Karen A. Cranston, PhD - Publications

Biodiversity Synthesis Center Field Museum of Natural History, Chicago, IL, United States 
phylogenetic methods, computational biology

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 McTavish EJ, Drew BT, Redelings B, Cranston KA. How and Why to Build a Unified Tree of Life. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28980328 DOI: 10.1002/Bies.201700114  0.405
2017 Rees JA, Cranston K. Automated assembly of a reference taxonomy for phylogenetic data synthesis Biodiversity Data Journal. 5. PMID 28765728 DOI: 10.3897/Bdj.5.E12581  0.349
2017 Wilson G, Bryan J, Cranston K, Kitzes J, Nederbragt L, Teal TK. Good enough practices in scientific computing. Plos Computational Biology. 13: e1005510. PMID 28640806 DOI: 10.1371/Journal.Pcbi.1005510  0.401
2017 Stoltzfus A, Rosenberg M, Lapp H, Budd A, Cranston K, Pontelli E, Oliver S, Vos RA. Community and Code: Nine Lessons from Nine NESCent Hackathons F1000research. 6: 786. DOI: 10.12688/F1000Research.11429.1  0.376
2016 Katz DS, Choi ST, Wilkins-Diehr N, Hong NC, Venters CC, Howison J, Seinstra F, Jones M, Cranston KA, Clune TL, Val-Borro Md, Littauer R. Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3) Journal of Open Research Software. 4: 37. DOI: 10.5334/Jors.118  0.364
2015 Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD, McTavish EJ, ... ... Cranston KA, et al. Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences of the United States of America. PMID 26385966 DOI: 10.1073/Pnas.1423041112  0.485
2015 McTavish EJ, Hinchliff CE, Allman JF, Brown JW, Cranston KA, Holder MT, Rees JA, Smith SA. Phylesystem: a git-based data store for community-curated phylogenetic estimates. Bioinformatics (Oxford, England). PMID 25940563 DOI: 10.1093/Bioinformatics/Btv276  0.487
2015 Ksepka DT, Parham JF, Allman JF, Benton MJ, Carrano MT, Cranston KA, Donoghue PC, Head JJ, Hermsen EJ, Irmis RB, Joyce WG, Kohli M, Lamm KD, Leehr D, PatanĂ© JL, et al. The Fossil Calibration Database-A New Resource for Divergence Dating. Systematic Biology. PMID 25922515 DOI: 10.1093/Sysbio/Syv025  0.411
2015 Teal TK, Cranston KA, Lapp H, White E, Wilson G, Ram K, Pawlik A. Data Carpentry: Workshops to Increase Data Literacy for Researchers International Journal of Digital Curation. 10: 135-143. DOI: 10.2218/Ijdc.V10I1.351  0.426
2014 Vision TJ, Cranston K. Open data for evolutionary synthesis: an introduction to the NESCent collection. Scientific Data. 1: 140030. PMID 25977787 DOI: 10.1038/Sdata.2014.30  0.464
2014 Cranston K, Harmon LJ, O'Leary MA, Lisle C. Best practices for data sharing in phylogenetic research. Plos Currents. 6. PMID 24987572 DOI: 10.1371/Currents.Tol.Bf01Eff4A6B60Ca4825C69293Dc59645  0.49
2013 Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, et al. Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. Bmc Bioinformatics. 14: 158. PMID 23668630 DOI: 10.1186/1471-2105-14-158  0.651
2013 Rodrigo A, Alberts S, Cranston K, Kingsolver J, Lapp H, McClain C, Smith R, Vision T, Weintraub J, Wiegmann B. Science incubators: synthesis centers and their role in the research ecosystem. Plos Biology. 11: e1001468. PMID 23335860 DOI: 10.1371/Journal.Pbio.1001468  0.335
2011 Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, ... ... Cranston KA, et al. The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Frontiers in Plant Science. 2: 34. PMID 22645531 DOI: 10.3389/Fpls.2011.00034  0.634
2011 Evans ME, Hearn DJ, Theiss KE, Cranston K, Holsinger KE, Donoghue MJ. Extreme environments select for reproductive assurance: evidence from evening primroses (Oenothera). The New Phytologist. 191: 555-63. PMID 21449951 DOI: 10.1111/J.1469-8137.2011.03697.X  0.509
2010 Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, et al. Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 430-42. PMID 20487382 DOI: 10.1111/J.1365-313X.2010.04251.X  0.368
2010 Cranston KA, Hurwitz B, Sanderson MJ, Ware D, Wing RA, Stein L. Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae) Systematic Botany. 35: 512-523. DOI: 10.1600/036364410792495872  0.635
2009 Cranston KA, Hurwitz B, Ware D, Stein L, Wing RA. Species trees from highly incongruent gene trees in rice. Systematic Biology. 58: 489-500. PMID 20525603 DOI: 10.1093/Sysbio/Syp054  0.446
2008 Sanderson MJ, Boss D, Chen D, Cranston KA, Wehe A. The PhyLoTA Browser: processing GenBank for molecular phylogenetics research. Systematic Biology. 57: 335-46. PMID 18570030 DOI: 10.1080/10635150802158688  0.586
2007 Cranston KA, Rannala B. Summarizing a posterior distribution of trees using agreement subtrees. Systematic Biology. 56: 578-90. PMID 17654363 DOI: 10.1080/10635150701485091  0.598
2005 Cranston K, Rannala B. Closing the gap between rocks and clocks Heredity. 94: 461-462. PMID 15714220 DOI: 10.1038/Sj.Hdy.6800644  0.608
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