David Posada, PhD - Publications

Biochemistry, Genetics and Immunology University of Vigo, Vigo, Galicia, Spain 
bioinformatics, population genetics, molecular evolution

118 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Posada D, Crandall KA. Felsenstein Phylogenetic Likelihood. Journal of Molecular Evolution. PMID 33438113 DOI: 10.1007/s00239-020-09982-w  0.501
2020 Liberles DA, Chang B, Geiler-Samerotte K, Goldman A, Hey J, Kaçar B, Meyer M, Murphy W, Posada D, Storfer A. Emerging Frontiers in the Study of Molecular Evolution. Journal of Molecular Evolution. PMID 32060574 DOI: 10.1007/S00239-020-09932-6  0.326
2020 Posada D. CellCoal: coalescent simulation of single-cell sequencing samples. Molecular Biology and Evolution. PMID 32027371 DOI: 10.1093/Molbev/Msaa025  0.346
2019 Darriba D, Posada D, Kozlov AM, Stamatakis A, Morel B, Flouri T. ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models. Molecular Biology and Evolution. PMID 31432070 DOI: 10.1093/Molbev/Msz189  0.33
2018 Escalona M, Rocha S, Posada D. Author Correction: A comparison of tools for the simulation of genomic next-generation sequencing data. Nature Reviews. Genetics. PMID 30283054 DOI: 10.1038/S41576-018-0058-2  0.324
2018 Duchemin W, Gence G, Arigon Chifolleau AM, Arvestad L, Bansal MS, Berry V, Boussau B, Chevenet F, Comte N, Davín AA, Dessimoz C, Dylus D, Hasic D, Mallo D, Planel R, ... Posada D, et al. RecPhyloXML - a format for reconciled gene trees. Bioinformatics (Oxford, England). PMID 29762653 DOI: 10.1093/Bioinformatics/Bty389  0.319
2018 Escalona M, Rocha S, Posada D. NGSphy: phylogenomic simulation of next-generation sequencing data. Bioinformatics (Oxford, England). PMID 29534152 DOI: 10.1093/Bioinformatics/Bty146  0.363
2017 de Oliveira Martins L, Posada D. Species Tree Estimation from Genome-Wide Data with guenomu. Methods in Molecular Biology (Clifton, N.J.). 1525: 461-478. PMID 27896732 DOI: 10.1007/978-1-4939-6622-6_18  0.355
2016 Mallo D, Posada D. Multilocus inference of species trees and DNA barcoding. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27481787 DOI: 10.1098/Rstb.2015.0335  0.384
2016 Escalona M, Rocha S, Posada D. A comparison of tools for the simulation of genomic next-generation sequencing data. Nature Reviews. Genetics. PMID 27320129 DOI: 10.1038/Nrg.2016.57  0.343
2016 de Oliveira Martins L, Posada D. Infinitely long branches and an informal test of common ancestry. Biology Direct. 11: 19. PMID 27055810 DOI: 10.1186/S13062-016-0120-Y  0.345
2016 Murgarella M, Puiu D, Novoa B, Figueras A, Posada D, Canchaya C. A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis. Plos One. 11: e0151561. PMID 26977809 DOI: 10.1371/Journal.Pone.0151561  0.331
2016 Rocha S, Perera A, Silva A, Posada D, Harris DJ. Evolutionary history ofTrachylepisskinks in the Seychelles islands: introgressive hybridization, morphological evolution and geographic structure Biological Journal of the Linnean Society. 119: 15-36. DOI: 10.1111/Bij.12803  0.37
2015 Mallo D, de Oliveira Martins L, Posada D. SimPhy: Phylogenomic Simulation of Gene, Locus and Species Trees. Systematic Biology. PMID 26526427 DOI: 10.1093/Sysbio/Syv082  0.404
2015 Posada D. Cancer Molecular Evolution. Journal of Molecular Evolution. 81: 81-3. PMID 26289731 DOI: 10.1007/S00239-015-9695-7  0.318
2015 Arenas M, Lopes JS, Beaumont MA, Posada D. CodABC: a computational framework to coestimate recombination, substitution, and molecular adaptation rates by approximate Bayesian computation. Molecular Biology and Evolution. 32: 1109-12. PMID 25577191 DOI: 10.1093/Molbev/Msu411  0.666
2015 Buhay JE, Crandall KA, Posada D. Nested clade phylogeographic analysis for conservation genetics Population Genetics For Animal Conservation. 80-103. DOI: 10.1017/CBO9780511626920.005  0.762
2014 De Oliveira Martins L, Mallo D, Posada D. A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction. Systematic Biology. PMID 25281847 DOI: 10.1093/Sysbio/Syu082  0.361
2014 Faria NR, Rambaut A, Suchard MA, Baele G, Bedford T, Ward MJ, Tatem AJ, Sousa JD, Arinaminpathy N, Pépin J, Posada D, Peeters M, Pybus OG, Lemey P. HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations. Science (New York, N.Y.). 346: 56-61. PMID 25278604 DOI: 10.1126/Science.1256739  0.325
2014 Fonseca MM, Harris DJ, Posada D. The inversion of the Control Region in three mitogenomes provides further evidence for an asymmetric model of vertebrate mtDNA replication. Plos One. 9: e106654. PMID 25268704 DOI: 10.1371/Journal.Pone.0106654  0.322
2014 Mallo D, De Oliveira Martins L, Posada D. Unsorted homology within locus and species trees. Systematic Biology. 63: 988-92. PMID 25077514 DOI: 10.1093/Sysbio/Syu050  0.384
2014 Arenas M, Posada D. Simulation of genome-wide evolution under heterogeneous substitution models and complex multispecies coalescent histories. Molecular Biology and Evolution. 31: 1295-301. PMID 24557445 DOI: 10.1093/Molbev/Msu078  0.675
2014 Santorum JM, Darriba D, Taboada GL, Posada D. jmodeltest.org: selection of nucleotide substitution models on the cloud. Bioinformatics (Oxford, England). 30: 1310-1. PMID 24451621 DOI: 10.1093/Bioinformatics/Btu032  0.308
2014 Fonseca MM, Harris DJ, Posada D. Origin and length distribution of unidirectional prokaryotic overlapping genes. G3 (Bethesda, Md.). 4: 19-27. PMID 24192837 DOI: 10.1534/G3.113.005652  0.326
2014 Lopes JS, Arenas M, Posada D, Beaumont MA. Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation. Heredity. 112: 255-64. PMID 24149652 DOI: 10.1038/Hdy.2013.101  0.389
2014 Mallo D, Martins LdO, Posada D. SimPhy: comprehensive simulation of gene, locus and species trees at the genome-wide level F1000research. 5. DOI: 10.7490/F1000Research.1096480.1  0.334
2013 Arenas M, Dos Santos HG, Posada D, Bastolla U. Protein evolution along phylogenetic histories under structurally constrained substitution models. Bioinformatics (Oxford, England). 29: 3020-8. PMID 24037213 DOI: 10.1093/Bioinformatics/Btt530  0.75
2013 Posada D. Phylogenetic models of molecular evolution: next-generation data, fit, and performance. Journal of Molecular Evolution. 76: 351-2. PMID 23695649 DOI: 10.1007/S00239-013-9566-Z  0.387
2013 Rocha S, Posada D, Harris DJ. Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands. Bmc Evolutionary Biology. 13: 3. PMID 23289814 DOI: 10.1186/1471-2148-13-3  0.363
2012 Martins LD, Posada D. Proving universal common ancestry with similar sequences. Trends in Evolutionary Biology. 4. PMID 23814665 DOI: 10.4081/Eb.2012.E5  0.315
2012 Andonov A, Coulthart MB, Pérez-Losada M, Crandall KA, Posada D, Padmore R, Giulivi A, Oger JJ, Peters AA, Dekaban GA. Insights into origins of Human T-cell Lymphotropic Virus Type 1 based on new strains from aboriginal people of Canada. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 12: 1822-30. PMID 22921499 DOI: 10.1016/J.Meegid.2012.07.015  0.527
2012 Fonseca MM, Rocha S, Posada D. Base-pairing versatility determines wobble sites in tRNA anticodons of vertebrate mitogenomes. Plos One. 7: e36605. PMID 22590575 DOI: 10.1371/Journal.Pone.0036605  0.303
2012 Abascal F, Posada D, Zardoya R. The evolution of the mitochondrial genetic code in arthropods revisited. Mitochondrial Dna. 23: 84-91. PMID 22397376 DOI: 10.3109/19401736.2011.653801  0.354
2011 Arbiza L, Patricio M, Dopazo H, Posada D. Genome-wide heterogeneity of nucleotide substitution model fit. Genome Biology and Evolution. 3: 896-908. PMID 21824869 DOI: 10.1093/Gbe/Evr080  0.389
2011 Martin DP, Lemey P, Posada D. Analysing recombination in nucleotide sequences. Molecular Ecology Resources. 11: 943-55. PMID 21592314 DOI: 10.1111/J.1755-0998.2011.03026.X  0.448
2011 Pérez-Losada M, Jobes DV, Sinangil F, Crandall KA, Arenas M, Posada D, Berman PW. Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand. Plos One. 6: e16902. PMID 21423744 DOI: 10.1371/Journal.Pone.0016902  0.708
2011 Tazi L, Imamichi H, Hirschfeld S, Metcalf JA, Orsega S, Pérez-Losada M, Posada D, Lane HC, Crandall KA. HIV-1 infected monozygotic twins: a tale of two outcomes. Bmc Evolutionary Biology. 11: 62. PMID 21385447 DOI: 10.1186/1471-2148-11-62  0.546
2011 Romero A, Dios S, Poisa-Beiro L, Costa MM, Posada D, Figueras A, Novoa B. Individual sequence variability and functional activities of fibrinogen-related proteins (FREPs) in the Mediterranean mussel (Mytilus galloprovincialis) suggest ancient and complex immune recognition models in invertebrates. Developmental and Comparative Immunology. 35: 334-44. PMID 21034769 DOI: 10.1016/J.Dci.2010.10.007  0.334
2011 Rocha S, Harris DJ, Posada D. Cryptic diversity within the endemic prehensile-tailed gecko Urocotyledon inexpectata across the Seychelles Islands: Patterns of phylogeographical structure and isolation at the multilocus level Biological Journal of the Linnean Society. 104: 177-191. DOI: 10.1111/J.1095-8312.2011.01710.X  0.385
2010 Arenas M, Posada D. Computational design of centralized HIV-1 genes. Current Hiv Research. 8: 613-21. PMID 21054255 DOI: 10.2174/157016210794088263  0.664
2010 Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics (Oxford, England). 26: 2462-3. PMID 20798170 DOI: 10.1093/Bioinformatics/Btq467  0.354
2010 Arenas M, Patricio M, Posada D, Valiente G. Characterization of phylogenetic networks with NetTest. Bmc Bioinformatics. 11: 268. PMID 20487540 DOI: 10.1186/1471-2105-11-268  0.643
2010 Glez-Peña D, Gómez-Blanco D, Reboiro-Jato M, Fdez-Riverola F, Posada D. ALTER: program-oriented conversion of DNA and protein alignments. Nucleic Acids Research. 38: W14-8. PMID 20439312 DOI: 10.1093/Nar/Gkq321  0.309
2010 Arenas M, Posada D. The effect of recombination on the reconstruction of ancestral sequences. Genetics. 184: 1133-9. PMID 20124027 DOI: 10.1534/Genetics.109.113423  0.681
2010 Arenas M, Posada D. Coalescent simulation of intracodon recombination. Genetics. 184: 429-37. PMID 19933876 DOI: 10.1534/Genetics.109.109736  0.686
2010 Pérez-Losada M, Jobes DV, Sinangil F, Crandall KA, Posada D, Berman PW. Phylodynamics of HIV-1 from a phase-III AIDS vaccine trial in North America. Molecular Biology and Evolution. 27: 417-25. PMID 19864468 DOI: 10.1093/Molbev/Msp254  0.539
2010 Pascual S, Villalba A, Abollo E, Garci M, González AF, Nombela M, Posada D, Guerra A. The mussel Xenostrobus securis: A well-established alien invader in the Ria de Vigo (Spain, NE Atlantic) Biological Invasions. 12: 2091-2103. DOI: 10.1007/S10530-009-9611-4  0.344
2009 Kosakovsky Pond SL, Posada D, Stawiski E, Chappey C, Poon AF, Hughes G, Fearnhill E, Gravenor MB, Leigh Brown AJ, Frost SD. An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1. Plos Computational Biology. 5: e1000581. PMID 19956739 DOI: 10.1371/Journal.Pcbi.1000581  0.394
2009 Pérez-Losada M, Posada D, Arenas M, Jobes DV, Sinangil F, Berman PW, Crandall KA. Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial. Retrovirology. 6: 67. PMID 19604405 DOI: 10.1186/1742-4690-6-67  0.695
2009 Abrantes J, Posada D, Guillon P, Esteves PJ, Le Pendu J. Widespread gene conversion of alpha-2-fucosyltransferase genes in mammals. Journal of Molecular Evolution. 69: 22-31. PMID 19533213 DOI: 10.1007/S00239-009-9239-0  0.313
2009 Posada D. Bioinformatics for DNA sequence analysis. Preface. Methods in Molecular Biology (Clifton, N.J.). 537: vii-viii. PMID 19514139 DOI: 10.1007/978-1-59745-251-9  0.334
2009 Abascal F, Zardoya R, Posada D. Genetic code prediction for metazoan mitochondria with GenDecoder. Methods in Molecular Biology (Clifton, N.J.). 537: 233-42. PMID 19378147 DOI: 10.1007/978-1-59745-251-9_11  0.367
2009 Posada D. Selection of models of DNA evolution with jModelTest. Methods in Molecular Biology (Clifton, N.J.). 537: 93-112. PMID 19378141 DOI: 10.1007/978-1-59745-251-9_5  0.339
2009 Iglesias Briones MJ, Morán P, Posada D. Are the sexual, somatic and genetic characters enough to solve nomenclatural problems in lumbricid taxonomy? Soil Biology and Biochemistry. 41: 2257-2271. DOI: 10.1016/J.Soilbio.2009.07.008  0.391
2009 Sotelo G, Posada D, Morán P. Low-mitochondrial diversity and lack of structure in the velvet swimming crab Necora puber along the Galician coast Marine Biology. 156: 1039-1048. DOI: 10.1007/S00227-009-1148-7  0.376
2008 Arenas M, Valiente G, Posada D. Characterization of reticulate networks based on the coalescent with recombination. Molecular Biology and Evolution. 25: 2517-20. PMID 18927089 DOI: 10.1093/Molbev/Msn219  0.632
2008 Woolley SM, Posada D, Crandall KA. A comparison of phylogenetic network methods using computer simulation. Plos One. 3: e1913. PMID 18398452 DOI: 10.1371/Journal.Pone.0001913  0.532
2008 Posada D. jModelTest: phylogenetic model averaging. Molecular Biology and Evolution. 25: 1253-6. PMID 18397919 DOI: 10.1093/Molbev/Msn083  0.342
2008 Carvajal-Rodríguez A, Posada D, Pérez-Losada M, Keller E, Abrams EJ, Viscidi RP, Crandall KA. Disease progression and evolution of the HIV-1 env gene in 24 infected infants. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 8: 110-20. PMID 18249158 DOI: 10.1016/J.Meegid.2007.10.009  0.552
2008 Sotelo G, Morán P, Fernández L, Posada D. Genetic variation of the spiny spider crab Maja brachydactyla in the northeastern Atlantic Marine Ecology Progress Series. 362: 211-223. DOI: 10.3354/Meps07433  0.361
2008 Sotelo G, Morán P, Posada D. Genetic identification of the northeastern Atlantic spiny spider crab as Maja brachydactyla Balss, 1922 Journal of Crustacean Biology. 28: 76-81. DOI: 10.1651/07-2875R.1  0.334
2008 Campos JL, Posada D, Morán P. Introgression and genetic structure in northern Spanish Atlantic salmon (Salmo salar L.) populations according to mtDNA data Conservation Genetics. 9: 157-169. DOI: 10.1007/S10592-007-9318-Y  0.361
2007 Arenas M, Posada D. Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography. Bmc Bioinformatics. 8: 458. PMID 18028540 DOI: 10.1186/1471-2105-8-458  0.684
2007 Quesada H, Posada D, Caballero A, Morán P, Rolán-Alvarez E. Phylogenetic evidence for multiple sympatric ecological diversification in a marine snail. Evolution; International Journal of Organic Evolution. 61: 1600-12. PMID 17598743 DOI: 10.1111/J.1558-5646.2007.00135.X  0.392
2007 Boni MF, Posada D, Feldman MW. An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics. 176: 1035-47. PMID 17409078 DOI: 10.1534/Genetics.106.068874  0.36
2007 Carvajal-Rodríguez A, Crandall KA, Posada D. Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 7: 476-83. PMID 17369105 DOI: 10.1016/J.Meegid.2007.02.001  0.508
2007 Sierra M, Thomson MM, Posada D, Pérez L, Aragonés C, González Z, Pérez J, Casado G, Nájera R. Identification of 3 phylogenetically related HIV-1 BG intersubtype circulating recombinant forms in Cuba. Journal of Acquired Immune Deficiency Syndromes (1999). 45: 151-60. PMID 17356464 DOI: 10.1097/Qai.0B013E318046Ea47  0.373
2007 Bello G, Casado C, García S, Rodríguez C, del Romero J, Carvajal-Rodriguez A, Posada D, López-Galíndez C. Lack of temporal structure in the short term HIV-1 evolution within asymptomatic naïve patients. Virology. 362: 294-303. PMID 17275055 DOI: 10.1016/J.Virol.2006.11.039  0.369
2007 Abascal F, Posada D, Zardoya R. MtArt: a new model of amino acid replacement for Arthropoda. Molecular Biology and Evolution. 24: 1-5. PMID 17043087 DOI: 10.1093/Molbev/Msl136  0.323
2007 Campos JL, Posada D, Caballero P, Morán P. Spatio-temporal genetic variability in sea trout (Salmo trutta) populations from north-western Spain Freshwater Biology. 52: 510-524. DOI: 10.1111/J.1365-2427.2006.01721.X  0.349
2007 Campos J, Morán P, Posada D, Caballero P. Spatio-temporal genetic variability of sea trout populations in Northwestern Spain Aquaculture. 272: S247. DOI: 10.1016/J.Aquaculture.2007.07.039  0.313
2007 Sotelo G, Morán P, Posada D. Identification and characterization of microsatellite loci in the spiny spider crab Maja brachydactyla Conservation Genetics. 8: 245-247. DOI: 10.1007/S10592-006-9141-X  0.329
2006 Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD. GARD: a genetic algorithm for recombination detection. Bioinformatics (Oxford, England). 22: 3096-8. PMID 17110367 DOI: 10.1093/Bioinformatics/Btl474  0.418
2006 Jobes DV, Daoust M, Nguyen VT, Padua A, Sinangil F, Pérez-Losada M, Crandall KA, Oliphant T, Posada D, Rambaut A, Fuchs J, Berman PW. Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a Phase 3 HIV vaccine efficacy trial. Aids Research and Human Retroviruses. 22: 968-78. PMID 17067266 DOI: 10.1089/Aid.2006.22.968  0.579
2006 Posada D. ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online. Nucleic Acids Research. 34: W700-3. PMID 16845102 DOI: 10.1093/Nar/Gkl042  0.321
2006 Abascal F, Zardoya R, Posada D. GenDecoder: genetic code prediction for metazoan mitochondria. Nucleic Acids Research. 34: W389-93. PMID 16845034 DOI: 10.1093/Nar/Gkl044  0.368
2006 Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD. Automated phylogenetic detection of recombination using a genetic algorithm. Molecular Biology and Evolution. 23: 1891-901. PMID 16818476 DOI: 10.1093/Molbev/Msl051  0.435
2006 Abascal F, Posada D, Knight RD, Zardoya R. Parallel evolution of the genetic code in arthropod mitochondrial genomes. Plos Biology. 4: e127. PMID 16620150 DOI: 10.1371/Journal.Pbio.0040127  0.347
2006 Coulthart MB, Posada D, Crandall KA, Dekaban GA. On the phylogenetic placement of human T cell leukemia virus type 1 sequences associated with an Andean mummy. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 6: 91-6. PMID 16503510 DOI: 10.1016/J.Meegid.2005.02.001  0.555
2006 Carvajal-Rodríguez A, Crandall KA, Posada D. Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method. Molecular Biology and Evolution. 23: 817-27. PMID 16452117 DOI: 10.1093/Molbev/Msj102  0.577
2006 Posada D, Crandall KA, Templeton AR. Nested clade analysis statistics Molecular Ecology Notes. 6: 590-593. DOI: 10.1111/J.1471-8286.2006.01368.X  0.687
2006 Campos JL, Posada D, Morán P. Genetic variation at MHC, mitochondrial and microsatellite loci in isolated populations of Brown trout (Salmo trutta) Conservation Genetics. 7: 515-530. DOI: 10.1007/S10592-005-9063-Z  0.359
2005 Martin DP, van der Walt E, Posada D, Rybicki EP. The evolutionary value of recombination is constrained by genome modularity. Plos Genetics. 1: e51. PMID 16244707 DOI: 10.1371/Journal.Pgen.0010051  0.341
2005 Thomson MM, Casado G, Posada D, Sierra M, Nájera R. Identification of a novel HIV-1 complex circulating recombinant form (CRF18_cpx) of Central African origin in Cuba. Aids (London, England). 19: 1155-63. PMID 15990568 DOI: 10.1097/01.Aids.0000176215.95119.1D  0.37
2005 Posada D, Maxwell TJ, Templeton AR. TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees. Bioinformatics (Oxford, England). 21: 2130-2. PMID 15681571 DOI: 10.1093/Bioinformatics/Bti293  0.563
2005 Martin DP, Posada D, Crandall KA, Williamson C. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. Aids Research and Human Retroviruses. 21: 98-102. PMID 15665649 DOI: 10.1089/Aid.2005.21.98  0.529
2005 Tsaousis AD, Martin DP, Ladoukakis ED, Posada D, Zouros E. Widespread recombination in published animal mtDNA sequences. Molecular Biology and Evolution. 22: 925-33. PMID 15647518 DOI: 10.1093/Molbev/Msi084  0.357
2005 Abascal F, Zardoya R, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics (Oxford, England). 21: 2104-5. PMID 15647292 DOI: 10.1093/Bioinformatics/Bti263  0.342
2005 Bos DH, Posada D. Using models of nucleotide evolution to build phylogenetic trees. Developmental and Comparative Immunology. 29: 211-27. PMID 15572070 DOI: 10.1016/J.Dci.2004.07.007  0.383
2005 Martin DP, Williamson C, Posada D. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics (Oxford, England). 21: 260-2. PMID 15377507 DOI: 10.1093/Bioinformatics/Bth490  0.359
2005 Templeton AR, Maxwell T, Posada D, Stengård JH, Boerwinkle E, Sing CF. Tree scanning: a method for using haplotype trees in phenotype/genotype association studies. Genetics. 169: 441-53. PMID 15371364 DOI: 10.1534/Genetics.104.030080  0.55
2004 Posada D, Buckley TR. Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. Systematic Biology. 53: 793-808. PMID 15545256 DOI: 10.1080/10635150490522304  0.347
2004 Tarjuelo I, Posada D, Crandall KA, Pascual M, Turon X. Phylogeography and speciation of colour morphs in the colonial ascidian Pseudodistoma crucigaster. Molecular Ecology. 13: 3125-36. PMID 15367125 DOI: 10.1111/J.1365-294X.2004.02306.X  0.585
2004 Rambaut A, Posada D, Crandall KA, Holmes EC. The causes and consequences of HIV evolution. Nature Reviews. Genetics. 5: 52-61. PMID 14708016 DOI: 10.1038/Nrg1246  0.517
2003 Posada D. Using MODELTEST and PAUP* to select a model of nucleotide substitution. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 6.5. PMID 18428705 DOI: 10.1002/0471250953.Bi0605S00  0.344
2003 Pfenninger M, Posada D, Magnin F. Evidence for survival of Pleistocene climatic changes in Northern refugia by the land snail Trochoidea geyeri (Soós 1926) (Helicellinae, Stylommatophora). Bmc Evolutionary Biology. 3: 8. PMID 12720575 DOI: 10.1186/1471-2148-3-8  0.343
2003 Posada D, Wiuf C. Simulating haplotype blocks in the human genome. Bioinformatics (Oxford, England). 19: 289-90. PMID 12538254 DOI: 10.1093/Bioinformatics/19.2.289  0.345
2002 Posada D, Crandall KA, Holmes EC. Recombination in evolutionary genomics. Annual Review of Genetics. 36: 75-97. PMID 12429687 DOI: 10.1146/Annurev.Genet.36.040202.111115  0.562
2002 Pfenninger M, Posada D. Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact. Evolution; International Journal of Organic Evolution. 56: 1776-88. PMID 12389722 DOI: 10.1554/0014-3820(2002)056[1776:Photls]2.0.Co;2  0.38
2002 Posada D. Evaluation of methods for detecting recombination from DNA sequences: empirical data. Molecular Biology and Evolution. 19: 708-17. PMID 11961104 DOI: 10.1093/Oxfordjournals.Molbev.A004129  0.373
2002 Posada D, Crandall KA. The effect of recombination on the accuracy of phylogeny estimation. Journal of Molecular Evolution. 54: 396-402. PMID 11847565 DOI: 10.1007/S00239-001-0034-9  0.591
2002 Clement M, Snell Q, Walke P, Posada D, Crandall K. TCS: Estimating gene genealogies Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2002. 184. DOI: 10.1109/IPDPS.2002.1016585  0.462
2001 Posada D, Crandall KA. Selecting the best-fit model of nucleotide substitution. Systematic Biology. 50: 580-601. PMID 12116655 DOI: 10.1080/10635150118469  0.55
2001 Posada D, Crandall KA. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proceedings of the National Academy of Sciences of the United States of America. 98: 13757-62. PMID 11717435 DOI: 10.1073/Pnas.241370698  0.577
2001 Posada D. Unveiling the molecular clock in the presence of recombination. Molecular Biology and Evolution. 18: 1976-8. PMID 11557803 DOI: 10.1093/Oxfordjournals.Molbev.A003738  0.404
2001 Posada D. The effect of branch length variation on the selection of models of molecular evolution. Journal of Molecular Evolution. 52: 434-44. PMID 11443347 DOI: 10.1007/S002390010173  0.354
2001 Posada D, Crandall KA. Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1). Molecular Biology and Evolution. 18: 897-906. PMID 11371577 DOI: 10.1093/Oxfordjournals.Molbev.A003890  0.594
2001 Posada D, Crandall K. Simple (wrong) models for complex trees: a case from retroviridae. Molecular Biology and Evolution. 18: 271-5. PMID 11158387 DOI: 10.1093/Oxfordjournals.Molbev.A003802  0.475
2001 Posada D, Crandall KA. Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology & Evolution. 16: 37-45. PMID 11146143 DOI: 10.1016/S0169-5347(00)02026-7  0.544
2001 Tarjuelo I, Posada D, Crandall KA, Pascual M, Turon X. Cryptic species of Clavelina (Ascidiacea) in two different habitats: Harbours and rocky littoral zones in the northwestern Mediterranean Marine Biology. 139: 455-462. DOI: 10.1007/S002270100587  0.557
2000 Schwenk K, Posada D, Hebert PD. Molecular systematics of European Hyalodaphnia: the role of contemporary hybridization in ancient species. Proceedings. Biological Sciences / the Royal Society. 267: 1833-42. PMID 11052533 DOI: 10.1098/Rspb.2000.1218  0.37
2000 Clement M, Posada D, Crandall KA. TCS: a computer program to estimate gene genealogies. Molecular Ecology. 9: 1657-9. PMID 11050560 DOI: 10.1046/J.1365-294X.2000.01020.X  0.487
2000 Posada D, Crandall KA, Templeton AR. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology. 9: 487-8. PMID 10736051 DOI: 10.1046/J.1365-294X.2000.00887.X  0.637
2000 Posada D, Crandall KA, Nguyen M, Demma JC, Viscidi RP. Population genetics of the porB gene of Neisseria gonorrhoeae: different dynamics in different homology groups. Molecular Biology and Evolution. 17: 423-36. PMID 10723743 DOI: 10.1093/Oxfordjournals.Molbev.A026322  0.585
1999 Crandall KA, Vasco DA, Posada D, Imamichi H. Advances in understanding the evolution of HIV. Aids (London, England). 13: S39-47. PMID 10885761  0.439
1999 Vila C, Amorim IR, Leonard JA, Posada D, Castroviejo J, Petrucci-Fonseca F, Crandall KA, Ellegren H, Wayne RK. Mitochondrial DNA phylogeography and population history of the grey wolf canis lupus Molecular Ecology. 8: 2089-103. PMID 10632860 DOI: 10.1046/J.1365-294X.1999.00825.X  0.562
1999 Crandall KA, Posada D, Vasco D. Effective population sizes: Missing measures and missing concepts Animal Conservation. 2: 317-319. DOI: 10.1111/J.1469-1795.1999.Tb00078.X  0.524
1998 Posada D, Crandall KA. MODELTEST: testing the model of DNA substitution. Bioinformatics (Oxford, England). 14: 817-8. PMID 9918953 DOI: 10.1093/Bioinformatics/14.9.817  0.508
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