Peter E. Midford - Publications

Affiliations: 
NESCent, Durham, NC, United States 
Area:
Comparative Methods, Behavior

24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Karp PD, Ivanova N, Krummenacker M, Kyrpides N, Latendresse M, Midford P, Ong WK, Paley S, Seshadri R. A Comparison of Microbial Genome Web Portals. Frontiers in Microbiology. 10: 208. PMID 30853946 DOI: 10.3389/Fmicb.2019.00208  0.36
2017 Karp PD, Billington R, Caspi R, Fulcher CA, Latendresse M, Kothari A, Keseler IM, Krummenacker M, Midford PE, Ong Q, Ong WK, Paley SM, Subhraveti P. The BioCyc collection of microbial genomes and metabolic pathways. Briefings in Bioinformatics. PMID 29447345 DOI: 10.1093/Bib/Bbx085  0.369
2017 Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD. The MetaCyc database of metabolic pathways and enzymes. Nucleic Acids Research. PMID 29059334 DOI: 10.1093/Nar/Gkx935  0.334
2015 Thessen AE, Bunker DE, Buttigieg PL, Cooper LD, Dahdul WM, Domisch S, Franz NM, Jaiswal P, Lawrence-Dill CJ, Midford PE, Mungall CJ, Ramírez MJ, Specht CD, Vogt L, Vos RA, et al. Emerging semantics to link phenotype and environment. Peerj. 3: e1470. PMID 26713234 DOI: 10.7717/Peerj.1470  0.406
2015 Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD, McTavish EJ, ... Midford PE, et al. Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences of the United States of America. PMID 26385966 DOI: 10.1073/Pnas.1423041112  0.714
2015 Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Midford PE, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033  0.422
2014 Comas LH, Callahan HS, Midford PE. Patterns in root traits of woody species hosting arbuscular and ectomycorrhizas: implications for the evolution of belowground strategies. Ecology and Evolution. 4: 2979-90. PMID 25247056 DOI: 10.1002/Ece3.1147  0.302
2014 Walls RL, Deck J, Guralnick R, Baskauf S, Beaman R, Blum S, Bowers S, Buttigieg PL, Davies N, Endresen D, Gandolfo MA, Hanner R, Janning A, Krishtalka L, Matsunaga A, ... Midford P, et al. Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies. Plos One. 9: e89606. PMID 24595056 DOI: 10.1371/Journal.Pone.0089606  0.443
2013 Midford PE, Dececchi TA, Balhoff JP, Dahdul WM, Ibrahim N, Lapp H, Lundberg JG, Mabee PM, Sereno PC, Westerfield M, Vision TJ, Blackburn DC. The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. Journal of Biomedical Semantics. 4: 34. PMID 24267744 DOI: 10.1186/2041-1480-4-34  0.435
2013 Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, ... ... Midford PE, et al. Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. Bmc Bioinformatics. 14: 158. PMID 23668630 DOI: 10.1186/1471-2105-14-158  0.628
2013 Davis MP, Midford PE, Maddison W. Exploring power and parameter estimation of the BiSSE method for analyzing species diversification. Bmc Evolutionary Biology. 13: 38. PMID 23398853 DOI: 10.1186/1471-2148-13-38  0.567
2012 Mabee BP, Balhoff JP, Dahdul WM, Lapp H, Midford PE, Vision TJ, Westerfield M. 500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton. Zeitschrift Fur Angewandte Ichthyologie = Journal of Applied Ichthyology. 28: 300-305. PMID 22736877 DOI: 10.1111/J.1439-0426.2012.01985.X  0.4
2012 Vos RA, Balhoff JP, Caravas JA, Holder MT, Lapp H, Maddison WP, Midford PE, Priyam A, Sukumaran J, Xia X, Stoltzfus A. NeXML: rich, extensible, and verifiable representation of comparative data and metadata. Systematic Biology. 61: 675-89. PMID 22357728 DOI: 10.1093/Sysbio/Sys025  0.705
2010 Dahdul WM, Lundberg JG, Midford PE, Balhoff JP, Lapp H, Vision TJ, Haendel MA, Westerfield M, Mabee PM. The teleost anatomy ontology: anatomical representation for the genomics age. Systematic Biology. 59: 369-83. PMID 20547776 DOI: 10.1093/Sysbio/Syq013  0.437
2010 Dahdul WM, Balhoff JP, Engeman J, Grande T, Hilton EJ, Kothari C, Lapp H, Lundberg JG, Midford PE, Vision TJ, Westerfield M, Mabee PM. Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature. Plos One. 5: e10708. PMID 20505755 DOI: 10.1371/Journal.Pone.0010708  0.447
2010 Balhoff JP, Dahdul WM, Kothari CR, Lapp H, Lundberg JG, Mabee P, Midford PE, Westerfield M, Vision TJ. Phenex: ontological annotation of phenotypic diversity. Plos One. 5: e10500. PMID 20463926 DOI: 10.1371/Journal.Pone.0010500  0.457
2010 Midford PE, Balhoff JP, Dahdul W, Kothari CR, Lapp H, Lundberg J, Mabee P, Westerfield M. The Teleost Taxonomy Ontology Nature Precedings. DOI: 10.1038/Npre.2010.4629.1  0.355
2010 Midford P. Phylontal: Using Phylogenies to Align Phenotype Ontologies Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.4628.1  0.362
2008 O'Meara B, Alfaro M, Bell C, Bolker B, Butler M, Cowan P, Vienne Dd, Desper R, Felsenstein J, Harmon L, Heibl C, Hipp A, Hunt G, Jombart T, Kembel S, ... ... Midford P, et al. Comparative methods in R hackathon Nature Precedings. DOI: 10.1038/Npre.2008.2126.1  0.671
2007 Maddison WP, Midford PE, Otto SP. Estimating a binary character's effect on speciation and extinction. Systematic Biology. 56: 701-10. PMID 17849325 DOI: 10.1080/10635150701607033  0.558
2007 Ramírez MJ, Coddington JA, Maddison WP, Midford PE, Prendini L, Miller J, Griswold CE, Hormiga G, Sierwald P, Scharff N, Benjamin SP, Wheeler WC. Linking of digital images to phylogenetic data matrices using a morphological ontology. Systematic Biology. 56: 283-94. PMID 17464883 DOI: 10.1080/10635150701313848  0.606
2007 Ives AR, Midford PE, Garland T. Within-species variation and measurement error in phylogenetic comparative methods. Systematic Biology. 56: 252-70. PMID 17464881 DOI: 10.1080/10635150701313830  0.314
2000 Midford PE, Hailman JP, Woolfenden GE. Social learning of a novel foraging patch in families of free-living Florida scrub-jays. Animal Behaviour. 59: 1199-1207. PMID 10877899 DOI: 10.1006/Anbe.1999.1419  0.576
1999 Garland T, Midford PE, Ives AR. An introduction to phylogenetically based statistical methods, with a new method for confidence intervals on ancestral values American Zoologist. 39: 374-388. DOI: 10.1093/Icb/39.2.374  0.42
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