Thomas D. Kocher, PhD - Publications

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131 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Valente G, Kocher T, Eickbush T, Simões RP, Martins C. Integrated cytogenetics and genomics analysis of transposable elements in the Nile tilapia, Oreochromis niloticus. Molecular Genetics and Genomics : Mgg. PMID 26860923 DOI: 10.1007/s00438-016-1176-1  1
2015 Li M, Sun Y, Zhao J, Shi H, Zeng S, Ye K, Jiang D, Zhou L, Sun L, Tao W, Nagahama Y, Kocher TD, Wang D. A Tandem Duplicate of Anti-Müllerian Hormone with a Missense SNP on the Y Chromosome Is Essential for Male Sex Determination in Nile Tilapia, Oreochromis niloticus. Plos Genetics. 11: e1005678. PMID 26588702 DOI: 10.1371/journal.pgen.1005678  1
2015 Conte MA, Kocher TD. An improved genome reference for the African cichlid, Metriaclima zebra. Bmc Genomics. 16: 724. PMID 26394688 DOI: 10.1186/s12864-015-1930-5  1
2014 Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, ... ... Kocher TD, et al. The genomic substrate for adaptive radiation in African cichlid fish. Nature. 513: 375-81. PMID 25186727 DOI: 10.1038/nature13726  1
2014 Valente GT, Conte MA, Fantinatti BE, Cabral-de-Mello DC, Carvalho RF, Vicari MR, Kocher TD, Martins C. Origin and evolution of B chromosomes in the cichlid fish Astatotilapia latifasciata based on integrated genomic analyses. Molecular Biology and Evolution. 31: 2061-72. PMID 24770715 DOI: 10.1093/molbev/msu148  1
2013 O'Quin CT, Drilea AC, Conte MA, Kocher TD. Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra. Bmc Genomics. 14: 287. PMID 23622422 DOI: 10.1186/1471-2164-14-287  1
2013 Nikaido M, Suzuki H, Toyoda A, Fujiyama A, Hagino-Yamagishi K, Kocher TD, Carleton K, Okada N. Lineage-specific expansion of vomeronasal type 2 receptor-like (OlfC) genes in cichlids may contribute to diversification of amino acid detection systems. Genome Biology and Evolution. 5: 711-22. PMID 23501830 DOI: 10.1093/gbe/evt041  1
2013 Shirak A, Palti Y, Bern O, Kocher TD, Gootwine E, Seroussi E, Hulata G, Ron M, Avtalion RR. A deleterious effect associated with UNH159 is attenuated in twin embryos of an inbred line of blue tilapia Oreochromis aureus. Journal of Fish Biology. 82: 42-53. PMID 23331137 DOI: 10.1111/j.1095-8649.2012.03474.x  1
2013 Loh YH, Bezault E, Muenzel FM, Roberts RB, Swofford R, Barluenga M, Kidd CE, Howe AE, Di Palma F, Lindblad-Toh K, Hey J, Seehausen O, Salzburger W, Kocher TD, Streelman JT. Origins of shared genetic variation in African cichlids. Molecular Biology and Evolution. 30: 906-17. PMID 23275489 DOI: 10.1093/molbev/mss326  1
2012 Poletto AB, Ferreira IA, Cabral-de-Mello DC, Nakajima RT, Mazzuchelli J, Ribeiro HB, Venere PC, Nirchio M, Kocher TD, Martins C. Chromosome differentiation patterns during cichlid fish evolution. Bmc Genetics. 13: 2. PMID 25928185 DOI: 10.1186/1471-2156-13-2  1
2012 Mazzuchelli J, Kocher TD, Yang F, Martins C. Integrating cytogenetics and genomics in comparative evolutionary studies of cichlid fish. Bmc Genomics. 13: 463. PMID 22958299 DOI: 10.1186/1471-2164-13-463  1
2012 Guyon R, Rakotomanga M, Azzouzi N, Coutanceau JP, Bonillo C, D'Cotta H, Pepey E, Soler L, Rodier-Goud M, D'Hont A, Conte MA, van Bers NE, Penman DJ, Hitte C, Crooijmans RP, ... Kocher TD, et al. A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs. Bmc Genomics. 13: 222. PMID 22672252 DOI: 10.1186/1471-2164-13-222  1
2012 O'Quin CT, Drilea AC, Roberts RB, Kocher TD. A small number of genes underlie male pigmentation traits in Lake Malawi cichlid fishes. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 318: 199-208. PMID 22544717 DOI: 10.1002/jez.b.22006  1
2011 Fujimura K, Conte MA, Kocher TD. Circular DNA intermediate in the duplication of Nile tilapia vasa genes. Plos One. 6: e29477. PMID 22216289 DOI: 10.1371/journal.pone.0029477  1
2011 Fujimura K, Kocher TD. Tol2-mediated transgenesis in tilapia (Oreochromis niloticus). Aquaculture (Amsterdam, Netherlands). 319: 342-346. PMID 21938082 DOI: 10.1016/j.aquaculture.2011.07.021  1
2011 Roberts RB, Hu Y, Albertson RC, Kocher TD. Craniofacial divergence and ongoing adaptation via the hedgehog pathway. Proceedings of the National Academy of Sciences of the United States of America. 108: 13194-9. PMID 21788496 DOI: 10.1073/pnas.1018456108  1
2011 Mazzuchelli J, Yang F, Kocher TD, Martins C. Comparative cytogenetic mapping of Sox2 and Sox14 in cichlid fishes and inferences on the genomic organization of both genes in vertebrates. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 19: 657-67. PMID 21691861 DOI: 10.1007/s10577-011-9225-4  1
2011 Lee BY, Coutanceau JP, Ozouf-Costaz C, D'Cotta H, Baroiller JF, Kocher TD. Genetic and physical mapping of sex-linked AFLP markers in Nile tilapia (Oreochromis niloticus). Marine Biotechnology (New York, N.Y.). 13: 557-62. PMID 20953654 DOI: 10.1007/s10126-010-9326-7  1
2010 Soler L, Conte MA, Katagiri T, Howe AE, Lee BY, Amemiya C, Stuart A, Dossat C, Poulain J, Johnson J, Di Palma F, Lindblad-Toh K, Baroiller JF, D'Cotta H, Ozouf-Costaz C, ... Kocher TD, et al. Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus). Bmc Genomics. 11: 636. PMID 21080946 DOI: 10.1186/1471-2164-11-636  1
2010 Ferreira IA, Poletto AB, Kocher TD, Mota-Velasco JC, Penman DJ, Martins C. Chromosome evolution in African cichlid fish: contributions from the physical mapping of repeated DNAs. Cytogenetic and Genome Research. 129: 314-22. PMID 20606399 DOI: 10.1159/000315895  1
2010 Poletto AB, Ferreira IA, Cabral-de-Mello DC, Nakajima RT, Mazzuchelli J, Ribeiro HB, Venere PC, Nirchio M, Kocher TD, Martins C. Chromosome differentiation patterns during cichlid fish evolution. Bmc Genetics. 11: 50. PMID 20550671 DOI: 10.1186/1471-2156-11-50  1
2010 Lee BY, Howe AE, Conte MA, D'Cotta H, Pepey E, Baroiller JF, di Palma F, Carleton KL, Kocher TD. An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags. Bmc Genomics. 11: 278. PMID 20433739 DOI: 10.1186/1471-2164-11-278  1
2010 Shirak A, Grabherr M, Di Palma F, Lindblad-Toh K, Hulata G, Ron M, Kocher TD, Seroussi E. Identification of repetitive elements in the genome of Oreochromis niloticus: tilapia repeat masker. Marine Biotechnology (New York, N.Y.). 12: 121-5. PMID 19936833 DOI: 10.1007/s10126-009-9236-8  1
2010 Ser JR, Roberts RB, Kocher TD. Multiple interacting loci control sex determination in lake Malawi cichlid fish. Evolution; International Journal of Organic Evolution. 64: 486-501. PMID 19863587 DOI: 10.1111/j.1558-5646.2009.00871.x  1
2009 Roberts RB, Ser JR, Kocher TD. Sexual conflict resolved by invasion of a novel sex determiner in Lake Malawi cichlid fishes. Science (New York, N.Y.). 326: 998-1001. PMID 19797625 DOI: 10.1126/science.1174705  1
2008 Cnaani A, Kocher TD. Sex-linked markers and microsatellite locus duplication in the cichlid species Oreochromis tanganicae. Biology Letters. 4: 700-3. PMID 18700198 DOI: 10.1098/rsbl.2008.0286  1
2008 Shirak A, Golik M, Lee BY, Howe AE, Kocher TD, Hulata G, Ron M, Seroussi E. Copy number variation of lipocalin family genes for male-specific proteins in tilapia and its association with gender. Heredity. 101: 405-15. PMID 18648387 DOI: 10.1038/hdy.2008.68  1
2008 Loh YH, Katz LS, Mims MC, Kocher TD, Yi SV, Streelman JT. Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids. Genome Biology. 9: R113. PMID 18616806 DOI: 10.1186/gb-2008-9-7-r113  1
2008 Cnaani A, Lee BY, Zilberman N, Ozouf-Costaz C, Hulata G, Ron M, D'Hont A, Baroiller JF, D'Cotta H, Penman DJ, Tomasino E, Coutanceau JP, Pepey E, Shirak A, Kocher TD. Genetics of sex determination in tilapiine species. Sexual Development : Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation. 2: 43-54. PMID 18418034 DOI: 10.1159/000117718  1
2007 Cnaani A, Lee BY, Ozouf-Costaz C, Bonillo C, Baroiller JF, D'Cotta H, Kocher TD. Mapping of sox2 and sox14 in tilapia (Oreochromis spp.) Sexual Development. 1: 207-210. PMID 18391531 DOI: 10.1159/000102109  1
2007 Di Palma F, Kidd C, Borowsky R, Kocher TD. Construction of bacterial artificial chromosome libraries for the Lake Malawi cichlid (Metriaclima zebra), and the blind cavefish (Astyanax mexicanus). Zebrafish. 4: 41-7. PMID 18041941 DOI: 10.1089/zeb.2006.9996  1
2007 Lee BY, Kocher TD. Exclusion of Wilms tumour (WT1b) and ovarian cytochrome P450 aromatase (CYP19A1) as candidates for sex determination genes in Nile tilapia (Oreochromis niloticus). Animal Genetics. 38: 85-6. PMID 17257199 DOI: 10.1111/j.1365-2052.2007.01563.x  1
2007 Streelman JT, Albertson RC, Kocher TD. Variation in body size and trophic morphology within and among genetically differentiated populations of the cichlid fish, Metriaclima zebra, from Lake Malawi Freshwater Biology. 52: 525-538. DOI: 10.1111/j.1365-2427.2006.01720.x  1
2006 Schliewen UK, Kocher TD, McKaye KR, Seehausen O, Tautz D. Evolutionary biology: evidence for sympatric speciation? Nature. 444: E12-3; discussion E1. PMID 17151605 DOI: 10.1038/nature05419  1
2006 Shirak A, Seroussi E, Cnaani A, Howe AE, Domokhovsky R, Zilberman N, Kocher TD, Hulata G, Ron M. Amh and Dmrta2 genes map to tilapia (Oreochromis spp.) linkage group 23 within quantitative trait locus regions for sex determination. Genetics. 174: 1573-81. PMID 16951079 DOI: 10.1534/genetics.106.059030  1
2006 Albertson RC, Kocher TD. Genetic and developmental basis of cichlid trophic diversity. Heredity. 97: 211-21. PMID 16835594 DOI: 10.1038/sj.hdy.6800864  1
2006 Kidd MR, Kidd CE, Kocher TD. Axes of differentiation in the bower-building cichlids of Lake Malawi. Molecular Ecology. 15: 459-78. PMID 16448413 DOI: 10.1111/j.1365-294X.2005.02787.x  1
2006 Kidd MR, Danley PD, Kocher TD. A direct assay of female choice in cichlids: All the eggs in one basket Journal of Fish Biology. 68: 373-384. DOI: 10.1111/j.0022-1112.2006.00896.x  1
2006 Kidd MR, Danley PD, Kocher TD. A direct assay of female choice in cichlids: All the eggs in one basket Journal of Fish Biology. 68: 373-384. DOI: 10.1111/j.0022-1112.2006.00896.x  0.04
2005 Kocher TD, Jeffery WR, Parichy DM, Peichel CL, Streelman JT, Thorgaard GH. Special feature--roundtable discussion. Fish models for studying adaptive evolution and speciation. Zebrafish. 2: 147-56. PMID 18248189 DOI: 10.1089/zeb.2005.2.147  1
2005 Albertson RC, Streelman JT, Kocher TD, Yelick PC. Integration and evolution of the cichlid mandible: the molecular basis of alternate feeding strategies. Proceedings of the National Academy of Sciences of the United States of America. 102: 16287-92. PMID 16251275 DOI: 10.1073/pnas.0506649102  1
2005 Curole JP, Kocher TD. Evolution of a unique mitotype-specific protein-coding extension of the cytochrome c oxidase II gene in freshwater mussels (Bivalvia: Unionoida). Journal of Molecular Evolution. 61: 381-9. PMID 16082567 DOI: 10.1007/s00239-004-0192-7  1
2005 Katagiri T, Kidd C, Tomasino E, Davis JT, Wishon C, Stern JE, Carleton KL, Howe AE, Kocher TD. A BAC-based physical map of the Nile tilapia genome. Bmc Genomics. 6: 89. PMID 15946383 DOI: 10.1186/1471-2164-6-89  1
2005 Kocher TD. Evolutionary biology: ghost of speciation past. Nature. 435: 29-30. PMID 15875001 DOI: 10.1038/435029a  1
2005 Albertson RC, Kocher TD. Genetic architecture sets limits on transgressive segregation in hybrid cichlid fishes. Evolution; International Journal of Organic Evolution. 59: 686-90. PMID 15856710  1
2005 Spady TC, Seehausen O, Loew ER, Jordan RC, Kocher TD, Carleton KL. Adaptive molecular evolution in the opsin genes of rapidly speciating cichlid species. Molecular Biology and Evolution. 22: 1412-22. PMID 15772376 DOI: 10.1093/molbev/msi137  1
2005 Lee BY, Lee WJ, Streelman JT, Carleton KL, Howe AE, Hulata G, Slettan A, Stern JE, Terai Y, Kocher TD. A second-generation genetic linkage map of tilapia (Oreochromis spp.). Genetics. 170: 237-44. PMID 15716505 DOI: 10.1534/genetics.104.035022  1
2004 Streelman JT, Gmyrek SL, Kidd MR, Kidd C, Robinson RL, Hert E, Ambali AJ, Kocher TD. Hybridization and contemporary evolution in an introduced cichlid fish from Lake Malawi National Park. Molecular Ecology. 13: 2471-9. PMID 15245419 DOI: 10.1111/j.1365-294X.2004.02240.x  1
2004 Kocher TD. Adaptive evolution and explosive speciation: the cichlid fish model. Nature Reviews. Genetics. 5: 288-98. PMID 15131652 DOI: 10.1038/nrg1316  1
2004 Lee BY, Hulata G, Kocher TD. Two unlinked loci controlling the sex of blue tilapia (Oreochromis aureus). Heredity. 92: 543-9. PMID 15100706 DOI: 10.1038/sj.hdy.6800453  1
2003 Streelman JT, Webb JF, Albertson RC, Kocher TD. The cusp of evolution and development: a model of cichlid tooth shape diversity. Evolution & Development. 5: 600-8. PMID 14984042 DOI: 10.1046/j.1525-142X.2003.03065.x  1
2003 Cnaani A, Lee BY, Ron M, Hulata G, Kocher TD, Seroussi E. Linkage mapping of major histocompatibility complex class I loci in tilapia (Oreochromis spp.). Animal Genetics. 34: 390-1. PMID 14510682 DOI: 10.1046/j.1365-2052.2003.01045.x  1
2003 Lee BY, Penman DJ, Kocher TD. Identification of a sex-determining region in Nile tilapia (Oreochromis niloticus) using bulked segregant analysis. Animal Genetics. 34: 379-83. PMID 14510676 DOI: 10.1046/j.1365-2052.2003.01035.x  1
2003 Albertson RC, Streelman JT, Kocher TD. Genetic basis of adaptive shape differences in the cichlid head. The Journal of Heredity. 94: 291-301. PMID 12920100 DOI: 10.1093/jhered/esg071  1
2003 Streelman JT, Albertson RC, Kocher TD. Genome mapping of the orange blotch colour pattern in cichlid fishes. Molecular Ecology. 12: 2465-71. PMID 12919484 DOI: 10.1046/j.1365-294X.2003.01920.x  1
2003 Kocher TD. Evolutionary biology: Fractious phylogenies. Nature. 423: 489, 491. PMID 12774106 DOI: 10.1038/423489a  1
2003 Albertson RC, Streelman JT, Kocher TD. Directional selection has shaped the oral jaws of Lake Malawi cichlid fishes. Proceedings of the National Academy of Sciences of the United States of America. 100: 5252-7. PMID 12704237 DOI: 10.1073/pnas.0930235100  1
2003 Carleton KL, Kocher TD. Rose-colored goggles. Heredity. 90: 116-7. PMID 12634813 DOI: 10.1038/sj.hdy.6800223  1
2002 Diller KC, Gilbert WA, Kocher TD. Selective sweeps in the human genome: a starting point for identifying genetic differences between modern humans and chimpanzees. Molecular Biology and Evolution. 19: 2342-5. PMID 12446828  1
2002 Curole JP, Kocher TD. Ancient sex-specific extension of the cytochrome c oxidase II gene in bivalves and the fidelity of doubly-uniparental inheritance. Molecular Biology and Evolution. 19: 1323-8. PMID 12140244  1
2002 Carleton KL, Streelman JT, Lee BY, Garnhart N, Kidd M, Kocher TD. Rapid isolation of CA microsatellites from the tilapia genome. Animal Genetics. 33: 140-4. PMID 12047227 DOI: 10.1046/j.1365-2052.2002.00817.x  1
2002 Streelman JT, Kocher TD. Microsatellite variation associated with prolactin expression and growth of salt-challenged tilapia. Physiological Genomics. 9: 1-4. PMID 11948285  1
2002 Cnaani A, Ron M, Lee BY, Hulata G, Kocher TD, Seroussi E. Mapping the transferrin gene in tilapia. Animal Genetics. 33: 78-80. PMID 11849146 DOI: 10.1046/j.1365-2052.2002.0742e.x  1
2002 Rosel PE, Kocher TD. DNA-based identification of larval cod in stomach contents of predatory fishes Journal of Experimental Marine Biology and Ecology. 267: 75-88. DOI: 10.1016/S0022-0981(01)00359-8  1
2001 Carleton KL, Kocher TD. Cone opsin genes of african cichlid fishes: tuning spectral sensitivity by differential gene expression. Molecular Biology and Evolution. 18: 1540-50. PMID 11470845  1
2001 Schliewen U, Rassmann K, Markmann M, Markert J, Kocher T, Tautz D. Genetic and ecological divergence of a monophyletic cichlid species pair under fully sympatric conditions in Lake Ejagham, Cameroon. Molecular Ecology. 10: 1471-88. PMID 11412369 DOI: 10.1046/j.1365-294X.2001.01276.x  1
2001 Danley PD, Kocher TD. Speciation in rapidly diverging systems: lessons from Lake Malawi. Molecular Ecology. 10: 1075-86. PMID 11380867 DOI: 10.1046/j.1365-294X.2001.01283.x  1
2001 Albertson RC, Kocher TD. Assessing morphological differences in an adaptive trait: a landmark-based morphometric approach. The Journal of Experimental Zoology. 289: 385-403. PMID 11351326 DOI: 10.1002/jez.1020  1
2000 Streelman JT, Kocher TD. From phenotype to genotype. Evolution & Development. 2: 166-73. PMID 11252573 DOI: 10.1046/j.1525-142X.2000.00056.x  1
2000 Danley PD, Markert JA, Arnegard ME, Kocher TD. Divergence with gene flow in the rock-dwelling cichlids of Lake Malawi. Evolution; International Journal of Organic Evolution. 54: 1725-37. PMID 11108599  1
2000 Koh HS, Lee WJ, Kocher TD. The genetic relationships of two subspecies of striped field mice, Apodemus agrarius coreae and Apodemus agrarius chejuensis. Heredity. 85: 30-6. PMID 10971688 DOI: 10.1046/j.1365-2540.2000.00723.x  1
2000 Carleton KL, Hárosi FI, Kocher TD. Visual pigments of African cichlid fishes: evidence for ultraviolet vision from microspectrophotometry and DNA sequences. Vision Research. 40: 879-90. PMID 10720660 DOI: 10.1016/S0042-6989(99)00238-2  1
2000 Carter PA, Mitton JB, Kocher TD, Coelho JR. Maintenance of the alcohol dehydrogenase polymorphism in Tiger Salamanders, II. Differences in biochemical function among allozymes Functional Ecology. 14: 70-76. DOI: 10.1046/j.1365-2435.2000.00390.x  1
2000 Carter PA, Mitton JB, Kocher TD, Coelho JR. Maintenance of the alcohol dehydrogenase polymorphism in Tiger Salamanders, II. Differences in biochemical function among allozymes Functional Ecology. 14: 70-76. DOI: 10.1046/j.1365-2435.2000.00390.x  0.4
1999 Rosel PE, France SC, Wang JY, Kocher TD. Genetic structure of harbour porpoise Phocoena phocoena populations in the northwest Atlantic based on mitochondrial and nuclear markers. Molecular Ecology. 8: S41-54. PMID 10703550  1
1999 Curole JP, Kocher TD. Mitogenomics: digging deeper with complete mitochondrial genomes. Trends in Ecology & Evolution. 14: 394-398. PMID 10481201 DOI: 10.1016/S0169-5347(99)01660-2  1
1999 Albertson RC, Markert JA, Danley PD, Kocher TD. Phylogeny of a rapidly evolving clade: the cichlid fishes of Lake Malawi, East Africa. Proceedings of the National Academy of Sciences of the United States of America. 96: 5107-10. PMID 10220426 DOI: 10.1073/pnas.96.9.5107  1
1999 Arnegard ME, Markert JA, Danley PD, Stauffer JR, Ambali AJ, Kocher TD. Population structure and colour variation of the cichlid fish Labeotropheus fuelleborni Ahl along a recently formed archipelago of rocky habitat patches in southern Lake Malawi Proceedings of the Royal Society B: Biological Sciences. 266: 119-130. DOI: 10.1098/rspb.1999.0611  1
1999 Arnegard ME, Markert JA, Danley PD, Stauffer JR, Ambali AJ, Kocher TD. Population structure and colour variation of the cichlid fish Labeotropheus fuelleborni Ahl along a recently formed archipelago of rocky habitat patches in southern Lake Malawi Proceedings of the Royal Society B: Biological Sciences. 266: 119-130. DOI: 10.1098/rspb.1999.0611  0.56
1999 Marker JA, Arnegard ME, Danley PD, Kocher TD. Biogeography and population genetics of the Lake Malawi cichlid Melanochromis auratus: Habitat transience, philopatry and speciation Molecular Ecology. 8: 1013-1026. DOI: 10.1046/j.1365-294X.1999.00658.x  1
1999 Marker JA, Arnegard ME, Danley PD, Kocher TD. Biogeography and population genetics of the Lake Malawi cichlid Melanochromis auratus: Habitat transience, philopatry and speciation Molecular Ecology. 8: 1013-1026. DOI: 10.1046/j.1365-294X.1999.00658.x  0.04
1998 Lee WJ, Kocher TD. Microsatellite mapping of the prolactin locus in the tilapia genome. Animal Genetics. 29: 68-9. PMID 9682461  1
1998 Kocher TD, Lee WJ, Sobolewska H, Penman D, McAndrew B. A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics. 148: 1225-32. PMID 9539437  1
1998 Kellogg KA, Markert JA, Stauffer JR, Kocher TD. Intraspecific brood mixing and reduced polyandry in a maternal mouth-brooding cichlid Behavioral Ecology. 9: 309-312.  1
1998 Kellogg KA, Markert JA, Stauffer JR, Kocher TD. Intraspecific brood mixing and reduced polyandry in a maternal mouth-brooding cichlid Behavioral Ecology. 9: 309-312.  0.56
1997 Litvaitis MK, Litvaitis JA, Lee WJ, Kocher TD. Variation in the mitochondrial DNA of the Sylvilagus complex occupying the northeastern United States Canadian Journal of Zoology. 75: 595-605.  1
1997 Litvaitis MK, Litvaitis JA, Lee WJ, Kocher TD. Variation in the mitochondrial DNA of the Sylvilagus complex occupying the northeastern United States Canadian Journal of Zoology. 75: 595-605.  1
1997 Alcivar-Warren A, Dunham R, Gaffney P, Kocher T, Thorgaard G. First aquaculture species genome mapping workshop Animal Genetics. 28: 451-452.  1
1996 France SC, Kocher TD. DNA sequencing of formalin-fixed crustaceans from archival research collections. Molecular Marine Biology and Biotechnology. 5: 304-13. PMID 8983199  1
1996 France SC, Rosel PE, Agenbroad JE, Mullineaux LS, Kocher TD. DNA sequence variation of mitochondrial large-subunit rRNA provides support for a two-subclass organization of the Anthozoa (Cnidaria). Molecular Marine Biology and Biotechnology. 5: 15-28. PMID 8869515  1
1996 Litvaitis MK, Curini-Galletti MC, Martens PM, Kocher TD. A reappraisal of the systematics of the monocelididae (Platyhelminthes, Proseriata): inferences from rDNA sequences. Molecular Phylogenetics and Evolution. 6: 150-6. PMID 8812315 DOI: 10.1006/mpev.1996.0067  1
1996 Perna NT, Kocher TD. Mitochondrial DNA: molecular fossils in the nucleus. Current Biology : Cb. 6: 128-9. PMID 8673455  1
1996 Bucklin A, Kocher TD. Source regions for recruitment of Calanus finmarchicus to Georges Bank: Evidence from molecular population genetic analysis of mtDNA Deep-Sea Research Part Ii: Topical Studies in Oceanography. 43: 1665-1681. DOI: 10.1016/S0967-0645(96)00059-8  1
1996 Lee WJ, Kocher TD. Microsatellite DNA markers for genetic mapping in Oreochromis niloticus Journal of Fish Biology. 49: 169-171. DOI: 10.1006/jfbi.1996.0145  1
1996 Stauffer J.R. J, Bowers NJ, Kocher TD, McKaye KR. Evidence of hybridization between Cynotilapia afra and Pseudotropheus zebra (Teleostei: Cichlidae) following an intralacustrine translocation in Lake Malawi Copeia. 203-208.  1
1996 Stauffer J.R. J, Bowers NJ, Kocher TD, McKaye KR. Evidence of hybridization between Cynotilapia afra and Pseudotropheus zebra (Teleostei: Cichlidae) following an intralacustrine translocation in Lake Malawi Copeia. 203-208.  1
1996 France SC, Kocher TD. Geographic and bathymetric patterns of mitochondrial 16S rRNA sequence divergence among deep-sea amphipods, Eurythenes gryllus Marine Biology. 126: 633-643.  1
1995 Kocher TD, Conroy JA, McKaye KR, Stauffer JR, Lockwood SF. Evolution of NADH dehydrogenase subunit 2 in east African cichlid fish. Molecular Phylogenetics and Evolution. 4: 420-32. PMID 8747298 DOI: 10.1006/mpev.1995.1039  1
1995 Caporale DA, Rich SM, Spielman A, Telford SR, Kocher TD. Discriminating between Ixodes ticks by means of mitochondrial DNA sequences. Molecular Phylogenetics and Evolution. 4: 361-5. PMID 8747292 DOI: 10.1006/mpev.1995.1033  1
1995 Lee WJ, Kocher TD. Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organization. Genetics. 139: 873-87. PMID 7713438  1
1995 Lee WJ, Conroy J, Howell WH, Kocher TD. Structure and evolution of teleost mitochondrial control regions. Journal of Molecular Evolution. 41: 54-66. PMID 7608989 DOI: 10.1007/BF00174041  1
1995 Glasner JD, Kocher TD, Collins JJ. Caenorhabditis elegans contains genes encoding two new members of the Zn-containing alcohol dehydrogenase family. Journal of Molecular Evolution. 41: 46-53. PMID 7608988 DOI: 10.1007/BF00174040  1
1995 Rich SM, Caporale DA, Telford SR, Kocher TD, Hartl DL, Spielman A. Distribution of the Ixodes ricinus-like ticks of eastern North America. Proceedings of the National Academy of Sciences of the United States of America. 92: 6284-8. PMID 7603983 DOI: 10.1073/pnas.92.14.6284  1
1995 Perna NT, Kocher TD. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. Journal of Molecular Evolution. 41: 353-8. PMID 7563121 DOI: 10.1007/BF01215182  1
1995 Bucklin A, Frost BW, Kocher TD. Molecular systematics of six Calanus and three Metridia species (Calanoida: Copepoda) Marine Biology. 121: 655-664. DOI: 10.1007/BF00349301  1
1995 Miller HG, Kocher TD, Loy B. New MADS box domains in Asparagus officinalis L. Sexual Plant Reproduction. 8: 318-320. DOI: 10.1007/BF00229390  1
1995 Medeiros-Bergen DE, Olson RR, Conroy JA, Kocher TD. Distribution of holothurian larvae determined with species-specific genetic probes Limnology and Oceanography. 40: 1225-1235.  1
1995 Medeiros-Bergen DE, Olson RR, Conroy JA, Kocher TD. Distribution of holothurian larvae determined with species-specific genetic probes Limnology and Oceanography. 40: 1225-1235.  0.56
1995 Kellogg KA, Markert JA, Stauffer JR, Kocher TD. Microsatellite variation demonstrates multiple paternity in lekking cichlid fishes from Lake Malawi, Africa Proceedings of the Royal Society B: Biological Sciences. 260: 79-84.  1
1995 Kellogg KA, Markert JA, Stauffer JR, Kocher TD. Microsatellite variation demonstrates multiple paternity in lekking cichlid fishes from Lake Malawi, Africa Proceedings of the Royal Society B: Biological Sciences. 260: 79-84.  0.56
1994 Caporale DA, Kocher TD. Sequence variation in the outer-surface-protein genes of Borrelia burgdorferi. Molecular Biology and Evolution. 11: 51-64. PMID 8121286  1
1994 Bowers N, Stauffer JR, Kocher TD. Intra- and interspecific mitochondrial DNA sequence variation within two species of rock-dwelling cichlids (Teleostei: Cichlidae) from Lake Malawi, Africa. Molecular Phylogenetics and Evolution. 3: 75-82. PMID 8025732 DOI: 10.1006/mpev.1994.1009  1
1994 Bowers N, Stauffer JR, Kocher TD. Intra- and interspecific mitochondrial DNA sequence variation within two species of rock-dwelling cichlids (Teleostei: Cichlidae) from Lake Malawi, Africa. Molecular Phylogenetics and Evolution. 3: 393. PMID 7697196  1
1994 Litvaitis MK, Nunn G, Thomas WK, Kocher TD. A molecular approach for the identification of meiofaunal turbellarians (Platyhelminthes, Turbellaria) Marine Biology. 120: 437-442. DOI: 10.1007/BF00680218  1
1994 Litvaitis MK, Nunn G, Thomas WK, Kocher TD. A molecular approach for the identification of meiofaunal turbellarians (Platyhelminthes, Turbellaria) Marine Biology. 120: 437-442. DOI: 10.1007/BF00680218  1
1993 Kornegay JR, Kocher TD, Williams LA, Wilson AC. Pathways of lysozyme evolution inferred from the sequences of cytochrome b in birds. Journal of Molecular Evolution. 37: 367-79. PMID 8308906 DOI: 10.1007/BF00178867  1
1993 Hasegawa M, Di Rienzo A, Kocher TD, Wilson AC. Toward a more accurate time scale for the human mitochondrial DNA tree. Journal of Molecular Evolution. 37: 347-54. PMID 8308904 DOI: 10.1007/BF00178865  1
1993 Thomas WK, Kocher TD. Sequencing of polymerase chain reaction-amplified DNAs. Methods in Enzymology. 224: 391-9. PMID 8264399 DOI: 10.1016/0076-6879(93)24029-T  1
1993 Kocher TD, Conroy JA, McKaye KR, Stauffer JR. Similar morphologies of cichlid fish in Lakes Tanganyika and Malawi are due to convergence. Molecular Phylogenetics and Evolution. 2: 158-65. PMID 8025722 DOI: 10.1006/mpev.1993.1016  1
1993 Xiong B, Kocher TD. Phylogeny of sibling species of Simulium venustum and S. verecundum (Diptera: Simuliidae) based on sequences of the mitochondrial 16S rRNA gene. Molecular Phylogenetics and Evolution. 2: 293-303. PMID 7519520 DOI: 10.1006/mpev.1993.1028  1
1992 Kocher TD. PCR, direct sequencing, and the comparative approach. Pcr Methods and Applications. 1: 217-21. PMID 1477655  1
1991 Xiong B, Kocher TD. Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera: Simuliidae). Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 34: 306-11. PMID 2055453  1
1991 Olson RR, Runstadler JA, Kocher TD. Whose larvae? Nature. 351: 357-8. PMID 2034285 DOI: 10.1038/351357b0  1
1991 Irwin DM, Kocher TD, Wilson AC. Evolution of the cytochrome b gene of mammals. Journal of Molecular Evolution. 32: 128-44. PMID 1901092 DOI: 10.1007/BF02515385  1
1991 Runstadler JA, Kocher TD. A new antennapedia-class gene from the zebrafish. Nucleic Acids Research. 19: 5434. PMID 1681510 DOI: 10.1093/nar/19.19.5434  1
1991 Meyer A, Kocher TD, Wilson AC. African fishes [7] Nature. 350: 467-468.  1
1990 Meyer A, Kocher TD, Basasibwaki P, Wilson AC. Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences. Nature. 347: 550-3. PMID 2215680 DOI: 10.1038/347550a0  1
1989 Kocher TD, Thomas WK, Meyer A, Edwards SV, Pääbo S, Villablanca FX, Wilson AC. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the United States of America. 86: 6196-200. PMID 2762322  1
1989 Vigilant L, Pennington R, Harpending H, Kocher TD, Wilson AC. Mitochondrial DNA sequences in single hairs from a southern African population. Proceedings of the National Academy of Sciences of the United States of America. 86: 9350-4. PMID 2594772 DOI: 10.1073/pnas.86.23.9350  1
1989 Wilson AC, Zimmer EA, Prager EM, Kocher TD. Restriction mapping in the molecular systematics of mammals: A retrospective salute The Hierarchy of Life. Molecules and Morphology in Phylogenetic Analysis: Proceedings From Nobel Symposium 70. Ics824. 407-419.  1
1986 Kocher TD, Sage RD. Further genetic analyses of a hybrid zone between leopard frogs ( Rana pipiens complex) in central Texas Evolution. 40: 21-33.  1
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