.656 |
|
| 1997 |
Rainey PB, Heithoff DM, Mahan MJ. Single-step conjugative cloning of bacterial gene fusions involved in microbe-host interactions. Molecular & General Genetics : Mgg. 256: 84-7. PMID 9341682 DOI: 10.1007/S004380050548 |
0.313 |
|
| 1997 |
Haubold B, Rainey PB. Towards an Understanding of the Population Genetics of Plant-Colonizing Bacteria Advances in Botanical Research. 24: 335-351. DOI: 10.1016/S0065-2296(08)60078-6 |
0.398 |
|
| 1996 |
Haubold B, Rainey PB. Genetic and ecotypic structure of a fluorescent Pseudomonas population Molecular Ecology. 5: 747-761. DOI: 10.1111/J.1365-294X.1996.Tb00371.X |
0.341 |
|
| 1994 |
Rainey PB, Thompson IP, Palleroni NJ. Genome and fatty acid analysis of Pseudomonas stutzeri International Journal of Systematic Bacteriology. 44: 54-61. PMID 8123562 DOI: 10.1099/00207713-44-1-54 |
0.302 |
|
| 1994 |
Rainey PB, Bailey MJ, Thompson IP. Phenotypic and genotypic diversity of fluorescent pseudomonads isolated from field-grown sugar beet Microbiology. 140: 2315-2331. PMID 7952185 DOI: 10.1099/13500872-140-9-2315 |
0.363 |
|
| 1994 |
Moxon ER, Rainey PB, Nowak MA, Lenski RE. Adaptive evolution of highly mutable loci in pathogenic bacteria. Current Biology : Cb. 4: 24-33. PMID 7922307 DOI: 10.1016/S0960-9822(00)00005-1 |
0.59 |
|
| 1993 |
Rainey PB, Brodey CL, Johnstone K. Identification of a gene cluster encoding three high-molecular-weight proteins, which is required for synthesis of tolaasin by the mushroom pathogen Pseudomonas tolaasii. Molecular Microbiology. 8: 643-52. PMID 8332057 DOI: 10.1111/J.1365-2958.1993.Tb01608.X |
0.318 |
|
| 1993 |
Thompson IP, Bailey MJ, Fenlon JS, Fermor TR, Lilley AK, Lynch JM, McCormack PJ, McQuilken MP, Purdy KJ, Rainey PB, Whipps JM. Quantitative and qualitative seasonal changes in the microbial community from the phyllosphere of sugar beet (Beta vulgaris) Plant and Soil. 150: 177-191. DOI: 10.1007/Bf00013015 |
0.313 |
|
| 1993 |
Rainey PB, Thompson IP, Moxon ER. Intraclonal Polymorphism in Bacteria Advances in Microbial Ecology. 13: 263-300. DOI: 10.1007/978-1-4615-2858-6_6 |
0.388 |
|
| 1991 |
Rainey PB. Phenotypic variation of Pseudomonas putida and P. tolaasii affects attachment to Agaricus bisporus mycelium Journal of General Microbiology. 137: 2769-2779. PMID 1791432 DOI: 10.1099/00221287-137-12-2769 |
0.305 |
|
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