Thomas D. Kocher, PhD - Related publications

1977-1981 Biology Yale University, New Haven, CT 
 1981-1986 Biology University of Colorado, Boulder, Boulder, CO, United States 
 1986-1989 Biochemistry University of California, Berkeley, Berkeley, CA 
 1989-2007 Zoology University of New Hampshire, Durham, NH, United States 
 2007- Biology University of Maryland, College Park, College Park, MD 
Evolutionary Genetics
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30 most relevant papers in past 60 days:
Year Citation  Score
2021 Chakraborty M, Chang CH, Khost DE, Vedanayagam J, Adrion JR, Liao Y, Montooth KL, Meiklejohn CD, Larracuente AM, Emerson JJ. Evolution of genome structure in the species complex. Genome Research. PMID 33563718 DOI: 10.1101/gr.263442.120   
2021 Yocca AE, Lu Z, Schmitz RJ, Freeling M, Edger PP. Evolution of conserved noncoding sequences in Arabidopsis thaliana. Molecular Biology and Evolution. PMID 33565589 DOI: 10.1093/molbev/msab042   
2021 Zhao N, Guo H, Jia L, Guo B, Zheng D, Liu S, Zhang B. Genome assembly and annotation at the chromosomal level of first Pleuronectidae: Verasper variegatus provides a basis for phylogenetic study of Pleuronectiformes. Genomics. PMID 33535123 DOI: 10.1016/j.ygeno.2021.01.024   
2021 Wang ZF, Liu TH, Cao HL. The complete chloroplast genome sequence of . Mitochondrial Dna. Part B, Resources. 6: 548-549. PMID 33628923 DOI: 10.1080/23802359.2021.1872434   
2021 Conti A, Corte L, Casagrande Pierantoni D, Robert V, Cardinali G. What Is the Best Lens? Comparing the Resolution Power of Genome-Derived Markers and Standard Barcodes. Microorganisms. 9. PMID 33540579 DOI: 10.3390/microorganisms9020299   
2021 Yin M, Zhang S, Du X, Mateo RG, Guo W, Li A, Wang Z, Wu S, Chen J, Liu J, Ren G. Genomic analysis of Medicago ruthenica provides insights into its tolerance to abiotic stress and demographic history. Molecular Ecology Resources. PMID 33615703 DOI: 10.1111/1755-0998.13363   
2021 Dai Y, Huang S, Sun G, Li H, Chen S, Gao Y, Chen J. Origins and chromosome differentiation of revealed by , genes and ND-FISH. Genome. PMID 33596125 DOI: 10.1139/gen-2019-0176   
2021 Liu K, Wang R, Guo XX, Zhang XJ, Qu XJ, Fan SJ. Comparative and Phylogenetic Analysis of Complete Chloroplast Genomes in Eragrostideae (Chloridoideae, Poaceae). Plants (Basel, Switzerland). 10. PMID 33419221 DOI: 10.3390/plants10010109   
2021 Yan H, Ren Z, Deng D, Yang K, Yang C, Zhou P, Wight CP, Ren C, Peng Y. New evidence confirming the CD genomic constitutions of the tetraploid Avena species in the section Pachycarpa Baum. Plos One. 16: e0240703. PMID 33417607 DOI: 10.1371/journal.pone.0240703   
2021 Amorim IC, Sotero-Caio CG, Costa RGC, Xavier C, de Moura RC. Comprehensive mapping of transposable elements reveals distinct patterns of element accumulation on chromosomes of wild beetles. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 33638119 DOI: 10.1007/s10577-021-09655-4   
2021 Ye YX, Zhang HH, Li DT, Zhuo JC, Shen Y, Hu QL, Zhang CX. Chromosome-level assembly of the brown planthopper genome with a characterized Y chromosome. Molecular Ecology Resources. PMID 33460519 DOI: 10.1111/1755-0998.13328   
2021 Wang ZF, Qin QM, Cao HL. The complete chloroplast genome of (Fabaceae). Mitochondrial Dna. Part B, Resources. 6: 460-461. PMID 33628888 DOI: 10.1080/23802359.2020.1871437   
2021 Zhang G, Wang H, Yin X, Kong W, Wang Q, Chen Y, Wei J, Liu J, Guo X. Characterization of the complete chloroplast genome of N. P. Balakr. (Apiaceae) and its phylogenetic implications. Mitochondrial Dna. Part B, Resources. 6: 447-449. PMID 33628883 DOI: 10.1080/23802359.2020.1870902   
2021 Kranjc N, Crisanti A, Nolan T, Bernardini F. Genome Conservation as a Resource for Rational Gene Drive Target Site Selection. Insects. 12. PMID 33498790 DOI: 10.3390/insects12020097   
2021 Cui Y, Wu B, Peng A, Song X, Chen X. The Genome of Banana Leaf Blight Pathogen str. FS66 Harbors Widespread Gene Transfer From . Frontiers in Plant Science. 12: 629859. PMID 33613610 DOI: 10.3389/fpls.2021.629859   
2021 Niu YF, Ni SB, Liu SH, Liu J. The complete chloroplast genome of , a tropical fruit with a distinctive aroma. Mitochondrial Dna. Part B, Resources. 6: 488-490. PMID 33628899 DOI: 10.1080/23802359.2021.1872442   
2021 Xu G, Zhu P, Zhu W, Ma B, Li X, Li W. Characterization of the complete mitochondrial genome of Notocotylus sp. (Trematoda, Notocotylidae) and its phylogenetic implications. Parasitology Research. PMID 33559042 DOI: 10.1007/s00436-021-07075-1   
2021 Wang ZF, Cao HL. The complete mitochondrial genome sequence of . Mitochondrial Dna. Part B, Resources. 6: 381-383. PMID 33628874 DOI: 10.1080/23802359.2020.1869609   
2021 Homonnay Z, Jakab S, Bali K, Kaszab E, Mató T, Kiss I, Palya V, Bányai K. Genome sequencing of a novel variant of fowl adenovirus B reveals mosaicism in the pattern of homologous recombination events. Archives of Virology. PMID 33616725 DOI: 10.1007/s00705-021-04972-9   
2021 Strijk JS, Hinsinger DD, Roeder MM, Chatrou LW, Couvreur TLP, Erkens RHJ, Sauquet H, Pirie MD, Thomas DC, Cao K. Chromosome-level reference genome of the soursop (Annona muricata): a new resource for Magnoliid research and tropical pomology. Molecular Ecology Resources. PMID 33569882 DOI: 10.1111/1755-0998.13353   
2021 Butković A, González R, Elena SF. Revisiting Orthotospovirus phylogeny using full-genome data and testing the contribution of selection, recombination and segment reassortment in the origin of members of new species. Archives of Virology. PMID 33394171 DOI: 10.1007/s00705-020-04902-1   
2021 Jiang X, Zhang Y, Tong L, Xu X, Tian Y, Wang H. The complete chloroplast genome sequence of (J.Anthony) Rehder (Styracaceae). Mitochondrial Dna. Part B, Resources. 6: 205-207. PMID 33537445 DOI: 10.1080/23802359.2020.1860695   
2021 Macey JR, Pabinger S, Barbieri CG, Buring ES, Gonzalez VL, Mulcahy DG, DeMeo DP, Urban L, Hime PM, Prost S, Elliott AN, Gemmell NJ. Evidence of two deeply divergent co-existing mitochondrial genomes in the Tuatara reveals an extremely complex genomic organization. Communications Biology. 4: 116. PMID 33514857 DOI: 10.1038/s42003-020-01639-0   
2021 Dong F, Lin Z, Lin J, Ming R, Zhang W. Chloroplast Genome of Rambutan and Comparative Analyses in Sapindaceae. Plants (Basel, Switzerland). 10. PMID 33540810 DOI: 10.3390/plants10020283   
2021 Wang W, Peng D, Baptista RP, Li Y, Kissinger JC, Tarleton RL. Strain-specific genome evolution in Trypanosoma cruzi, the agent of Chagas disease. Plos Pathogens. 17: e1009254. PMID 33508020 DOI: 10.1371/journal.ppat.1009254   
2021 Friis G, Vizueta J, Smith EG, Nelson DR, Khraiwesh B, Qudeimat E, Salehi-Ashtiani K, Ortega A, Marshell A, Duarte CM, Burt JA. A high-quality genome assembly and annotation of the gray mangrove, Avicennia marina. G3 (Bethesda, Md.). 11. PMID 33561229 DOI: 10.1093/g3journal/jkaa025   
2021 Zhao L, Xu S, Han Z, Liu Q, Ke W, Liu A, Gao T. Chromosome-Level Genome Assembly and Annotation of a Sciaenid Fish, Argyrosomus Japonicus. Genome Biology and Evolution. PMID 33484557 DOI: 10.1093/gbe/evaa246   
2021 Kushwaha B, Pandey M, Das P, Joshi CG, Nagpure NS, Kumar R, Kumar D, Agarwal S, Srivastava S, Singh M, Sahoo L, Jayasankar P, Meher PK, Shah TM, Hinsu AT, et al. The genome of walking catfish Clarias magur (Hamilton, 1822) unveils the genetic basis that may have facilitated the development of environmental and terrestrial adaptation systems in air-breathing catfishes. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 33416875 DOI: 10.1093/dnares/dsaa031   
2021 Jo E, Lee SJ, Choi E, Kim J, Lee SG, Lee JH, Kim JH, Park H. Whole genome survey and microsatellite motif identification of Artemia franciscana. Bioscience Reports. PMID 33629105 DOI: 10.1042/BSR20203868   
2021 Chen L, Li B, Chen B, Li C, Zhou Z, Zhou T, Yang W, Xu P. Chromosome-level genome of Poropuntius huangchuchieni provides a diploid progenitor-like reference genome for the allotetraploid Cyprinus carpio. Molecular Ecology Resources. PMID 33624395 DOI: 10.1111/1755-0998.13365