Michael Hammer, PhD - Publications

Affiliations: 
University of Arizona, Tucson, AZ 

117 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Marshall IR, Brauer CJ, Wedderburn SD, Whiterod NS, Hammer MP, Barnes TC, Attard CRM, Möller LM, Beheregaray LB. Longitudinal monitoring of neutral and adaptive genomic diversity in a reintroduction. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 35023224 DOI: 10.1111/cobi.13889  0.369
2018 Hallmark B, Karafet TM, Hsieh P, Osipova LP, Watkins JC, Hammer MF. Genomic Evidence of Local Adaptation to Climate and Diet in Indigenous Siberians. Molecular Biology and Evolution. PMID 30428071 DOI: 10.1093/Molbev/Msy211  0.334
2018 Woerner AE, Veeramah KR, Watkins JC, Hammer MF. The role of phylogenetically conserved elements in shaping patterns of human genomic diversity. Molecular Biology and Evolution. PMID 30113695 DOI: 10.1093/Molbev/Msy145  0.754
2018 Quinto-Cortés CD, Woerner AE, Watkins JC, Hammer MF. Modeling SNP array ascertainment with Approximate Bayesian Computation for demographic inference. Scientific Reports. 8: 10209. PMID 29977040 DOI: 10.1038/S41598-018-28539-Y  0.713
2017 Hsieh P, Hallmark B, Watkins J, Karafet TM, Osipova LP, Gutenkunst RN, Hammer MF. Exome Sequencing Provides Evidence of Polygenic Adaptation to a Fat-Rich Animal Diet in Indigenous Siberian Populations. Molecular Biology and Evolution. PMID 28962010 DOI: 10.1093/Molbev/Msx226  0.311
2016 Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Calò CM, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, ... ... Hammer M, et al. Corrigendum: Geographic population structure analysis of worldwide human populations infers their biogeographical origins. Nature Communications. 7: 13468. PMID 27796289 DOI: 10.1038/Ncomms13468  0.336
2016 Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, ... ... Hammer MF, et al. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature. PMID 27654912 DOI: 10.1038/Nature18964  0.725
2016 Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF. Corrigendum: Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies. Genome Research. 26: 717.1. PMID 27197244 DOI: 10.1101/Gr.206524.116  0.669
2016 Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF. Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies. Genome Research. PMID 26888264 DOI: 10.1101/Gr.196634.115  0.748
2016 Hsieh P, Veeramah KR, Lachance J, Tishkoff SA, Wall JD, Hammer MF, Gutenkunst RN. Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection. Genome Research. PMID 26888263 DOI: 10.1101/Gr.192971.115  0.364
2015 Stevison LS, Woerner AE, Kidd JM, Kelley JL, Veeramah KR, McManus KF, Bustamante CD, Hammer MF, Wall JD. The Time-Scale Of Recombination Rate Evolution In Great Apes. Molecular Biology and Evolution. PMID 26671457 DOI: 10.1093/Molbev/Msv331  0.721
2015 Karafet TM, Bulayeva KB, Nichols J, Bulayev OA, Gurgenova F, Omarova J, Yepiskoposyan L, Savina OV, Rodrigue BH, Hammer MF. Coevolution of genes and languages and high levels of population structure among the highland populations of Daghestan. Journal of Human Genetics. PMID 26607180 DOI: 10.1038/Jhg.2015.132  0.434
2015 Austin CM, Tan MH, Croft LJ, Hammer MP, Gan HM. Whole Genome Sequencing of the Asian Arowana (Scleropages formosus) Provides Insights into the Evolution of Ray-Finned Fishes. Genome Biology and Evolution. 7: 2885-95. PMID 26446539 DOI: 10.1093/gbe/evv186  0.311
2015 Sudmant PH, Mallick S, Nelson BJ, Hormozdiari F, Krumm N, Huddleston J, Coe BP, Baker C, Nordenfelt S, Bamshad M, Jorde LB, Posukh OL, Sahakyan H, Watkins WS, Yepiskoposyan L, ... ... Hammer M, et al. Global diversity, population stratification, and selection of human copy number variation. Science (New York, N.Y.). PMID 26249230 DOI: 10.1126/Science.Aab3761  0.701
2015 Bracamonte SE, Smith S, Hammer M, Pavey SA, Sunnucks P, Beheregaray LB. Characterization of MHC class IIB for four endangered Australian freshwater fishes obtained from ecologically divergent populations. Fish & Shellfish Immunology. PMID 26093210 DOI: 10.1016/j.fsi.2015.06.009  0.317
2015 Nam K, Munch K, Hobolth A, Dutheil JY, Veeramah KR, Woerner AE, Hammer MF, Mailund T, Schierup MH. Extreme selective sweeps independently targeted the X chromosomes of the great apes. Proceedings of the National Academy of Sciences of the United States of America. 112: 6413-8. PMID 25941379 DOI: 10.1073/Pnas.1419306112  0.726
2015 Sanderson J, Sudoyo H, Karafet TM, Hammer MF, Cox MP. Reconstructing Past Admixture Processes from Local Genomic Ancestry Using Wavelet Transformation. Genetics. 200: 469-81. PMID 25852078 DOI: 10.1534/genetics.115.176842  0.358
2015 Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG, Rootsi S, Ilumäe AM, Mägi R, Mitt M, Pagani L, Puurand T, Faltyskova Z, Clemente F, Cardona A, ... ... Hammer MF, et al. A recent bottleneck of Y chromosome diversity coincides with a global change in culture. Genome Research. 25: 459-66. PMID 25770088 DOI: 10.1101/Gr.186684.114  0.759
2015 Veeramah KR, Woerner AE, Johnstone L, Gut I, Gut M, Marques-Bonet T, Carbone L, Wall JD, Hammer MF. Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate bayesian computation approach. Genetics. 200: 295-308. PMID 25769979 DOI: 10.1534/Genetics.115.174425  0.732
2015 McManus KF, Kelley JL, Song S, Veeramah KR, Woerner AE, Stevison LS, Ryder OA, Ape Genome Project G, Kidd JM, Wall JD, Bustamante CD, Hammer MF. Inference of gorilla demographic and selective history from whole-genome sequence data. Molecular Biology and Evolution. 32: 600-12. PMID 25534031 DOI: 10.1093/Molbev/Msu394  0.728
2015 Mendez FL, Veeramah KR, Thomas MG, Karafet TM, Hammer MF. Reply to 'The 'extremely ancient' chromosome that isn't' by Elhaik et al. European Journal of Human Genetics : Ejhg. 23: 564-7. PMID 25315660 DOI: 10.1038/Ejhg.2014.148  0.649
2015 Karafet TM, Mendez FL, Sudoyo H, Lansing JS, Hammer MF. Improved phylogenetic resolution and rapid diversification of Y-chromosome haplogroup K-M526 in Southeast Asia. European Journal of Human Genetics : Ejhg. 23: 369-73. PMID 24896152 DOI: 10.1038/Ejhg.2014.106  0.662
2015 Hammer MP, Goodman TS, Adams M, Faulks LF, Unmack PJ, Whiterod NS, Walker KF. Regional extinction, rediscovery and rescue of a freshwater fish from a highly modified environment: The need for rapid response Biological Conservation. 192: 91-100. DOI: 10.1016/J.Biocon.2015.08.041  0.321
2014 Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, ... ... Hammer M, et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature. 513: 409-13. PMID 25230663 DOI: 10.1038/Nature13673  0.66
2014 Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, ... ... Hammer MF, et al. Gibbon genome and the fast karyotype evolution of small apes. Nature. 513: 195-201. PMID 25209798 DOI: 10.1038/Nature13679  0.8
2014 Tumonggor MK, Karafet TM, Downey S, Lansing JS, Norquest P, Sudoyo H, Hammer MF, Cox MP. Isolation, contact and social behavior shaped genetic diversity in West Timor. Journal of Human Genetics. 59: 494-503. PMID 25078354 DOI: 10.1038/Jhg.2014.62  0.365
2014 Veeramah KR, Gutenkunst RN, Woerner AE, Watkins JC, Hammer MF. Evidence for increased levels of positive and negative selection on the X chromosome versus autosomes in humans. Molecular Biology and Evolution. 31: 2267-82. PMID 24830675 DOI: 10.1093/Molbev/Msu166  0.705
2014 Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Maria Calò C, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, ... ... Hammer M, et al. Geographic population structure analysis of worldwide human populations infers their biogeographical origins. Nature Communications. 5: 3513. PMID 24781250 DOI: 10.1038/Ncomms4513  0.433
2014 Miller AD, Sweeney OF, Whiterod NS, Van Rooyen AR, Hammer M, Weeks AR. Critically low levels of genetic diversity in fragmented populations of the endangered Glenelg spiny freshwater crayfish Euastacus bispinosus Endangered Species Research. 25: 43-55. DOI: 10.3354/Esr00609  0.386
2013 Behar DM, Metspalu M, Baran Y, Kopelman NM, Yunusbayev B, Gladstein A, Tzur S, Sahakyan H, Bahmanimehr A, Yepiskoposyan L, Tambets K, Khusnutdinova EK, Kushniarevich A, Balanovsky O, Balanovsky E, ... ... Hammer MF, et al. No evidence from genome-wide data of a Khazar origin for the Ashkenazi Jews. Human Biology. 85: 859-900. PMID 25079123 DOI: 10.3378/027.085.0604  0.422
2013 Brauer CJ, Unmack PJ, Hammer MP, Adams M, Beheregaray LB. Catchment-scale conservation units identified for the threatened Yarra pygmy perch (Nannoperca obscura) in highly modified river systems. Plos One. 8: e82953. PMID 24349405 DOI: 10.1371/Journal.Pone.0082953  0.342
2013 Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, ... ... Hammer MF, et al. Great ape genetic diversity and population history. Nature. 499: 471-5. PMID 23823723 DOI: 10.1038/Nature12228  0.739
2013 Mendez FL, Krahn T, Schrack B, Krahn AM, Veeramah KR, Woerner AE, Fomine FL, Bradman N, Thomas MG, Karafet TM, Hammer MF. An African American paternal lineage adds an extremely ancient root to the human Y chromosome phylogenetic tree. American Journal of Human Genetics. 92: 454-9. PMID 23453668 DOI: 10.1016/J.Ajhg.2013.02.002  0.825
2013 Wall JD, Yang MA, Jay F, Kim SK, Durand EY, Stevison LS, Gignoux C, Woerner A, Hammer MF, Slatkin M. Higher levels of neanderthal ancestry in East Asians than in Europeans. Genetics. 194: 199-209. PMID 23410836 DOI: 10.1534/Genetics.112.148213  0.756
2013 Unmack PJ, Hammer MP, Adams M, Johnson JB, Dowling TE. The role of continental shelf width in determining freshwater phylogeographic patterns in south-eastern Australian pygmy perches (Teleostei: Percichthyidae). Molecular Ecology. 22: 1683-99. PMID 23398527 DOI: 10.1111/Mec.12204  0.32
2013 Tumonggor MK, Karafet TM, Hallmark B, Lansing JS, Sudoyo H, Hammer MF, Cox MP. The Indonesian archipelago: an ancient genetic highway linking Asia and the Pacific. Journal of Human Genetics. 58: 165-73. PMID 23344321 DOI: 10.1038/Jhg.2012.154  0.442
2013 Mendez FL, Watkins JC, Hammer MF. Neandertal origin of genetic variation at the cluster of OAS immunity genes. Molecular Biology and Evolution. 30: 798-801. PMID 23315957 DOI: 10.1093/Molbev/Mst004  0.748
2012 Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, ... ... Hammer MF, et al. A high-coverage genome sequence from an archaic Denisovan individual. Science (New York, N.Y.). 338: 222-6. PMID 22936568 DOI: 10.1126/Science.1224344  0.59
2012 Mendez FL, Watkins JC, Hammer MF. A haplotype at STAT2 Introgressed from neanderthals and serves as a candidate of positive selection in Papua New Guinea. American Journal of Human Genetics. 91: 265-74. PMID 22883142 DOI: 10.1016/J.Ajhg.2012.06.015  0.729
2012 Mendez FL, Watkins JC, Hammer MF. Global genetic variation at OAS1 provides evidence of archaic admixture in Melanesian populations. Molecular Biology and Evolution. 29: 1513-20. PMID 22319157 DOI: 10.1093/Molbev/Msr301  0.765
2012 Veeramah KR, Wegmann D, Woerner A, Mendez FL, Watkins JC, Destro-Bisol G, Soodyall H, Louie L, Hammer MF. An early divergence of KhoeSan ancestors from those of other modern humans is supported by an ABC-based analysis of autosomal resequencing data. Molecular Biology and Evolution. 29: 617-30. PMID 21890477 DOI: 10.1093/Molbev/Msr212  0.797
2012 Velez C, Palamara PF, Guevara-Aguirre J, Hao L, Karafet T, Guevara-Aguirre M, Pearlman A, Oddoux C, Hammer M, Burns E, Pe'Er I, Atzmon G, Ostrer H. The impact of Converso Jews on the genomes of modern Latin Americans Human Genetics. 131: 251-263. PMID 21789512 DOI: 10.1007/S00439-011-1072-Z  0.475
2011 Hammer MF, Woerner AE, Mendez FL, Watkins JC, Wall JD. Genetic evidence for archaic admixture in Africa. Proceedings of the National Academy of Sciences of the United States of America. 108: 15123-8. PMID 21896735 DOI: 10.1073/Pnas.1109300108  0.839
2011 Mendez FL, Karafet TM, Krahn T, Ostrer H, Soodyall H, Hammer MF. Increased resolution of Y chromosome haplogroup T defines relationships among populations of the Near East, Europe, and Africa. Human Biology. 83: 39-53. PMID 21453003 DOI: 10.3378/027.083.0103  0.722
2010 Hammer MF, Woerner AE, Mendez FL, Watkins JC, Cox MP, Wall JD. The ratio of human X chromosome to autosome diversity is positively correlated with genetic distance from genes. Nature Genetics. 42: 830-1. PMID 20802480 DOI: 10.1038/Ng.651  0.815
2010 Bryc K, Velez C, Karafet T, Moreno-Estrada A, Reynolds A, Auton A, Hammer M, Bustamante CD, Ostrer H. Colloquium paper: genome-wide patterns of population structure and admixture among Hispanic/Latino populations. Proceedings of the National Academy of Sciences of the United States of America. 107: 8954-61. PMID 20445096 DOI: 10.1073/Pnas.0914618107  0.459
2010 Karafet TM, Hallmark B, Cox MP, Sudoyo H, Downey S, Lansing JS, Hammer MF. Major east-west division underlies y chromosome stratification across Indonesia Molecular Biology and Evolution. 27: 1833-1844. PMID 20207712 DOI: 10.1093/Molbev/Msq063  0.372
2010 Cox MP, Karafet TM, Lansing JS, Sudoyo H, Hammer MF. Autosomal and X-linked single nucleotide polymorphisms reveal a steep Asian-Melanesian ancestry cline in eastern Indonesia and a sex bias in admixture rates Proceedings of the Royal Society B: Biological Sciences. 277: 1589-1596. PMID 20106848 DOI: 10.1098/rspb.2009.2041  0.426
2009 Hammer MF, Behar DM, Karafet TM, Mendez FL, Hallmark B, Erez T, Zhivotovsky LA, Rosset S, Skorecki K. Extended Y chromosome haplotypes resolve multiple and unique lineages of the Jewish priesthood. Human Genetics. 126: 707-17. PMID 19669163 DOI: 10.1007/S00439-009-0727-5  0.741
2009 Cox MP, Morales DA, Woerner AE, Sozanski J, Wall JD, Hammer MF. Autosomal resequence data reveal Late Stone Age signals of population expansion in sub-Saharan African foraging and farming populations. Plos One. 4: e6366. PMID 19641603 DOI: 10.1371/journal.pone.0006366  0.711
2009 Hammer MF, Behar DM, Karafet TM, Mendez FL, Hallmark B, Erez T, Zhivotovsky LA, Rosset S, Skorecki K. Response Human Genetics. 126: 725-726. DOI: 10.1007/s00439-009-0747-1  0.57
2008 Cox MP, Woerner AE, Wall JD, Hammer MF. Intergenic DNA sequences from the human X chromosome reveal high rates of global gene flow. Bmc Genetics. 9: 76. PMID 19038041 DOI: 10.1186/1471-2156-9-76  0.755
2008 Hammer MF, Mendez FL, Cox MP, Woerner AE, Wall JD. Sex-biased evolutionary forces shape genomic patterns of human diversity. Plos Genetics. 4: e1000202. PMID 18818765 DOI: 10.1371/Journal.Pgen.1000202  0.846
2008 Lansing JS, Watkins JC, Hallmark B, Cox MP, Karafet TM, Sudoyo H, Hammer MF. Male dominance rarely skews the frequency distribution of Y chromosome haplotypes in human populations. Proceedings of the National Academy of Sciences of the United States of America. 105: 11645-50. PMID 18703660 DOI: 10.1073/Pnas.0710158105  0.343
2008 Malhi RS, Gonzalez-Oliver A, Schroeder KB, Kemp BM, Greenberg JA, Dobrowski SZ, Smith DG, Resendez A, Karafet T, Hammer M, Zegura S, Brovko T. Distribution of Y chromosomes among native North Americans: a study of Athapaskan population history. American Journal of Physical Anthropology. 137: 412-24. PMID 18618732 DOI: 10.1002/Ajpa.20883  0.549
2008 Schlecht J, Kaplan ME, Barnard K, Karafet T, Hammer MF, Merchant NC. Machine-learning approaches for classifying haplogroup from Y chromosome STR data. Plos Computational Biology. 4: e1000093. PMID 18551166 DOI: 10.1371/Journal.Pcbi.1000093  0.314
2008 Wall JD, Cox MP, Mendez FL, Woerner A, Severson T, Hammer MF. A novel DNA sequence database for analyzing human demographic history. Genome Research. 18: 1354-61. PMID 18493019 DOI: 10.1101/Gr.075630.107  0.836
2008 Shlush LI, Behar DM, Yudkovsky G, Templeton A, Hadid Y, Basis F, Hammer M, Itzkovitz S, Skorecki K. The Druze: a population genetic refugium of the Near East. Plos One. 3: e2105. PMID 18461126 DOI: 10.1371/Journal.Pone.0002105  0.501
2008 Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Research. 18: 830-8. PMID 18385274 DOI: 10.1101/Gr.7172008  0.726
2008 Cox MP, Mendez FL, Karafet TM, Pilkington MM, Kingan SB, Destro-Bisol G, Strassmann BI, Hammer MF. Testing for archaic hominin admixture on the X chromosome: model likelihoods for the modern human RRM2P4 region from summaries of genealogical topology under the structured coalescent. Genetics. 178: 427-37. PMID 18202385 DOI: 10.1534/Genetics.107.080432  0.805
2008 Pilkington MM, Wilder JA, Mendez FL, Cox MP, Woerner A, Angui T, Kingan S, Mobasher Z, Batini C, Destro-Bisol G, Soodyall H, Strassmann BI, Hammer MF. Contrasting signatures of population growth for mitochondrial DNA and Y chromosomes among human populations in Africa. Molecular Biology and Evolution. 25: 517-25. PMID 18093995 DOI: 10.1093/Molbev/Msm279  0.821
2008 Walsh B, Redd AJ, Hammer MF. Joint match probabilities for Y chromosomal and autosomal markers. Forensic Science International. 174: 234-8. PMID 17449208 DOI: 10.1016/J.Forsciint.2007.03.014  0.415
2007 Cox MP, Redd AJ, Karafet TM, Ponder CA, Lansing JS, Sudoyo H, Hammer MF. A Polynesian motif on the Y chromosome: Population structure in remote Oceania Human Biology. 79: 525-535. PMID 18478968 DOI: 10.1353/Hub.2008.0004  0.348
2007 Garrigan D, Kingan SB, Pilkington MM, Wilder JA, Cox MP, Soodyall H, Strassmann B, Destro-Bisol G, de Knijff P, Novelletto A, Friedlaender J, Hammer MF. Inferring human population sizes, divergence times and rates of gene flow from mitochondrial, X and Y chromosome resequencing data. Genetics. 177: 2195-207. PMID 18073427 DOI: 10.1534/Genetics.107.077495  0.801
2007 Woerner AE, Cox MP, Hammer MF. Recombination-filtered genomic datasets by information maximization. Bioinformatics (Oxford, England). 23: 1851-3. PMID 17519249 DOI: 10.1093/bioinformatics/btm253  0.669
2007 Chaix R, Quintana-Murci L, Hegay T, Hammer MF, Mobasher Z, Austerlitz F, Heyer E. From social to genetic structures in central Asia. Current Biology : Cb. 17: 43-8. PMID 17208185 DOI: 10.1016/J.Cub.2006.10.058  0.304
2007 Wilder JA, Hammer MF. Extraordinary Population Structure among the Baining of New Britain Population Genetics, Linguistics, and Culture History in the Southwest Pacific. DOI: 10.1093/acprof:oso/9780195300307.003.0013  0.641
2007 Scheinfeldt LB, Friedlaender FR, Friedlaender JS, Latham K, Koki G, Karafet T, Hammer M, Lorenz J. Y Chromosome Variation in Northern Island Melanesia Population Genetics, Linguistics, and Culture History in the Southwest Pacific. DOI: 10.1093/acprof:oso/9780195300307.003.0005  0.349
2006 Garrigan D, Hammer MF. Reconstructing human origins in the genomic era. Nature Reviews. Genetics. 7: 669-80. PMID 16921345 DOI: 10.1038/Nrg1941  0.449
2006 Scheinfeldt L, Friedlaender F, Friedlaender J, Latham K, Koki G, Karafet T, Hammer M, Lorenz J. Unexpected NRY chromosome variation in Northern Island Melanesia. Molecular Biology and Evolution. 23: 1628-41. PMID 16754639 DOI: 10.1093/Molbev/Msl028  0.444
2006 Redd AJ, Chamberlain VF, Kearney VF, Stover D, Karafet T, Calderon K, Walsh B, Hammer MF. Genetic structure among 38 populations from the United States based on 11 U.S. core Y chromosome STRs. Journal of Forensic Sciences. 51: 580-5. PMID 16696705 DOI: 10.1111/J.1556-4029.2006.00113.X  0.358
2006 Hammer MF, Chamberlain VF, Kearney VF, Stover D, Zhang G, Karafet T, Walsh B, Redd AJ. Population structure of Y chromosome SNP haplogroups in the United States and forensic implications for constructing Y chromosome STR databases. Forensic Science International. 164: 45-55. PMID 16337103 DOI: 10.1016/J.Forsciint.2005.11.013  0.468
2006 Hammer MF, Karafet TM, Park H, Omoto K, Harihara S, Stoneking M, Horai S. Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. Journal of Human Genetics. 51: 47-58. PMID 16328082 DOI: 10.1007/S10038-005-0322-0  0.648
2005 Wood ET, Stover DA, Slatkin M, Nachman MW, Hammer MF. The beta -globin recombinational hotspot reduces the effects of strong selection around HbC, a recently arisen mutation providing resistance to malaria. American Journal of Human Genetics. 77: 637-42. PMID 16175509 DOI: 10.1086/491748  0.614
2005 Karafet TM, Lansing JS, Redd AJ, Reznikova S, Watkins JC, Surata SP, Arthawiguna WA, Mayer L, Bamshad M, Jorde LB, Hammer MF. Balinese Y-chromosome perspective on the peopling of Indonesia: genetic contributions from pre-neolithic hunter-gatherers, Austronesian farmers, and Indian traders. Human Biology. 77: 93-114. PMID 16114819 DOI: 10.1353/Hub.2005.0030  0.403
2005 Saunders MA, Slatkin M, Garner C, Hammer MF, Nachman MW. The extent of linkage disequilibrium caused by selection on G6PD in humans. Genetics. 171: 1219-29. PMID 16020776 DOI: 10.1534/Genetics.105.048140  0.398
2005 Garrigan D, Mobasher Z, Kingan SB, Wilder JA, Hammer MF. Deep haplotype divergence and long-range linkage disequilibrium at xp21.1 provide evidence that humans descend from a structured ancestral population. Genetics. 170: 1849-56. PMID 15937130 DOI: 10.1534/Genetics.105.041095  0.76
2005 Wood ET, Stover DA, Ehret C, Destro-Bisol G, Spedini G, McLeod H, Louie L, Bamshad M, Strassmann BI, Soodyall H, Hammer MF. Contrasting patterns of Y chromosome and mtDNA variation in Africa: evidence for sex-biased demographic processes. European Journal of Human Genetics : Ejhg. 13: 867-76. PMID 15856073 DOI: 10.1038/Sj.Ejhg.5201408  0.686
2005 Garrigan D, Mobasher Z, Severson T, Wilder JA, Hammer MF. Evidence for archaic Asian ancestry on the human X chromosome. Molecular Biology and Evolution. 22: 189-92. PMID 15483323 DOI: 10.1093/Molbev/Msi013  0.744
2004 Wilder JA, Hammer MF. European ACP1*C allele has recessive deleterious effects on early life viability. Human Biology. 76: 817-35. PMID 15974295 DOI: 10.1353/Hub.2005.0023  0.651
2004 Chaix R, Austerlitz F, Khegay T, Jacquesson S, Hammer MF, Heyer E, Quintana-Murci L. The genetic or mythical ancestry of descent groups: lessons from the Y chromosome. American Journal of Human Genetics. 75: 1113-6. PMID 15467979 DOI: 10.1086/425938  0.308
2004 Wilder JA, Kingan SB, Mobasher Z, Pilkington MM, Hammer MF. Global patterns of human mitochondrial DNA and Y-chromosome structure are not influenced by higher migration rates of females versus males. Nature Genetics. 36: 1122-5. PMID 15378061 DOI: 10.1038/Ng1428  0.796
2004 Hammer MF, Garrigan D, Wood E, Wilder JA, Mobasher Z, Bigham A, Krenz JG, Nachman MW. Heterogeneous patterns of variation among multiple human x-linked Loci: the possible role of diversity-reducing selection in non-africans. Genetics. 167: 1841-53. PMID 15342522 DOI: 10.1534/Genetics.103.025361  0.805
2004 Wilder JA, Mobasher Z, Hammer MF. Genetic evidence for unequal effective population sizes of human females and males. Molecular Biology and Evolution. 21: 2047-57. PMID 15317874 DOI: 10.1093/Molbev/Msh214  0.74
2004 Nachman MW, D'Agostino SL, Tillquist CR, Mobasher Z, Hammer MF. Nucleotide variation at Msn and Alas2, two genes flanking the centromere of the X chromosome in humans. Genetics. 167: 423-37. PMID 15166166 DOI: 10.1534/Genetics.167.1.423  0.833
2004 Quintana-Murci L, Bigham A, Rouba H, Barakat A, McElreavey K, Hammer M. Y-chromosomal STR haplotypes in Berber and Arabic-speaking populations from Morocco. Forensic Science International. 140: 113-5. PMID 15013173 DOI: 10.1016/J.Forsciint.2003.11.006  0.388
2004 Behar DM, Garrigan D, Kaplan ME, Mobasher Z, Rosengarten D, Karafet TM, Quintana-Murci L, Ostrer H, Skorecki K, Hammer MF. Contrasting patterns of Y chromosome variation in Ashkenazi Jewish and host non-Jewish European populations. Human Genetics. 114: 354-65. PMID 14740294 DOI: 10.1007/S00439-003-1073-7  0.459
2004 Behar DM, Hammer MF, Garrigan D, Villems R, Bonne-Tamir B, Richards M, Gurwitz D, Rosengarten D, Kaplan M, Della Pergola S, Quintana-Murci L, Skorecki K. MtDNA evidence for a genetic bottleneck in the early history of the Ashkenazi Jewish population. European Journal of Human Genetics : Ejhg. 12: 355-64. PMID 14722586 DOI: 10.1038/Sj.Ejhg.5201156  0.437
2004 Zegura SL, Karafet TM, Zhivotovsky LA, Hammer MF. High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Molecular Biology and Evolution. 21: 164-75. PMID 14595095 DOI: 10.1093/Molbev/Msh009  0.403
2003 Jin HJ, Kwak KD, Hammer MF, Nakahori Y, Shinka T, Lee JW, Jin F, Jia X, Tyler-Smith C, Kim W. Y-chromosomal DNA haplogroups and their implications for the dual origins of the Koreans. Human Genetics. 114: 27-35. PMID 14505036 DOI: 10.1007/S00439-003-1019-0  0.391
2003 Behar DM, Thomas MG, Skorecki K, Hammer MF, Bulygina E, Rosengarten D, Jones AL, Held K, Moses V, Goldstein D, Bradman N, Weale ME. Multiple origins of Ashkenazi Levites: Y chromosome evidence for both Near Eastern and European ancestries. American Journal of Human Genetics. 73: 768-79. PMID 13680527 DOI: 10.1086/378506  0.35
2003 Hammer MF, Blackmer F, Garrigan D, Nachman MW, Wilder JA. Human population structure and its effects on sampling Y chromosome sequence variation. Genetics. 164: 1495-509. PMID 12930755  0.73
2003 Bonné-Tamir B, Korostishevsky M, Redd AJ, Pel-Or Y, Kaplan ME, Hammer MF. Maternal and paternal lineages of the Samaritan isolate: Mutation rates and time to most recent common male ancestor Annals of Human Genetics. 67: 153-164. PMID 12675690 DOI: 10.1046/j.1469-1809.2003.00024.x  0.31
2003 Yi Z, Garrison N, Cohen-Barak O, Karafet TM, King RA, Erickson RP, Hammer MF, Brilliant MH. A 122.5-kilobase deletion of the P gene underlies the high prevalence of oculocutaneous albinism type 2 in the Navajo population. American Journal of Human Genetics. 72: 62-72. PMID 12469324 DOI: 10.1086/345380  0.307
2002 Karafet TM, Osipova LP, Gubina MA, Posukh OL, Zegura SL, Hammer MF. High levels of Y-chromosome differentiation among native Siberian populations and the genetic signature of a boreal hunter-gatherer way of life. Human Biology. 74: 761-89. PMID 12617488 DOI: 10.1353/Hub.2003.0006  0.47
2002 Saunders MA, Hammer MF, Nachman MW. Nucleotide variability at G6pd and the signature of malarial selection in humans. Genetics. 162: 1849-61. PMID 12524354  0.423
2002 Redd AJ, Agellon AB, Kearney VA, Contreras VA, Karafet T, Park H, de Knijff P, Butler JM, Hammer MF. Forensic value of 14 novel STRs on the human Y chromosome. Forensic Science International. 130: 97-111. PMID 12477629 DOI: 10.1016/S0379-0738(02)00347-X  0.443
2002 Antunez-de-Mayolo G, Antunez-de-Mayolo A, Antunez-de-Mayolo P, Papiha SS, Hammer M, Yunis JJ, Yunis EJ, Damodaran C, Martinez de Pancorbo M, Caeiro JL, Puzyrev VP, Herrera RJ. Phylogenetics of worldwide human populations as determined by polymorphic Alu insertions. Electrophoresis. 23: 3346-56. PMID 12373762 DOI: 10.1002/1522-2683(200210)23:19<3346::Aid-Elps3346>3.0.Co;2-J  0.546
2002 Butler JM, Schoske R, Vallone PM, Kline MC, Redd AJ, Hammer MF. A novel multiplex for simultaneous amplification of 20 Y chromosome STR markers. Forensic Science International. 129: 10-24. PMID 12230993 DOI: 10.1016/S0379-0738(02)00195-0  0.377
2002 Redd AJ, Roberts-Thomson J, Karafet T, Bamshad M, Jorde LB, Naidu JM, Walsh B, Hammer MF. Gene flow from the Indian subcontinent to Australia: evidence from the Y chromosome. Current Biology : Cb. 12: 673-7. PMID 11967156 DOI: 10.1016/S0960-9822(02)00789-3  0.432
2002 Stone AC, Griffiths RC, Zegura SL, Hammer MF. High levels of Y-chromosome nucleotide diversity in the genus Pan. Proceedings of the National Academy of Sciences of the United States of America. 99: 43-8. PMID 11756656 DOI: 10.1073/pnas.012364999  0.525
2002 Hammer MF, Zegura SL. The human Y chromosome haplogroup tree: Nomenclature and phylogeography of Its major divisions Annual Review of Anthropology. 31: 303-321. DOI: 10.1146/Annurev.Anthro.31.040402.085413  0.419
2001 Karafet T, Xu L, Du R, Wang W, Feng S, Wells RS, Redd AJ, Zegura SL, Hammer MF. Paternal population history of East Asia: sources, patterns, and microevolutionary processes. American Journal of Human Genetics. 69: 615-28. PMID 11481588 DOI: 10.1086/323299  0.418
2001 Hammer MF, Karafet TM, Redd AJ, Jarjanazi H, Santachiara-Benerecetti S, Soodyall H, Zegura SL. Hierarchical patterns of global human Y-chromosome diversity. Molecular Biology and Evolution. 18: 1189-203. PMID 11420360 DOI: 10.1093/Oxfordjournals.Molbev.A003906  0.474
2001 Bamshad M, Kivisild T, Watkins WS, Dixon ME, Ricker CE, Rao BB, Naidu JM, Prasad BV, Reddy PG, Rasanayagam A, Papiha SS, Villems R, Redd AJ, Hammer MF, Nguyen SV, et al. Genetic evidence on the origins of Indian caste populations. Genome Research. 11: 994-1004. PMID 11381027 DOI: 10.1101/Gr.Gr-1733Rr  0.46
2000 Hammer MF, Redd AJ, Wood ET, Bonner MR, Jarjanazi H, Karafet T, Santachiara-Benerecetti S, Oppenheim A, Jobling MA, Jenkins T, Ostrer H, Bonne-Tamir B. Jewish and Middle Eastern non-Jewish populations share a common pool of Y-chromosome biallelic haplotypes. Proceedings of the National Academy of Sciences of the United States of America. 97: 6769-74. PMID 10801975 DOI: 10.1073/Pnas.100115997  0.721
1999 Karafet TM, Zegura SL, Posukh O, Osipova L, Bergen A, Long J, Goldman D, Klitz W, Harihara S, de Knijff P, Wiebe V, Griffiths RC, Templeton AR, Hammer MF. Ancestral Asian source(s) of new world Y-chromosome founder haplotypes. American Journal of Human Genetics. 64: 817-31. PMID 10053017 DOI: 10.1086/302282  0.414
1998 Hammer MF, Karafet T, Rasanayagam A, Wood ET, Altheide TK, Jenkins T, Griffiths RC, Templeton AR, Zegura SL. Out of Africa and back again: nested cladistic analysis of human Y chromosome variation. Molecular Biology and Evolution. 15: 427-41. PMID 9549093 DOI: 10.1093/Oxfordjournals.Molbev.A025939  0.847
1998 Bouzekri N, Taylor PG, Hammer MF, Jobling MA. Novel mutation processes in the evolution of a haploid minisatellite, MSY1: array homogenization without homogenization. Human Molecular Genetics. 7: 655-9. PMID 9499418 DOI: 10.1093/Hmg/7.4.655  0.322
1998 Passarino G, Semino O, Quintana-Murci L, Excoffier L, Hammer M, Santachiara-Benerecetti AS. Different genetic components in the Ethiopian population, identified by mtDNA and Y-chromosome polymorphisms. American Journal of Human Genetics. 62: 420-34. PMID 9463310 DOI: 10.1086/301702  0.531
1997 Altheide TK, Hammer MF. Evidence for a possible Asian origin of YAP+ Y chromosomes. American Journal of Human Genetics. 61: 462-6. PMID 9311756 DOI: 10.1016/S0002-9297(07)64077-4  0.793
1997 Karafet T, Zegura SL, Vuturo-Brady J, Posukh O, Osipova L, Wiebe V, Romero F, Long JC, Harihara S, Jin F, Dashnyam B, Gerelsaikhan T, Omoto K, Hammer MF. Y chromosome markers and Trans-Bering Strait dispersals. American Journal of Physical Anthropology. 102: 301-14. PMID 9098500 DOI: 10.1002/(Sici)1096-8644(199703)102:3<301::Aid-Ajpa1>3.0.Co;2-Y  0.366
1997 Hammer MF, Spurdle AB, Karafet T, Bonner MR, Wood ET, Novelletto A, Malaspina P, Mitchell RJ, Horai S, Jenkins T, Zegura SL. The geographic distribution of human Y chromosome variation. Genetics. 145: 787-805. PMID 9055088  0.71
1989 Hammer MF, Schimenti J, Silver LM. Evolution of mouse chromosome 17 and the origin of inversions associated with t haplotypes. Proceedings of the National Academy of Sciences of the United States of America. 86: 3261-5. PMID 2717616 DOI: 10.1073/Pnas.86.9.3261  0.322
1987 Hammer MF, Wilson AC. Regulatory and structural genes for lysozymes of mice. Genetics. 115: 521-33. PMID 3569879  0.422
1987 Hammer MF, Schilling JW, Prager EM, Wilson AC. Recruitment of lysozyme as a major enzyme in the mouse gut: duplication, divergence, and regulatory evolution. Journal of Molecular Evolution. 24: 272-9. PMID 3106642 DOI: 10.1007/Bf02111240  0.656
1987 Spicer SS, Erlandsen SL, Wilson AC, Hammer MF, Hennigar RA, Schulte BA. Genetic differences in the histochemically defined structure of oligosaccharides in mice. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 35: 1231-44. PMID 2443557 DOI: 10.1177/35.11.2443557  0.444
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