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Mark A. Batzer, Ph.D. - Publications

Biology Louisiana State University, Baton Rouge, LA, United States 
Transposable elements, evolution, genomics

232 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Warren WC, Harris RA, Haukness M, Fiddes IT, Murali SC, Fernandes J, Dishuck PC, Storer JM, Raveendran M, Hillier LW, Porubsky D, Mao Y, Gordon D, Vollger MR, Lewis AP, ... ... Batzer MA, et al. Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. Science (New York, N.Y.). 370. PMID 33335035 DOI: 10.1126/science.abc6617  0.8
2019 Storer JM, Walker JA, Jordan VE, Batzer MA. Sensitivity of the polyDetect computational pipeline for phylogenetic analyses. Analytical Biochemistry. 113516. PMID 31794702 DOI: 10.1016/j.ab.2019.113516  0.88
2019 Walker JA, Jordan VE, Storer JM, Steely CJ, Gonzalez-Quiroga P, Beckstrom TO, Rewerts LC, St Romain CP, Rockwell CE, Rogers J, Jolly CJ, Konkel MK, Batzer MA. insertion polymorphisms shared by baboons and reveal an intertwined common ancestry. Mobile Dna. 10: 46. PMID 31788036 DOI: 10.1186/s13100-019-0187-y  0.88
2019 Storer JM, Mierl JR, Brantley SA, Threeton B, Sukharutski Y, Rewerts LC, St Romain CP, Foreman MM, Baker JN, Walker JA, Orkin JD, Melin AD, Phillips KA, Konkel MK, Batzer MA. Amplification Dynamics of Platy-1 retrotransposons in the Cebidae Platyrrhine lineage. Genome Biology and Evolution. PMID 30888417 DOI: 10.1093/gbe/evz062  0.8
2019 Rogers J, Raveendran M, Harris RA, Mailund T, Leppälä K, Athanasiadis G, Schierup MH, Cheng J, Munch K, Walker JA, Konkel MK, Jordan V, Steely CJ, Beckstrom TO, Bergey C, ... ... Batzer MA, et al. The comparative genomics and complex population history of baboons. Science Advances. 5: eaau6947. PMID 30854422 DOI: 10.1126/sciadv.aau6947  0.8
2018 Jordan VE, Walker JA, Beckstrom TO, Steely CJ, McDaniel CL, St Romain CP, Worley KC, Phillips-Conroy J, Jolly CJ, Rogers J, Konkel MK, Batzer MA. A computational reconstruction of phylogeny using insertion polymorphisms. Mobile Dna. 9: 13. PMID 29632618 DOI: 10.1186/s13100-018-0118-3  0.88
2018 Steely CJ, Baker JN, Walker JA, Loupe CD, Batzer MA. Analysis of lineage-specificsubfamilies in the genome of the olive baboon,. Mobile Dna. 9: 10. PMID 29560044 DOI: 10.1186/s13100-018-0115-6  0.8
2018 Baker JN, Walker JA, Denham MW, Loupe CD, Batzer MA. Recently integratedinsertions in the squirrel monkey () lineage and application for population analyses. Mobile Dna. 9: 9. PMID 29449901 DOI: 10.1186/s13100-018-0114-7  0.8
2017 Steely CJ, Walker JA, Jordan VE, Beckstrom TO, McDaniel CL, St Romain CP, Bennett EC, Robichaux A, Clement BN, Raveendran M, Worley KC, Phillips-Conroy J, Jolly CJ, Rogers J, ... ... Batzer MA, et al. Alu Insertion Polymorphisms as Evidence for Population Structure in Baboons. Genome Biology and Evolution. 9: 2418-2427. PMID 28957465 DOI: 10.1093/gbe/evx184  0.88
2017 Baker JN, Walker JA, Vanchiere JA, Phillippe KR, St Romain CP, Gonzalez-Quiroga P, Denham MW, Mierl JR, Konkel MK, Batzer MA. Evolution of Alu Subfamily Structure in the Saimiri Lineage of New World Monkeys. Genome Biology and Evolution. 9: 2365-2376. PMID 28957461 DOI: 10.1093/gbe/evx172  0.8
2017 Walker JA, Jordan VE, Steely CJ, Beckstrom TO, McDaniel CL, St Romain CP, Bennett EC, Robichaux A, Clement BN, Konkel MK, Batzer MA. Papio Baboon Species Indicative Alu Elements. Genome Biology and Evolution. 9: 1788-1796. PMID 28854642 DOI: 10.1093/gbe/evx130  0.88
2016 Konkel MK, Ullmer B, Arceneaux EL, Sanampudi S, Brantley SA, Hubley R, Smit AF, Batzer MA. Discovery of a new repeat family in the Callithrix jacchus genome. Genome Research. PMID 26916108 DOI: 10.1101/gr.199075.115  0.44
2016 Bakshi A, Herke SW, Batzer MA, Kim J. DNA methylation variation of human-specific Alu repeats. Epigenetics. 0. PMID 26890526 DOI: 10.1080/15592294.2015.1130518  1
2015 Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, Zhang Y, Ye K, Jun G, Hsi-Yang Fritz M, Konkel MK, Malhotra A, Stütz AM, Shi X, Paolo Casale F, ... ... Batzer MA, et al. An integrated map of structural variation in 2,504 human genomes. Nature. 526: 75-81. PMID 26432246 DOI: 10.1038/nature15394  1
2015 Konkel MK, Walker JA, Hotard AB, Ranck MC, Fontenot CC, Storer J, Stewart C, Marth GT, Batzer MA. Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project. Genome Biology and Evolution. 7: 2608-22. PMID 26319576 DOI: 10.1093/gbe/evv167  1
2015 Streva VA, Jordan VE, Linker S, Hedges DJ, Batzer MA, Deininger PL. Sequencing, identification and mapping of primed L1 elements (SIMPLE) reveals significant variation in full length L1 elements between individuals. Bmc Genomics. 16: 220. PMID 25887476 DOI: 10.1186/s12864-015-1374-y  1
2014 Wu J, Lee WP, Ward A, Walker JA, Konkel MK, Batzer MA, Marth GT. Tangram: a comprehensive toolbox for mobile element insertion detection. Bmc Genomics. 15: 795. PMID 25228379 DOI: 10.1186/1471-2164-15-795  1
2014 Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, et al. Gibbon genome and the fast karyotype evolution of small apes. Nature. 513: 195-201. PMID 25209798 DOI: 10.1038/nature13679  1
2014 . The common marmoset genome provides insight into primate biology and evolution. Nature Genetics. 46: 850-7. PMID 25038751 DOI: 10.1038/ng.3042  1
2014 Martin P, Jazwinski SM, Davey A, Green RC, Macdonald M, Margrett JA, Siegler IC, Arnold J, Woodard JL, Johnson MA, Kim S, Dai J, Li L, Batzer MA, Poon LW, et al. APOE ϵ4, rated life experiences, and affect among centenarians. Aging & Mental Health. 18: 240-7. PMID 23998924 DOI: 10.1080/13607863.2013.827624  1
2013 McLain AT, Carman GW, Fullerton ML, Beckstrom TO, Gensler W, Meyer TJ, Faulk C, Batzer MA. Analysis of western lowland gorilla (Gorilla gorilla gorilla) specific Alu repeats. Mobile Dna. 4: 26. PMID 24262036 DOI: 10.1186/1759-8753-4-26  1
2013 Hormozdiari F, Konkel MK, Prado-Martinez J, Chiatante G, Herraez IH, Walker JA, Nelson B, Alkan C, Sudmant PH, Huddleston J, Catacchio CR, Ko A, Malig M, Baker C, ... ... Batzer MA, et al. Rates and patterns of great ape retrotransposition. Proceedings of the National Academy of Sciences of the United States of America. 110: 13457-62. PMID 23884656 DOI: 10.1073/pnas.1310914110  1
2013 Cook GW, Konkel MK, Walker JA, Bourgeois MG, Fullerton ML, Fussell JT, Herbold HD, Batzer MA. A comparison of 100 human genes using an alu element-based instability model. Plos One. 8: e65188. PMID 23755193 DOI: 10.1371/journal.pone.0065188  1
2013 Witherspoon DJ, Zhang Y, Xing J, Watkins WS, Ha H, Batzer MA, Jorde LB. Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations. Genome Research. 23: 1170-81. PMID 23599355 DOI: 10.1101/gr.148973.112  1
2012 Arkhipova IR, Batzer MA, Brosius J, Feschotte C, Moran JV, Schmitz J, Jurka J. Genomic impact of eukaryotic transposable elements. Mobile Dna. 3: 19. PMID 23171443 DOI: 10.1186/1759-8753-3-19  1
2012 McLain AT, Meyer TJ, Faulk C, Herke SW, Oldenburg JM, Bourgeois MG, Abshire CF, Roos C, Batzer MA. An alu-based phylogeny of lemurs (infraorder: Lemuriformes). Plos One. 7: e44035. PMID 22937148 DOI: 10.1371/journal.pone.0044035  1
2012 Meyer TJ, McLain AT, Oldenburg JM, Faulk C, Bourgeois MG, Conlin EM, Mootnick AR, de Jong PJ, Roos C, Carbone L, Batzer MA. An Alu-based phylogeny of gibbons (hylobatidae). Molecular Biology and Evolution. 29: 3441-50. PMID 22683814 DOI: 10.1093/molbev/mss149  1
2012 Carbone L, Harris RA, Mootnick AR, Milosavljevic A, Martin DI, Rocchi M, Capozzi O, Archidiacono N, Konkel MK, Walker JA, Batzer MA, de Jong PJ. Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons. Genome Biology and Evolution. 4: 648-58. PMID 22593550 DOI: 10.1093/gbe/evs048  1
2012 Walker JA, Konkel MK, Ullmer B, Monceaux CP, Ryder OA, Hubley R, Smit AF, Batzer MA. Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers. Mobile Dna. 3: 8. PMID 22541534 DOI: 10.1186/1759-8753-3-8  0.8
2011 Cherry KE, Brown JS, Marks LD, Galea S, Volaufova J, Lefante C, Su LJ, Welsh DA, Jazwinski SM. Longitudinal Assessment of Cognitive and Psychosocial Functioning After Hurricanes Katrina and Rita: Exploring Disaster Impact on Middle-Aged, Older, and Oldest-Old Adults. Journal of Applied Biobehavioral Research. 16: 187-211. PMID 23526570 DOI: 10.1111/j.1751-9861.2011.00073.x  1
2011 Cherry KE, Brown JS, Marks LD, Galea S, Volaufova J, Lefante C, Su LJ, Welsh DA, Jazwinski SM. Longitudinal Assessment of Cognitive and Psychosocial Functioning After Hurricanes Katrina and Rita: Exploring Disaster Impact on Middle-Aged, Older, and Oldest-Old Adults. Journal of Applied Biobehavioral Research. 16: 187-211. PMID 23526570 DOI: 10.1111/j.1751-9861.2011.00073.x  1
2011 de Koning AP, Gu W, Castoe TA, Batzer MA, Pollock DD. Repetitive elements may comprise over two-thirds of the human genome. Plos Genetics. 7: e1002384. PMID 22144907 DOI: 10.1371/journal.pgen.1002384  1
2011 Cook GW, Konkel MK, Major JD, Walker JA, Han K, Batzer MA. Alu pair exclusions in the human genome. Mobile Dna. 2: 10. PMID 21943335 DOI: 10.1186/1759-8753-2-10  1
2011 Stewart C, Kural D, Strömberg MP, Walker JA, Konkel MK, Stütz AM, Urban AE, Grubert F, Lam HY, Lee WP, Busby M, Indap AR, Garrison E, Huff C, Xing J, ... ... Batzer MA, et al. A comprehensive map of mobile element insertion polymorphisms in humans. Plos Genetics. 7: e1002236. PMID 21876680 DOI: 10.1371/journal.pgen.1002236  1
2011 Ray DA, Batzer MA. Reading TE leaves: new approaches to the identification of transposable element insertions. Genome Research. 21: 813-20. PMID 21632748 DOI: 10.1101/gr.110528.110  1
2011 Roos C, Zinner D, Kubatko LS, Schwarz C, Yang M, Meyer D, Nash SD, Xing J, Batzer MA, Brameier M, Leendertz FH, Ziegler T, Perwitasari-Farajallah D, Nadler T, Walter L, et al. Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys. Bmc Evolutionary Biology. 11: 77. PMID 21435245 DOI: 10.1186/1471-2148-11-77  1
2011 Meganathan PR, Dubey B, Batzer MA, Ray DA, Haque I. Complete mitochondrial genome sequences of three Crocodylus species and their comparison within the Order Crocodylia. Gene. 478: 35-41. PMID 21310220 DOI: 10.1016/j.gene.2011.01.012  1
2011 Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, Abyzov A, Yoon SC, Ye K, Cheetham RK, Chinwalla A, Conrad DF, Fu Y, Grubert F, Hajirasouliha I, ... ... Batzer MA, et al. Mapping copy number variation by population-scale genome sequencing. Nature. 470: 59-65. PMID 21293372 DOI: 10.1038/nature09708  1
2011 Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Batzer MA, et al. Comparative and demographic analysis of orang-utan genomes. Nature. 469: 529-33. PMID 21270892 DOI: 10.1038/nature09687  1
2010 Konkel MK, Walker JA, Batzer MA. LINEs and SINEs of primate evolution. Evolutionary Anthropology. 19: 236-249. PMID 25147443 DOI: 10.1002/evan.20283  1
2010 Meganathan PR, Dubey B, Batzer MA, Ray DA, Haque I. Molecular phylogenetic analyses of genus Crocodylus (Eusuchia, Crocodylia, Crocodylidae) and the taxonomic position of Crocodylus porosus. Molecular Phylogenetics and Evolution. 57: 393-402. PMID 20601012 DOI: 10.1016/j.ympev.2010.06.011  1
2010 Witherspoon DJ, Xing J, Zhang Y, Watkins WS, Batzer MA, Jorde LB. Mobile element scanning (ME-Scan) by targeted high-throughput sequencing. Bmc Genomics. 11: 410. PMID 20591181 DOI: 10.1186/1471-2164-11-410  1
2010 Jazwinski SM, Kim S, Dai J, Li L, Bi X, Jiang JC, Arnold J, Batzer MA, Walker JA, Welsh DA, Lefante CM, Volaufova J, Myers L, Su LJ, Hausman DB, et al. HRAS1 and LASS1 with APOE are associated with human longevity and healthy aging. Aging Cell. 9: 698-708. PMID 20569235 DOI: 10.1111/j.1474-9726.2010.00600.x  1
2010 Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, ... ... Batzer MA, et al. The genome of a songbird. Nature. 464: 757-62. PMID 20360741 DOI: 10.1038/nature08819  1
2010 Konkel MK, Batzer MA. A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome. Seminars in Cancer Biology. 20: 211-21. PMID 20307669 DOI: 10.1016/j.semcancer.2010.03.001  1
2010 Ray DA, Han K, Walker JA, Batzer MA. Laboratory methods for the analysis of primate mobile elements. Methods in Molecular Biology (Clifton, N.J.). 628: 153-79. PMID 20238081 DOI: 10.1007/978-1-60327-367-1_9  1
2010 Cordaux R, Sen SK, Konkel MK, Batzer MA. Computational methods for the analysis of primate mobile elements. Methods in Molecular Biology (Clifton, N.J.). 628: 137-51. PMID 20238080 DOI: 10.1007/978-1-60327-367-1_8  1
2010 Meyer TJ, Srikanta D, Conlin EM, Batzer MA. Heads or tails: L1 insertion-associated 5' homopolymeric sequences. Mobile Dna. 1: 7. PMID 20226075 DOI: 10.1186/1759-8753-1-7  1
2009 Witherspoon DJ, Watkins WS, Zhang Y, Xing J, Tolpinrud WL, Hedges DJ, Batzer MA, Jorde LB. Alu repeats increase local recombination rates. Bmc Genomics. 10: 530. PMID 19917129 DOI: 10.1186/1471-2164-10-530  1
2009 Ray DA, Platt RN, Batzer MA. Reading between the LINEs to see into the past. Trends in Genetics : Tig. 25: 475-9. PMID 19837475 DOI: 10.1016/j.tig.2009.09.006  1
2009 Salem AH, Farid E, Fadel R, Abu-Hijleh M, Almawi W, Han K, Batzer MA. Distribution of four HIV type 1-resistance polymorphisms (CCR5-Delta32, CCR5-m303, CCR2-64I, and SDF1-3'A) in the Bahraini population. Aids Research and Human Retroviruses. 25: 973-7. PMID 19803715 DOI: 10.1089/aid.2009.0066  1
2009 Cordaux R, Batzer MA. The impact of retrotransposons on human genome evolution. Nature Reviews. Genetics. 10: 691-703. PMID 19763152 DOI: 10.1038/nrg2640  1
2009 Damert A, Raiz J, Horn AV, Löwer J, Wang H, Xing J, Batzer MA, Löwer R, Schumann GG. 5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome. Genome Research. 19: 1992-2008. PMID 19652014 DOI: 10.1101/gr.093435.109  1
2009 Salem AH, Batzer MA. High frequency of the D allele of the angiotensin-converting enzyme gene in Arabic populations. Bmc Research Notes. 2: 99. PMID 19505317 DOI: 10.1186/1756-0500-2-99  1
2009 Srikanta D, Sen SK, Conlin EM, Batzer MA. Internal priming: an opportunistic pathway for L1 and Alu retrotransposition in hominins. Gene. 448: 233-41. PMID 19501635 DOI: 10.1016/j.gene.2009.05.014  1
2009 Li J, Han K, Xing J, Kim HS, Rogers J, Ryder OA, Disotell T, Yue B, Batzer MA. Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements. Gene. 448: 242-9. PMID 19497354 DOI: 10.1016/j.gene.2009.05.013  1
2009 Salem AH, Han K, Batzer MA. Allele frequencies of the human platelet antigen-1 in the Egyptian population. Bmc Research Notes. 2: 90. PMID 19457247 DOI: 10.1186/1756-0500-2-90  1
2009 Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S, Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 19: 1516-26. PMID 19439515 DOI: 10.1101/gr.091827.109  1
2009 Pace JK, Sen SK, Batzer MA, Feschotte C. Repair-mediated duplication by capture of proximal chromosomal DNA has shaped vertebrate genome evolution. Plos Genetics. 5: e1000469. PMID 19424419 DOI: 10.1371/journal.pgen.1000469  1
2009 Srikanta D, Sen SK, Huang CT, Conlin EM, Rhodes RM, Batzer MA. An alternative pathway for Alu retrotransposition suggests a role in DNA double-strand break repair. Genomics. 93: 205-12. PMID 18951971 DOI: 10.1016/j.ygeno.2008.09.016  1
2009 Tae YL, Han K, Park DS, Soper SS, Batzer MA, Nikitopoulos DE, Murphy MC. A multi-function, microfluidic module for mutation detection Transducers 2009 - 15th International Conference On Solid-State Sensors, Actuators and Microsystems. 120-123. DOI: 10.1109/SENSOR.2009.5285548  1
2009 Tae YL, Han K, Park DS, Soper SS, Batzer MA, Nikitopoulos DE, Murphy MC. A multi-function, microfluidic module for mutation detection Transducers 2009 - 15th International Conference On Solid-State Sensors, Actuators and Microsystems. 120-123. DOI: 10.1109/SENSOR.2009.5285548  0.88
2009 Batzer MA. Editorial Gene. 430: 3. DOI: 10.1016/j.gene.2008.12.003  1
2009 Lee TY, Han K, Nikitopoulos DE, Soper SS, Batzer MA, Murphy MC. A polymer, microfluidic analyzer for mutation detection Proceedings of Conference, Microtas 2009 - the 13th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 415-417.  1
2009 Lee TY, Han K, Nikitopoulos DE, Soper SS, Batzer MA, Murphy MC. A polymer, microfluidic analyzer for mutation detection Proceedings of Conference, Microtas 2009 - the 13th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 415-417.  0.88
2008 Lee J, Han K, Meyer TJ, Kim HS, Batzer MA. Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons. Plos One. 3: e4047. PMID 19112500 DOI: 10.1371/journal.pone.0004047  1
2008 Han K, Lee J, Meyer TJ, Remedios P, Goodwin L, Batzer MA. L1 recombination-associated deletions generate human genomic variation. Proceedings of the National Academy of Sciences of the United States of America. 105: 19366-71. PMID 19036926 DOI: 10.1073/pnas.0807866105  1
2008 Gu W, Castoe TA, Hedges DJ, Batzer MA, Pollock DD. Identification of repeat structure in large genomes using repeat probability clouds. Analytical Biochemistry. 380: 77-83. PMID 18541131 DOI: 10.1016/j.ab.2008.05.015  1
2008 Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, ... ... Batzer MA, et al. Genome analysis of the platypus reveals unique signatures of evolution. Nature. 453: 175-83. PMID 18464734 DOI: 10.1038/nature06936  1
2008 Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, ... ... Batzer MA, et al. Genome analysis of the platypus reveals unique signatures of evolution (Nature (2008) 453, (175-183)) Nature. 455: 256. DOI: 10.1038/nature07253  1
2008 Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, ... ... Batzer MA, et al. Genome analysis of the platypus reveals unique signatures of evolution (Nature (2008) 453, (175-183)) Nature. 455: 256. DOI: 10.1038/nature07253  1
2008 Njoroge SK, Witek MA, Hupert ML, Coyne J, Barron A, Batzer MA, Soper SA. Human identification using ALUS analyzed via an integrated microfluidic system with multicolor fluorescence and microchip free solution conjugate electrophoresis 12th International Conference On Miniaturized Systems For Chemistry and Life Sciences - the Proceedings of Microtas 2008 Conference. 946-948.  1
2007 Xing J, Witherspoon DJ, Ray DA, Batzer MA, Jorde LB. Mobile DNA elements in primate and human evolution. American Journal of Physical Anthropology. 2-19. PMID 18046749 DOI: 10.1002/ajpa.20722  1
2007 Han K, Lee J, Meyer TJ, Wang J, Sen SK, Srikanta D, Liang P, Batzer MA. Alu recombination-mediated structural deletions in the chimpanzee genome. Plos Genetics. 3: 1939-49. PMID 17953488 DOI: 10.1371/journal.pgen.0030184  1
2007 Sen SK, Huang CT, Han K, Batzer MA. Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome. Nucleic Acids Research. 35: 3741-51. PMID 17517773 DOI: 10.1093/nar/gkm317  1
2007 Cordaux R, Srikanta D, Lee J, Stoneking M, Batzer MA. In search of polymorphic Alu insertions with restricted geographic distributions. Genomics. 90: 154-8. PMID 17498924 DOI: 10.1016/j.ygeno.2007.03.010  1
2007 Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, ... ... Batzer MA, et al. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature. 447: 167-77. PMID 17495919 DOI: 10.1038/nature05805  1
2007 Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. Genome Research. 17: 992-1004. PMID 17495012 DOI: 10.1101/gr.6070707  1
2007 Gu W, Ray DA, Walker JA, Barnes EW, Gentles AJ, Samollow PB, Jurka J, Batzer MA, Pollock DD. SINEs, evolution and genome structure in the opossum. Gene. 396: 46-58. PMID 17442506 DOI: 10.1016/j.gene.2007.02.028  1
2007 Han K, Konkel MK, Xing J, Wang H, Lee J, Meyer TJ, Huang CT, Sandifer E, Hebert K, Barnes EW, Hubley R, Miller W, Smit AF, Ullmer B, Batzer MA. Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome. Science (New York, N.Y.). 316: 238-40. PMID 17431169 DOI: 10.1126/science.1139462  1
2007 Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science (New York, N.Y.). 316: 222-34. PMID 17431167 DOI: 10.1126/science.1139247  1
2007 Witherspoon DJ, Wooding S, Rogers AR, Marchani EE, Watkins WS, Batzer MA, Jorde LB. Genetic similarities within and between human populations. Genetics. 176: 351-9. PMID 17339205 DOI: 10.1534/genetics.106.067355  1
2007 Shewale JG, Schneida E, Wilson J, Walker JA, Batzer MA, Sinha SK. Human genomic DNA quantitation system, H-Quant: development and validation for use in forensic casework. Journal of Forensic Sciences. 52: 364-70. PMID 17316233 DOI: 10.1111/j.1556-4029.2006.00369.x  1
2007 Rogers AR, Wooding S, Huff CD, Batzer MA, Jorde LB. Ancestral alleles and population origins: inferences depend on mutation rate. Molecular Biology and Evolution. 24: 990-7. PMID 17267423 DOI: 10.1093/molbev/msm018  1
2007 Xing J, Wang H, Zhang Y, Ray DA, Tosi AJ, Disotell TR, Batzer MA. A mobile element-based evolutionary history of guenons (tribe Cercopithecini). Bmc Biology. 5: 5. PMID 17266768 DOI: 10.1186/1741-7007-5-5  1
2007 Salem AH, Batzer MA. Distribution of the HIV resistance CCR5-Delta32 allele among Egyptians and Syrians. Mutation Research. 616: 175-80. PMID 17166523 DOI: 10.1016/j.mrfmmm.2006.11.024  1
2007 Ray DA, Walker JA, Batzer MA. Mobile element-based forensic genomics. Mutation Research. 616: 24-33. PMID 17161440 DOI: 10.1016/j.mrfmmm.2006.11.019  1
2007 Herke SW, Xing J, Ray DA, Zimmerman JW, Cordaux R, Batzer MA. A SINE-based dichotomous key for primate identification. Gene. 390: 39-51. PMID 17056208 DOI: 10.1016/j.gene.2006.08.015  1
2007 Lee J, Cordaux R, Han K, Wang J, Hedges DJ, Liang P, Batzer MA. Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons. Gene. 390: 18-27. PMID 17055192 DOI: 10.1016/j.gene.2006.08.029  1
2007 Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertions through comparison of two human genome sequence assemblies. Gene. 390: 28-38. PMID 17034961 DOI: 10.1016/j.gene.2006.07.040  1
2007 Batzer MA, Deininger PL, Jurka J, Moran JV. Introduction for the Gene special issue dedicated to the meeting "Genomic impact of eukaryotic transposable elements" at Asilomar. Gene. 390: 1-2. PMID 17027200 DOI: 10.1016/j.gene.2006.07.036  1
2006 Callinan PA, Batzer MA. Retrotransposable elements and human disease. Genome Dynamics. 1: 104-15. PMID 18724056 DOI: 10.1159/000092503  1
2006 Ray DA, Xing J, Salem AH, Batzer MA. SINEs of a nearly perfect character. Systematic Biology. 55: 928-35. PMID 17345674 DOI: 10.1080/10635150600865419  1
2006 Xing J, Wang H, Belancio VP, Cordaux R, Deininger PL, Batzer MA. Emergence of primate genes by retrotransposon-mediated sequence transduction. Proceedings of the National Academy of Sciences of the United States of America. 103: 17608-13. PMID 17101974 DOI: 10.1073/pnas.0603224103  1
2006 Witherspoon DJ, Marchani EE, Watkins WS, Ostler CT, Wooding SP, Anders BA, Fowlkes JD, Boissinot S, Furano AV, Ray DA, Rogers AR, Batzer MA, Jorde LB. Human population genetic structure and diversity inferred from polymorphic L1(LINE-1) and Alu insertions. Human Heredity. 62: 30-46. PMID 17003565 DOI: 10.1159/000095851  1
2006 Sen SK, Han K, Wang J, Lee J, Wang H, Callinan PA, Dyer M, Cordaux R, Liang P, Batzer MA. Human genomic deletions mediated by recombination between Alu elements. American Journal of Human Genetics. 79: 41-53. PMID 16773564 DOI: 10.1086/504600  1
2006 Battilana J, Fagundes NJ, Heller AH, Goldani A, Freitas LB, Tarazona-Santos E, Munkhbat B, Munkhtuvshin N, Krylov M, Benevolenskaia L, Arnett FC, Batzer MA, Deininger PL, Salzano FM, Bonatto SL. Alu insertion polymorphisms in Native Americans and related Asian populations. Annals of Human Biology. 33: 142-60. PMID 16684689 DOI: 10.1080/03014460500487347  1
2006 Cordaux R, Udit S, Batzer MA, Feschotte C. Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. Proceedings of the National Academy of Sciences of the United States of America. 103: 8101-6. PMID 16672366 DOI: 10.1073/pnas.0601161103  1
2006 Seleme MC, Vetter MR, Cordaux R, Bastone L, Batzer MA, Kazazian HH. Extensive individual variation in L1 retrotransposition capability contributes to human genetic diversity. Proceedings of the National Academy of Sciences of the United States of America. 103: 6611-6. PMID 16618923 DOI: 10.1073/pnas.0601324103  1
2006 Cordaux R, Lee J, Dinoso L, Batzer MA. Recently integrated Alu retrotransposons are essentially neutral residents of the human genome. Gene. 373: 138-44. PMID 16527433 DOI: 10.1016/j.gene.2006.01.020  1
2006 Cordaux R, Hedges DJ, Herke SW, Batzer MA. Estimating the retrotransposition rate of human Alu elements. Gene. 373: 134-7. PMID 16522357 DOI: 10.1016/j.gene.2006.01.019  1
2006 Wang J, Song L, Grover D, Azrak S, Batzer MA, Liang P. dbRIP: a highly integrated database of retrotransposon insertion polymorphisms in humans. Human Mutation. 27: 323-9. PMID 16511833 DOI: 10.1002/humu.20307  1
2006 Cordaux R, Batzer MA. Teaching an old dog new tricks: SINEs of canine genomic diversity. Proceedings of the National Academy of Sciences of the United States of America. 103: 1157-8. PMID 16432182 DOI: 10.1073/pnas.0510714103  0.88
2006 Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms. Gene. 365: 11-20. PMID 16376498 DOI: 10.1016/j.gene.2005.09.031  1
2006 Hsu HC, Scott DK, Zhang P, Zhou J, Yang P, Wu Q, Schroeder HW, Gerald LB, Ravussin E, Jazwinski SM, Mountz JD, Batzer M, Black M, Broussard EA, Byerley L, et al. CD8 T-cell immune phenotype of successful aging Mechanisms of Ageing and Development. 127: 231-239. PMID 16313945 DOI: 10.1016/j.mad.2005.10.001  1
2005 Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. Journal of Molecular Biology. 354: 994-1007. PMID 16288912 DOI: 10.1016/j.jmb.2005.09.085  1
2005 Ray DA, Batzer MA. Tracking Alu evolution in New World primates. Bmc Evolutionary Biology. 5: 51. PMID 16209711 DOI: 10.1186/1471-2148-5-51  1
2005 Hedges DJ, Cordaux R, Xing J, Witherspoon DJ, Rogers AR, Jorde LB, Batzer MA. Modeling the amplification dynamics of human Alu retrotransposons. Plos Computational Biology. 1: e44. PMID 16201008 DOI: 10.1371/journal.pcbi.0010044  1
2005 Ray DA, Hedges DJ, Herke SW, Fowlkes JD, Barnes EW, LaVie DK, Goodwin LM, Densmore LD, Batzer MA. Chompy: an infestation of MITE-like repetitive elements in the crocodilian genome. Gene. 362: 1-10. PMID 16183215 DOI: 10.1016/j.gene.2005.07.010  1
2005 Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, Turteltaub K, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Science International. 153: 117-24. PMID 16139099 DOI: 10.1016/j.forsciint.2004.10.017  1
2005 Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenetic and Genome Research. 110: 537-42. PMID 16093706 DOI: 10.1159/000084986  1
2005 Han K, Sen SK, Wang J, Callinan PA, Lee J, Cordaux R, Liang P, Batzer MA. Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages. Nucleic Acids Research. 33: 4040-52. PMID 16034026 DOI: 10.1093/nar/gki718  1
2005 Hedges DJ, Batzer MA. From the margins of the genome: mobile elements shape primate evolution. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 27: 785-94. PMID 16015599 DOI: 10.1002/bies.20268  1
2005 Fagundes NJ, Salzano FM, Batzer MA, Deininger PL, Bonatto SL. Worldwide genetic variation at the 3'-UTR region of the LDLR gene: possible influence of natural selection. Annals of Human Genetics. 69: 389-400. PMID 15996168 DOI: 10.1046/j.1529-8817.2005.00163.x  1
2005 Xing J, Wang H, Han K, Ray DA, Huang CH, Chemnick LG, Stewart CB, Disotell TR, Ryder OA, Batzer MA. A mobile element based phylogeny of Old World monkeys. Molecular Phylogenetics and Evolution. 37: 872-80. PMID 15936216 DOI: 10.1016/j.ympev.2005.04.015  1
2005 Han K, Xing J, Wang H, Hedges DJ, Garber RK, Cordaux R, Batzer MA. Under the genomic radar: the stealth model of Alu amplification. Genome Research. 15: 655-64. PMID 15867427 DOI: 10.1101/gr.3492605  1
2005 Callinan PA, Wang J, Herke SW, Garber RK, Liang P, Batzer MA. Alu retrotransposition-mediated deletion. Journal of Molecular Biology. 348: 791-800. PMID 15843013 DOI: 10.1016/j.jmb.2005.02.043  1
2005 Ray DA, Xing J, Hedges DJ, Hall MA, Laborde ME, Anders BA, White BR, Stoilova N, Fowlkes JD, Landry KE, Chemnick LG, Ryder OA, Batzer MA. Alu insertion loci and platyrrhine primate phylogeny. Molecular Phylogenetics and Evolution. 35: 117-26. PMID 15737586 DOI: 10.1016/j.ympev.2004.10.023  1
2005 Salem AH, Ray DA, Hedges DJ, Jurka J, Batzer MA. Analysis of the human Alu Ye lineage. Bmc Evolutionary Biology. 5: 18. PMID 15725352 DOI: 10.1186/1471-2148-5-18  1
2005 Ho HJ, Ray DA, Salem AH, Myers JS, Batzer MA. Straightening out the LINEs: LINE-1 orthologous loci. Genomics. 85: 201-7. PMID 15676278 DOI: 10.1016/j.ygeno.2004.10.016  1
2005 Walker JA, Hedges DJ, Perodeau BP, Landry KE, Stoilova N, Laborde ME, Shewale J, Sinha SK, Batzer MA. Multiplex polymerase chain reaction for simultaneous quantitation of human nuclear, mitochondrial, and male Y-chromosome DNA: application in human identification. Analytical Biochemistry. 337: 89-97. PMID 15649380 DOI: 10.1016/j.ab.2004.09.036  1
2005 Salem AH, Ray DA, Batzer MA. Identity by descent and DNA sequence variation of human SINE and LINE elements. Cytogenetic and Genome Research. 108: 63-72. PMID 15545717 DOI: 10.1159/000080803  1
2004 Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Human Genomics. 1: 167-78. PMID 15588477 DOI: 10.1186/1479-7364-1-3-167  1
2004 Xing J, Hedges DJ, Han K, Wang H, Cordaux R, Batzer MA. Alu element mutation spectra: molecular clocks and the effect of DNA methylation. Journal of Molecular Biology. 344: 675-82. PMID 15533437 DOI: 10.1016/j.jmb.2004.09.058  1
2004 Cordaux R, Hedges DJ, Batzer MA. Retrotransposition of Alu elements: how many sources? Trends in Genetics : Tig. 20: 464-7. PMID 15363897 DOI: 10.1016/j.tig.2004.07.012  1
2004 Lovell AD, Yotova V, Xiao F, Batzer MA, Labuda D. Polymorphisms within a polymorphism: SNPs in and around a polymorphic Alu insertion in intron 44 of the human dystrophin gene. Journal of Human Genetics. 49: 269-72. PMID 15362571 DOI: 10.1007/s10038-004-0138-3  1
2004 Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. Journal of Molecular Biology. 342: 109-18. PMID 15313610 DOI: 10.1016/j.jmb.2004.07.016  1
2004 Hedges DJ, Callinan PA, Cordaux R, Xing J, Barnes E, Batzer MA. Differential alu mobilization and polymorphism among the human and chimpanzee lineages. Genome Research. 14: 1068-75. PMID 15173113 DOI: 10.1101/gr.2530404  1
2004 Walker JA, Hughes DA, Hedges DJ, Anders BA, Laborde ME, Shewale J, Sinha SK, Batzer MA. Quantitative PCR for DNA identification based on genome-specific interspersed repetitive elements. Genomics. 83: 518-27. PMID 14962678 DOI: 10.1016/j.ygeno.2003.09.003  1
2004 Savas S, Frischhertz B, Batzer MA, Deininger PL, Keats BJ. Structure, diversity, and evolution of the 45-bp VNTR in intron 5 of the USH1C gene. Genomics. 83: 439-44. PMID 14962669 DOI: 10.1016/j.ygeno.2003.09.006  1
2004 Walker JA, Garber RK, Hedges DJ, Kilroy GE, Xing J, Batzer MA. Resolution of mixed human DNA samples using mitochondrial DNA sequence variants. Analytical Biochemistry. 325: 171-3. PMID 14715300 DOI: 10.1016/j.ab.2003.10.003  1
2004 Ray DA, Dever JA, Platt SG, Rainwater TR, Finger AG, McMurry ST, Batzer MA, Barr B, Stafford PJ, McKnight J, Densmore LD. Low levels of nucleotide diversity in Crocodylus moreletii and evidence of hybridization with C. acutus Conservation Genetics. 5: 449-462. DOI: 10.1023/B:COGE.0000041024.96928.fe  1
2003 Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. Journal of Molecular Evolution. 57: S76-89. PMID 15008405 DOI: 10.1007/s00239-003-0009-0  1
2003 Deininger PL, Moran JV, Batzer MA, Kazazian HH. Mobile elements and mammalian genome evolution. Current Opinion in Genetics & Development. 13: 651-8. PMID 14638329 DOI: 10.1016/j.gde.2003.10.013  1
2003 Chen QY, Jackson N, Vargas A, Chalew S, Rao J, Batzer M, Lan MS, Chang YH, Mokhashi M, Liu D. Identification of three genomic haplotypes 5' to the human CD1D gene and their distribution in four ethnic groups. Tissue Antigens. 62: 442-8. PMID 14617053 DOI: 10.1034/j.1399-0039.2003.00116.x  1
2003 Lutz SM, Vincent BJ, Kazazian HH, Batzer MA, Moran JV. Allelic heterogeneity in LINE-1 retrotransposition activity. American Journal of Human Genetics. 73: 1431-7. PMID 14610717 DOI: 10.1086/379744  1
2003 Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 317: 103-10. PMID 14604797 DOI: 10.1016/S0378-1119(03)00662-0  1
2003 Salem AH, Ray DA, Xing J, Callinan PA, Myers JS, Hedges DJ, Garber RK, Witherspoon DJ, Jorde LB, Batzer MA. Alu elements and hominid phylogenetics. Proceedings of the National Academy of Sciences of the United States of America. 100: 12787-91. PMID 14561894 DOI: 10.1073/pnas.2133766100  1
2003 Zietkiewicz E, Yotova V, Gehl D, Wambach T, Arrieta I, Batzer M, Cole DE, Hechtman P, Kaplan F, Modiano D, Moisan JP, Michalski R, Labuda D. Haplotypes in the dystrophin DNA segment point to a mosaic origin of modern human diversity. American Journal of Human Genetics. 73: 994-1015. PMID 14513410 DOI: 10.1086/378777  1
2003 Watkins WS, Rogers AR, Ostler CT, Wooding S, Bamshad MJ, Brassington AM, Carroll ML, Nguyen SV, Walker JA, Prasad BV, Reddy PG, Das PK, Batzer MA, Jorde LB. Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms. Genome Research. 13: 1607-18. PMID 12805277 DOI: 10.1101/gr.894603  1
2003 Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Molecular Biology and Evolution. 20: 1349-61. PMID 12777511 DOI: 10.1093/molbev/msg150  1
2003 Vincent BJ, Myers JS, Ho HJ, Kilroy GE, Walker JA, Watkins WS, Jorde LB, Batzer MA. Following the LINEs: an analysis of primate genomic variation at human-specific LINE-1 insertion sites. Molecular Biology and Evolution. 20: 1338-48. PMID 12777507 DOI: 10.1093/molbev/msg146  1
2003 Walker JA, Hughes DA, Anders BA, Shewale J, Sinha SK, Batzer MA. Quantitative intra-short interspersed element PCR for species-specific DNA identification. Analytical Biochemistry. 316: 259-69. PMID 12711348 DOI: 10.1016/S0003-2697(03)00095-2  1
2003 Walker JA, Kilroy GE, Xing J, Shewale J, Sinha SK, Batzer MA. Human DNA quantitation using Alu element-based polymerase chain reaction. Analytical Biochemistry. 315: 122-8. PMID 12672420 DOI: 10.1016/S0003-2697(03)00081-2  1
2003 Kayser M, Brauer S, Schädlich H, Prinz M, Batzer MA, Zimmerman PA, Boatin BA, Stoneking M. Y chromosome STR haplotypes and the genetic structure of U.S. populations of African, European, and Hispanic ancestry. Genome Research. 13: 624-34. PMID 12671003 DOI: 10.1101/gr.463003  1
2003 Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. Journal of Molecular Biology. 326: 1127-46. PMID 12589758 DOI: 10.1016/S0022-2836(03)00032-9  1
2003 Bamshad MJ, Wooding S, Watkins WS, Ostler CT, Batzer MA, Jorde LB. Human population genetic structure and inference of group membership. American Journal of Human Genetics. 72: 578-89. PMID 12557124 DOI: 10.1086/368061  1
2003 Hedges DJ, Walker JA, Callinan PA, Shewale JG, Sinha SK, Batzer MA. Mobile element-based assay for human gender determination. Analytical Biochemistry. 312: 77-9. PMID 12479838 DOI: 10.1016/S0003-2697(02)00430-X  1
2002 Deininger PL, Batzer MA. Mammalian retroelements. Genome Research. 12: 1455-65. PMID 12368238 DOI: 10.1101/gr.282402  1
2002 Roy-Engel AM, Salem AH, Oyeniran OO, Deininger L, Hedges DJ, Kilroy GE, Batzer MA, Deininger PL. Active Alu element "A-tails": size does matter. Genome Research. 12: 1333-44. PMID 12213770 DOI: 10.1101/gr.384802  1
2002 Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD, Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. American Journal of Human Genetics. 71: 312-26. PMID 12070800 DOI: 10.1086/341718  1
2002 Kayser M, Brauer S, Willuweit S, Schädlich H, Batzer MA, Zawacki J, Prinz M, Roewer L, Stoneking M. Online Y-chromosomal short tandem repeat haplotype reference database (YHRD) for U.S. populations. Journal of Forensic Sciences. 47: 513-9. PMID 12051329  1
2002 Battilana J, Bonatto SL, Freitas LB, Hutz MH, Weimer TA, Callegari-Jacques SM, Batzer MA, Hill K, Hurtado AM, Tsuneto LT, Petzl-Erler ML, Salzano FM. Alu insertions versus blood group plus protein genetic variability in four Amerindian populations. Annals of Human Biology. 29: 334-47. PMID 12031142 DOI: 10.1080/03014460110086835  1
2002 Morrish TA, Gilbert N, Myers JS, Vincent BJ, Stamato TD, Taccioli GE, Batzer MA, Moran JV. DNA repair mediated by endonuclease-independent LINE-1 retrotransposition. Nature Genetics. 31: 159-65. PMID 12006980 DOI: 10.1038/ng898  1
2002 Batzer MA, Deininger PL. Alu repeats and human genomic diversity. Nature Reviews. Genetics. 3: 370-9. PMID 11988762 DOI: 10.1038/nrg798  1
2002 Donaldson CJ, Crapanzano JP, Watson JC, Levine EA, Batzer MA. PROGINS Alu insertion and human genomic diversity. Mutation Research. 501: 137-41. PMID 11934445 DOI: 10.1016/S0027-5107(02)00015-5  1
2002 Romualdi C, Balding D, Nasidze IS, Risch G, Robichaux M, Sherry ST, Stoneking M, Batzer MA, Barbujani G. Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms. Genome Research. 12: 602-12. PMID 11932244 DOI: 10.1101/gr.214902  1
2002 Roy-Engel AM, Carroll ML, El-Sawy M, Salem AH, Garber RK, Nguyen SV, Deininger PL, Batzer MA. Non-traditional Alu evolution and primate genomic diversity. Journal of Molecular Biology. 316: 1033-40. PMID 11884141 DOI: 10.1006/jmbi.2001.5380  1
2002 Savas S, Frischhertz B, Pelias MZ, Batzer MA, Deininger PL, Keats BB. The USH1C 216G-->A mutation and the 9-repeat VNTR(t,t) allele are in complete linkage disequilibrium in the Acadian population. Human Genetics. 110: 95-7. PMID 11810303 DOI: 10.1007/s00439-001-0653-7  1
2001 Rondeau G, Moreau I, Bézieau S, Petit JL, Heilig R, Fernandez S, Pennarun E, Myers JS, Batzer MA, Moisan JP, Devilder MC. Comprehensive analysis of a large genomic sequence at the putative B-cell chronic lymphocytic leukaemia (B-CLL) tumour suppresser gene locus. Mutation Research. 458: 55-70. PMID 11691637 DOI: 10.1016/S0027-5107(01)00219-6  1
2001 Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 159: 279-90. PMID 11560904  1
2001 Mannino JL, Kim W, Wernick M, Nguyen SV, Braquet R, Adamson AW, Den Z, Batzer MA, Collins CC, Brown KD. Evidence for alternate splicing within the mRNA transcript encoding the DNA damage response kinase ATR. Gene. 272: 35-43. PMID 11470508 DOI: 10.1016/S0378-1119(01)00543-1  1
2001 Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, ... Batzer MA, et al. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. Journal of Molecular Biology. 311: 17-40. PMID 11469855 DOI: 10.1006/jmbi.2001.4847  1
2001 Justice CM, Den Z, Nguyen SV, Stoneking M, Deininger PL, Batzer MA, Keats BJ. Phylogenetic analysis of the Friedreich ataxia GAA trinucleotide repeat. Journal of Molecular Evolution. 52: 232-8. PMID 11428460  1
2001 Bamshad M, Kivisild T, Watkins WS, Dixon ME, Ricker CE, Rao BB, Naidu JM, Prasad BV, Reddy PG, Rasanayagam A, Papiha SS, Villems R, Redd AJ, Hammer MF, Nguyen SV, ... ... Batzer MA, et al. Genetic evidence on the origins of Indian caste populations. Genome Research. 11: 994-1004. PMID 11381027 DOI: 10.1101/gr.173301  1
2001 Nasidze I, Risch GM, Robichaux M, Sherry ST, Batzer MA, Stoneking M. Alu insertion polymorphisms and the genetic structure of human populations from the Caucasus. European Journal of Human Genetics : Ejhg. 9: 267-72. PMID 11313770 DOI: 10.1038/sj.ejhg.5200615  1
2001 Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. American Journal of Human Genetics. 68: 738-52. PMID 11179020 DOI: 10.1086/318793  1
2001 Stoneking M, Deininger P, Batzer M. Interspersed repeat polymorphisms and human evolution Pathologie Biologie. 49: 391. DOI: 10.1016/S0369-8114(01)00182-1  1
2000 Buchanan AV, Risch GM, Robichaux M, Sherry ST, Batzer MA, Weiss KM. Long DOP-PCR of rare archival anthropological samples. Human Biology. 72: 911-25. PMID 11236863  1
2000 Comas D, Calafell F, Benchemsi N, Helal A, Lefranc G, Stoneking M, Batzer MA, Bertranpetit J, Sajantila A. Alu insertion polymorphisms in NW Africa and the Iberian Peninsula: evidence for a strong genetic boundary through the Gibraltar Straits. Human Genetics. 107: 312-9. PMID 11129330  1
2000 Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA, Swergold GD. Reading between the LINEs: Human genomic variation induced by LINE-1 retrotransposition Genome Research. 10: 1496-1508. PMID 11042149 DOI: 10.1101/gr.149400  1
2000 Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Research. 10: 1485-95. PMID 11042148 DOI: 10.1101/gr.152300  1
2000 Jorde LB, Watkins WS, Bamshad MJ, Dixon ME, Ricker CE, Seielstad MT, Batzer MA. The distribution of human genetic diversity: a comparison of mitochondrial, autosomal, and Y-chromosome data. American Journal of Human Genetics. 66: 979-88. PMID 10712212 DOI: 10.1086/302825  1
1999 Roy AM, Carroll ML, Kass DH, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Recently integrated human Alu repeats: finding needles in the haystack. Genetica. 107: 149-61. PMID 10952208  1
1999 Szabó Z, Levi-Minzi SA, Christiano AM, Struminger C, Stoneking M, Batzer MA, Boyd CD. Sequential loss of two neighboring exons of the tropoelastin gene during primate evolution Journal of Molecular Evolution. 49: 664-671. PMID 10552047 DOI: 10.1007/PL00006587  1
1999 Good D, Schwarzenberger P, Eastham JA, Rhoads RE, Hunt JD, Collins M, Batzer M, Theodossiou C, Kolls JK, Grimes SR. Cloning and characterization of the prostate-specific membrane antigen promoter. Journal of Cellular Biochemistry. 74: 395-405. PMID 10412041 DOI: 10.1002/(SICI)1097-4644(19990901)74:3<395::AID-JCB8>3.0.CO;2-0  1
1999 Deininger PL, Batzer MA. Alu repeats and human disease. Molecular Genetics and Metabolism. 67: 183-93. PMID 10381326 DOI: 10.1006/mgme.1999.2864  1
1998 Parra EJ, Marcini A, Akey J, Martinson J, Batzer MA, Cooper R, Forrester T, Allison DB, Deka R, Ferrell RE, Shriver MD. Estimating African American admixture proportions by use of population-specific alleles. American Journal of Human Genetics. 63: 1839-51. PMID 9837836 DOI: 10.1086/302148  1
1998 Scott DA, Greinwald JH, Marietta JR, Drury S, Swiderski RE, Viñas A, DeAngelis MM, Carmi R, Ramesh A, Kraft ML, Elbedour K, Skworak AB, Friedman RA, Srikumari Srisailapathy CR, Verhoeven K, ... ... Batzer MA, et al. Identification and mutation analysis of a cochlear-expressed, zinc finger protein gene at the DFNB7/11 and dn hearing-loss loci on human chromosome 9q and mouse chromosome 19. Gene. 215: 461-9. PMID 9758550 DOI: 10.1016/S0378-1119(98)00316-3  1
1998 Viñas AM, Drury SS, DeAngelis MM, Den Z, Huang JM, Berlin CI, Hunt JD, Batzer MA, Deininger PL, Keats BJ. The mouse deafness locus (dn) is associated with an inversion on chromosome 19. Biochimica Et Biophysica Acta. 1407: 257-62. PMID 9748617 DOI: 10.1016/S0925-4439(98)00050-7  1
1998 Arcot SS, Adamson AW, Risch GW, Lafleur J, Robichaux MB, Lamerdin JE, Carrano AV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specific Alu fossils Journal of Molecular Biology. 281: 843-856. PMID 9719639 DOI: 10.1006/jmbi.1998.1984  1
1998 Zietkiewicz E, Yotova V, Jarnik M, Korab-Laskowska M, Kidd KK, Modiano D, Scozzari R, Stoneking M, Tishkoff S, Batzer M, Labuda D. Genetic structure of the ancestral population of modern humans. Journal of Molecular Evolution. 47: 146-55. PMID 9694663 DOI: 10.1007/PL00006371  1
1998 DeAngelis MM, Doucet JP, Drury S, Sherry ST, Robichaux MB, Den Z, Pelias MZ, Ditta GM, Keats BJ, Deininger PL, Batzer MA. Assembly of a high-resolution map of the Acadian Usher syndrome region and localization of the nuclear EF-hand acidic gene. Biochimica Et Biophysica Acta. 1407: 84-91. PMID 9639681 DOI: 10.1016/S0925-4439(98)00025-8  1
1998 Novick GE, Novick CC, Yunis J, Yunis E, Antunez de Mayolo P, Scheer WD, Deininger PL, Stoneking M, York DS, Batzer MA, Herrera RJ. Polymorphic Alu insertions and the Asian origin of Native American populations. Human Biology. 70: 23-39. PMID 9489232  1
1998 Harpending HC, Batzer M, Gurven M, Jorde LB, Rogers AR, Sherry ST. Genetic traces of ancient demography Proceedings of the National Academy of Sciences of the United States of America. 95: 1961-1967. PMID 9465125 DOI: 10.1073/pnas.95.4.1961  0.72
1998 Sherry ST, Batzer MA, Harpending HC. Modeling the genetic architecture of modern populations Modeling the genetic architecture of modern populations Modeling the Genetic Architecture of Modern Populations. 153-169.  1
1997 Zietkiewicz E, Yotova V, Jarnik M, Korab-Laskowska M, Kidd KK, Modiano D, Scozzari R, Stoneking M, Tishkoff S, Batzer M, Labuda D. Nuclear DNA diversity in worldwide distributed human populations. Gene. 205: 161-71. PMID 9461390 DOI: 10.1016/S0378-1119(97)00408-3  1
1997 Bouyge-Moreau I, Rondeau G, Avet-Loiseau H, André MT, Bézieau S, Chérel M, Saleün S, Cadoret E, Shaikh T, De Angelis MM, Arcot S, Batzer M, Moisan JP, Devilder MC. Construction of a 780-kb PAC, BAC, and cosmid contig encompassing the minimal critical deletion involved in B cell chronic lymphocytic leukemia at 13q14.3 Genomics. 46: 183-190. PMID 9417905 DOI: 10.1006/geno.1997.5008  1
1997 Sherry ST, Harpending HC, Batzer MA, Stoneking M. Alu evolution in human populations: Using the coalescent to estimate effective population size Genetics. 147: 1977-1982. PMID 9409852  1
1997 Stoneking M, Fontius JJ, Clifford SL, Soodyall H, Arcot SS, Saha N, Jenkins T, Tahir MA, Deininger PL, Batzer MA. Alu insertion polymorphisms and human evolution: evidence for a larger population size in Africa. Genome Research. 7: 1061-71. PMID 9371742  1
1997 Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL, Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutation Research. 382: 5-11. PMID 9360633 DOI: 10.1016/S1383-5726(97)00002-2  1
1997 Sherry ST, Batzer MA. Modeling human evolution - to tree or not to tree? Genome Research. 7: 947-949. PMID 9331363  1
1997 Shaikh TH, Roy AM, Kim J, Batzer MA, Deininger PL. cDNAs derived from primary and small cytoplasmic Alu (scAlu) transcripts. Journal of Molecular Biology. 271: 222-34. PMID 9268654 DOI: 10.1006/jmbi.1997.1161  1
1997 Batzer MA, Sherry ST, Deininger PL, Stoneking M. Alu repeats and human evolution. Response. Journal of Molecular Evolution. 45: 7-8. PMID 9211728 DOI: 10.1007/PL00006198  1
1997 Zucman-Rossi J, Batzer MA, Stoneking M, Delattre O, Thomas G. Interethnic polymorphism of EWS intron 6: Genome plasticity mediated by Alu retroposition and recombination Human Genetics. 99: 357-363. PMID 9050923 DOI: 10.1007/s004390050372  1
1996 Kass DH, Batzer MA, Deininger PL. Characterization and population diversity of interspersed repeat sequence variants (IRS-morphs). Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 39: 688-96. PMID 18469928  1
1996 Arcot SS, Adamson AW, Lamerdin JE, Kanagy B, Deininger PL, Carrano AV, Batzer MA. Alu fossil relics--distribution and insertion polymorphism. Genome Research. 6: 1084-92. PMID 8938432  1
1996 Knight A, Batzer MA, Stoneking M, Tiwari HK, Scheer WD, Herrera RJ, Deininger PL. DNA sequences of Alu elements indicate a recent replacement of the human autosomal genetic complement. Proceedings of the National Academy of Sciences of the United States of America. 93: 4360-4. PMID 8633071 DOI: 10.1073/pnas.93.9.4360  1
1996 Batzer MA, Deininger PL, Hellmann-Blumberg U, Jurka J, Labuda D, Rubin CM, Schmid CW, Zietkiewicz E, Zuckerkandl E. Standardized nomenclature for Alu repeats. Journal of Molecular Evolution. 42: 3-6. PMID 8576960 DOI: 10.1007/BF00163204  1
1996 Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM, Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, Scheer WD, Keats BJ, Deininger PL, et al. Genetic variation of recent Alu insertions in human populations. Journal of Molecular Evolution. 42: 22-9. PMID 8576959 DOI: 10.1007/BF00163207  1
1996 Novick GE, Batzer MA, Deininger PL, Herrera RJ. The mobile genetic element Alu in the human genome Bioscience. 46: 32-41.  1
1995 Novick GE, Novick CC, Yunis J, Yunis E, Martinez K, Duncan GG, Troup GM, Deininger PL, Stoneking M, Batzer MA. Polymorphic human specific Alu insertions as markers for human identification. Electrophoresis. 16: 1596-601. PMID 8582340 DOI: 10.1002/ELPS.11501601263  1
1995 Kass DH, Batzer MA. Inter-Alu polymerase chain reaction: Advancements and applications Analytical Biochemistry. 228: 185-193. PMID 8572294 DOI: 10.1006/abio.1995.1338  1
1995 Arcot SS, Wang Z, Weber JL, Deininger PL, Batzer MA. Alu repeats: a source for the genesis of primate microsatellites. Genomics. 29: 136-44. PMID 8530063 DOI: 10.1006/geno.1995.1224  1
1995 Kass DH, Batzer MA, Deininger PL. A new restriction-site polymorphism in exon 18 of the low density lipoprotein receptor (LDLR) gene. Human Genetics. 95: 363-4. PMID 7868136 DOI: 10.1007/BF00225211  1
1995 Kass DH, Batzer MA, Deininger PL. Gene conversion as a secondary mechanism of short interspersed element (SINE) evolution. Molecular and Cellular Biology. 15: 19-25. PMID 7799926  1
1995 Ashworth LK, Alegria-Hartman M, Burgin M, Devlin L, Carrano AV, Batzer MA. Assembly of high-resolution bacterial artificial chromosome, P1-derived artificial chromosome, and cosmid contigs Analytical Biochemistry. 224: 564-571. PMID 7733459 DOI: 10.1006/abio.1995.1088  1
1995 Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. Journal of Molecular Biology. 247: 418-27. PMID 7714898 DOI: 10.1006/jmbi.1994.0150  1
1995 Piontek K, Müller HW, Fischer U, Götten E, Batzer MA, Meltzer PS, Trent JM, Meese E. Generation and characterization of a human chromosome 6-specific hncDNA library from a somatic cell hybrid Cytogenetic and Genome Research. 69: 273-278. PMID 7698027 DOI: 10.1159/000133978  1
1995 Arcot SS, Fontius JJ, Deininger PL, Batzer MA. Identification and analysis of a 'young' polymorphic Alu element. Biochimica Et Biophysica Acta. 1263: 99-102. PMID 7632743 DOI: 10.1016/0167-4781(95)00080-Z  1
1995 Arcot SS, Shaikh TH, Kim J, Bennett L, Alegria-Hartman M, Nelson DO, Deininger PL, Batzer MA. Sequence diversity and chromosomal distribution of "young" Alu repeats. Gene. 163: 273-8. PMID 7590280 DOI: 10.1016/0378-1119(95)00317-Y  1
1995 Ashworth LK, Batzer MA, Brandriff B, Branscomb E, de Jong P, Garcia E, Garnes JA, Gordon LA, Lamerdin JE, Lennon G, Mohrenweiser H, Olsen AS, Slezak T, Carrano AV. An integrated metric physical map of human chromosome 19. Nature Genetics. 11: 422-7. PMID 7493023 DOI: 10.1038/ng1295-422  1
1994 Rouquier S, Batzer MA, Giorgi D. Application of bacterial artificial chromosomes to the generation of contiguous physical maps: A pilot study of human ryanodine receptor gene (RYR1) region Analytical Biochemistry. 217: 205-209. PMID 8203748 DOI: 10.1006/abio.1994.1110  1
1994 Ioannou PA, Amemiya CT, Garnes J, Kroisel PM, Shizuya H, Chen C, Batzer MA, De Jong PJ. A new bacteriophage P1-derived vector for the propagation of large human DNA fragments Nature Genetics. 6: 84-89. PMID 8136839 DOI: 10.1038/ng0194-84  1
1994 Wong BS, Dejong PJ, Batzer MA. A Device to Facilitate the Manual Manipulation of Arrayed Libraries Analytical Biochemistry. 216: 237-239. PMID 8135361 DOI: 10.1006/abio.1994.1034  1
1994 Batzer MA, Stoneking M, Alegria-Hartman M, Bazan H, Kass DH, Shaikh TH, Novick GE, Ioannou PA, Scheer WD, Herrera RJ, Deininger PL. African origin of human-specific polymorphic Alu insertions Proceedings of the National Academy of Sciences of the United States of America. 91: 12288-12292. PMID 7991620 DOI: 10.1073/pnas.91.25.12288  1
1994 Batzer MA, Alegria-Hartman M, Deininger PL. A consensus Alu repeat probe for physical mapping. Genetic Analysis, Techniques and Applications. 11: 34-8. PMID 7917498 DOI: 10.1016/1050-3862(94)90058-2  1
1994 Kass DH, Aleman C, Batzer MA, Deininger PL. Identification of a human specific Alu insertion in the factor XIIIB gene. Genetica. 94: 1-8. PMID 7729692 DOI: 10.1007/BF01429214  1
1993 Mahadevan MS, Amemiya C, Jansen G, Sabourin L, Baird S, Neville CE, Wormskamp N, Segers B, Batzer M, Lamerdin J, De Jong P, Wieringa B, Korneluk RG. Structure and genomic sequence of the myotonic dystrophy (DM kinase) gene Human Molecular Genetics. 2: 299-304. PMID 8499920 DOI: 10.1093/hmg/2.3.299  1
1993 Novick GE, Gonzalez T, Garrison J, Novick CC, Batzer MA, Deininger PL, Herrera RJ. The use of polymorphic Alu insertions in human DNA fingerprinting. Exs. 67: 283-91. PMID 8400699 DOI: 10.1007/978-3-0348-8583-6_26  1
1993 Batzer MA, Schmid CW, Deininger PL. Evolutionary analyses of repetitive DNA sequences. Methods in Enzymology. 224: 213-32. PMID 8264388 DOI: 10.1016/0076-6879(93)24017-O  1
1993 Flores BM, Batzer MA, Stein MA, Petersen C, Diedrich DL, Torian BE. Structural analysis and demonstration of the 29 kDa antigen of pathogenic Entamoeba histolytica as the major accessible free thiol-containing surface protein Molecular Microbiology. 7: 755-763. PMID 7682280 DOI: 10.1111/j.1365-2958.1993.tb01166.x  1
1993 Deininger PL, Batzer MA. Evolution of retroposons Evol.Biol.. 27: 157-196.  1
1992 Reed SL, Flores BM, Batzer MA, Stein MA, Stroeher VL, Carlton JE, Diedrich DL, Torian BE. Molecular and cellular characterization of the 29-kilodalton peripheral membrane protein of Entamoeba histolytica: differentiation between pathogenic and nonpathogenic isolates. Infection and Immunity. 60: 542-9. PMID 1730488 DOI: 10.1128/IAI.60.2.542-549.1992  1
1992 Deininger PL, Batzer MA, Hutchison CA, Edgell MH. Master genes in mammalian repetitive DNA amplification. Trends in Genetics : Tig. 8: 307-11. PMID 1365396 DOI: 10.1016/0168-9525(92)90262-3  1
1991 Batzer MA, Carlton JE, Deininger PL. Enhanced evolutionary PCR using oligonucleotides with inosine at the 3'-terminus. Nucleic Acids Research. 19: 5081. PMID 1923780 DOI: 10.1093/nar/19.18.5081  1
1991 Batzer MA, Deininger PL. A human-specific subfamily of Alu sequences. Genomics. 9: 481-7. PMID 1851725 DOI: 10.1016/0888-7543(91)90414-A  1
1991 Batzer MA, Gudi VA, Mena JC, Foltz DW, Herrera RJ, Deininger PL. Amplification dynamics of human-specific (HS) Alu family members. Nucleic Acids Research. 19: 3619-23. PMID 1649453 DOI: 10.1093/nar/19.13.3619  1
1990 Batzer MA, Kilroy GE, Richard PE, Shaikh TH, Desselle TD, Hoppens CL, Deininger PL. Structure and variability of recently inserted Alu family members. Nucleic Acids Research. 18: 6793-8. PMID 2175877 DOI: 10.1093/NAR/18.23.6793  1
1988 Batzer MA, Tedeschi B, Fossett NG, Tucker A, Kilroy G, Arbour P, Lee WR. Spectra of molecular changes induced in DNA of Drosophila spermatozoa by 1-ethyl-1-nitrosourea and X-rays. Mutation Research. 199: 255-68. PMID 3129655 DOI: 10.1016/0027-5107(88)90253-9  1
1988 Batzer MA, Desselle TD, Brennan MD, Lee WR, Tedeschi B. Molecular analysis of alcohol dehydrogenase electromorphs in wild type and transformed Drosophila melanogaster. Biochemical and Biophysical Research Communications. 150: 655-64. PMID 3124838 DOI: 10.1016/0006-291X(88)90442-1  1
1988 LoMonaco MB, Batzer MA, Tedeschi B, Chang SH, Lee WR. Molecular analysis of Drosophila melanogaster AdhnLA405 confirms reliability of DNA-sequencing methodology. Mutation Research. 207: 53-6. PMID 3123925 DOI: 10.1016/0165-7992(88)90041-3  1
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