Nathan Lewis Clark, Ph.D. - Publications

Affiliations: 
Cornell University, Ithaca, NY, United States 
Area:
adaptive evolution, co-evolutionary networks
Website:
http://mbg.cornell.edu/cals/mbg/research/aquadro-lab/currentmembers.cfm#Clark

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Ziegler AB, Augustin H, Clark NL, Berthelot-Grosjean M, Simonnet MM, Steinert JR, Geillon F, Manière G, Featherstone DE, Grosjean Y. The Amino Acid Transporter JhI-21 Coevolves with Glutamate Receptors, Impacts NMJ Physiology, and Influences Locomotor Activity in Drosophila Larvae. Scientific Reports. 6: 19692. PMID 26805723 DOI: 10.1038/Srep19692  0.96
2016 Böhm S, Szakal B, Herken BW, Sullivan MR, Mihalevic MJ, Kabbinavar FF, Branzei D, Clark NL, Bernstein KA. The Budding Yeast Ubiquitin Protease Ubp7 is a Novel Component Involved in S-phase Progression. The Journal of Biological Chemistry. PMID 26740628 DOI: 10.1074/Jbc.M115.671057  0.96
2015 Wolfe NW, Clark NL. ERC analysis: web-based inference of gene function via evolutionary rate covariation. Bioinformatics (Oxford, England). PMID 26243019 DOI: 10.1093/Bioinformatics/Btv454  0.96
2015 Hancks DC, Hartley MK, Hagan C, Clark NL, Elde NC. Overlapping Patterns of Rapid Evolution in the Nucleic Acid Sensors cGAS and OAS1 Suggest a Common Mechanism of Pathogen Antagonism and Escape. Plos Genetics. 11: e1005203. PMID 25942676 DOI: 10.1371/Journal.Pgen.1005203  0.96
2015 Meslin C, Plakke MS, Deutsch AB, Small BS, Morehouse NI, Clark NL. Digestive organ in the female reproductive tract borrows genes from multiple organ systems to adopt critical functions. Molecular Biology and Evolution. 32: 1567-80. PMID 25725432 DOI: 10.1093/Molbev/Msv048  0.96
2015 Priedigkeit N, Wolfe N, Clark NL. Evolutionary signatures amongst disease genes permit novel methods for gene prioritization and construction of informative gene-based networks. Plos Genetics. 11: e1004967. PMID 25679399 DOI: 10.1371/Journal.Pgen.1004967  0.96
2015 Godin SK, Meslin C, Kabbinavar F, Bratton-Palmer DS, Hornack C, Mihalevic MJ, Yoshida K, Sullivan M, Clark NL, Bernstein KA. Evolutionary and functional analysis of the invariant SWIM domain in the conserved Shu2/SWS1 protein family from Saccharomyces cerevisiae to Homo sapiens. Genetics. 199: 1023-33. PMID 25659377 DOI: 10.1534/Genetics.114.173518  0.96
2014 Findlay GD, Sitnik JL, Wang W, Aquadro CF, Clark NL, Wolfner MF. Evolutionary rate covariation identifies new members of a protein network required for Drosophila melanogaster female post-mating responses. Plos Genetics. 10: e1004108. PMID 24453993 DOI: 10.1371/Journal.Pgen.1004108  0.96
2013 Clark NL, Alani E, Aquadro CF. Evolutionary rate covariation in meiotic proteins results from fluctuating evolutionary pressure in yeasts and mammals. Genetics. 193: 529-38. PMID 23183665 DOI: 10.1534/Genetics.112.145979  0.96
2012 Clark NL, Alani E, Aquadro CF. Evolutionary rate covariation reveals shared functionality and coexpression of genes. Genome Research. 22: 714-20. PMID 22287101 DOI: 10.1101/Gr.132647.111  0.96
2011 Kelleher ES, Clark NL, Markow TA. Diversity-enhancing selection acts on a female reproductive protease family in four subspecies of Drosophila mojavensis. Genetics. 187: 865-76. PMID 21212232 DOI: 10.1534/Genetics.110.124743  0.96
2010 Clark NL, Aquadro CF. A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins. Molecular Biology and Evolution. 27: 1152-61. PMID 20044587 DOI: 10.1093/molbev/msp324  0.96
2009 Clark NL, Gasper J, Sekino M, Springer SA, Aquadro CF, Swanson WJ. Coevolution of interacting fertilization proteins. Plos Genetics. 5: e1000570. PMID 19629160 DOI: 10.1371/Journal.Pgen.1000570  0.96
2009 Dean MD, Clark NL, Findlay GD, Karn RC, Yi X, Swanson WJ, MacCoss MJ, Nachman MW. Proteomics and comparative genomic investigations reveal heterogeneity in evolutionary rate of male reproductive proteins in mice (Mus domesticus). Molecular Biology and Evolution. 26: 1733-43. PMID 19420050 DOI: 10.1093/Molbev/Msp094  0.96
2008 Karn RC, Clark NL, Nguyen ED, Swanson WJ. Adaptive evolution in rodent seminal vesicle secretion proteins. Molecular Biology and Evolution. 25: 2301-10. PMID 18718917 DOI: 10.1093/molbev/msn182  0.96
2007 Clark NL, Findlay GD, Yi X, MacCoss MJ, Swanson WJ. Duplication and selection on abalone sperm lysin in an allopatric population. Molecular Biology and Evolution. 24: 2081-90. PMID 17630281 DOI: 10.1093/Molbev/Msm137  0.96
2006 Panhuis TM, Clark NL, Swanson WJ. Rapid evolution of reproductive proteins in abalone and Drosophila. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 261-8. PMID 16612885 DOI: 10.1098/rstb.2005.1793  0.96
2006 Clark NL, Aagaard JE, Swanson WJ. Evolution of reproductive proteins from animals and plants. Reproduction (Cambridge, England). 131: 11-22. PMID 16388004 DOI: 10.1530/Rep.1.00357  0.96
2005 Clark NL, Swanson WJ. Pervasive adaptive evolution in primate seminal proteins. Plos Genetics. 1: e35. PMID 16170411 DOI: 10.1371/journal.pgen.0010035  0.96
2005 Stewart MK, Clark NL, Merrihew G, Galloway EM, Thomas JH. High genetic diversity in the chemoreceptor superfamily of Caenorhabditis elegans. Genetics. 169: 1985-96. PMID 15520260 DOI: 10.1534/Genetics.104.035329  0.96
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