Michael J. Sanderson, PhD - Publications

Affiliations: 
Ecology and Evolutionary Biology University of Arizona, Tucson, AZ 
Website:
http://loco.biosci.arizona.edu/

91 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Sanderson MJ, et al. Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 30291357 DOI: 10.1038/S41588-018-0261-2  0.8
2018 Dobrin BH, Zwickl DJ, Sanderson MJ. The prevalence of terraced treescapes in analyses of phylogenetic data sets. Bmc Evolutionary Biology. 18: 46. PMID 29618314 DOI: 10.1186/S12862-018-1162-9  0.8
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Sanderson MJ, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 29358651 DOI: 10.1038/S41588-018-0040-0  0.8
2015 Badyaev AV, Morrison ES, Belloni V, Sanderson MJ. Tradeoff between robustness and elaboration in carotenoid networks produces cycles of avian color diversification. Biology Direct. 10: 45. PMID 26289047 DOI: 10.1186/S13062-015-0073-6  1
2015 Sanderson MJ, Copetti D, Búrquez A, Bustamante E, Charboneau JL, Eguiarte LE, Kumar S, Lee HO, Lee J, McMahon M, Steele K, Wing R, Yang TJ, Zwickl D, Wojciechowski MF. Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat. American Journal of Botany. 102: 1115-27. PMID 26199368 DOI: 10.3732/Ajb.1500184  1
2015 Sanderson MJ. Back to the past: a new take on the timing of flowering plant diversification. The New Phytologist. 207: 257-9. PMID 26096201 DOI: 10.1111/Nph.13462  1
2015 Sanderson MJ, McMahon MM, Stamatakis A, Zwickl DJ, Steel M. Impacts of terraces on phylogenetic inference. Systematic Biology. PMID 25999395 DOI: 10.1093/Sysbio/Syv024  1
2015 Donoghue MJ, Sanderson MJ. Confluence, synnovation, and depauperons in plant diversification. The New Phytologist. 207: 260-74. PMID 25778694 DOI: 10.1111/Nph.13367  1
2015 McMahon MM, Deepak A, Fernández-Baca D, Boss D, Sanderson MJ. STBase: one million species trees for comparative biology. Plos One. 10: e0117987. PMID 25679219 DOI: 10.1371/Journal.Pone.0117987  1
2014 Sanderson MJ. Ceiba: scalable visualization of phylogenies and 2D/3D image collections. Bioinformatics (Oxford, England). 30: 2506-7. PMID 24813216 DOI: 10.1093/Bioinformatics/Btu315  1
2014 Zwickl DJ, Stein JC, Wing RA, Ware D, Sanderson MJ. Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3. Systematic Biology. 63: 645-59. PMID 24721692 DOI: 10.1093/Sysbio/Syu027  1
2014 Shi T, Huang H, Sanderson MJ, Tax FE. Evolutionary dynamics of leucine-rich repeat receptor-like kinases and related genes in plants: A phylogenomic approach Journal of Integrative Plant Biology. 56: 648-662. DOI: 10.1111/Jipb.12188  1
2014 Deepak A, Fernández-Baca D, Tirthapura S, Sanderson MJ, McMahon MM. EvoMiner: frequent subtree mining in phylogenetic databases Knowledge and Information Systems. 41: 559-590. DOI: 10.1007/S10115-013-0676-0  1
2013 Steel M, Linz S, Huson DH, Sanderson MJ. Identifying a species tree subject to random lateral gene transfer. Journal of Theoretical Biology. 322: 81-93. PMID 23340439 DOI: 10.1016/J.Jtbi.2013.01.009  1
2013 Marazzi B, Conti E, Sanderson MJ, McMahon MM, Bronstein JL. Diversity and evolution of a trait mediating ant-plant interactions: insights from extrafloral nectaries in Senna (Leguminosae). Annals of Botany. 111: 1263-75. PMID 23104672 DOI: 10.1093/Aob/Mcs226  1
2013 Donoghue MJ, Sanderson MJ. Complexity and Homology in Plants Homology: the Hierarchical Basis of Comparative Biology. 393-421. DOI: 10.1016/B978-0-08-057430-1.50018-4  1
2012 Marazzi B, Ané C, Simon MF, Delgado-Salinas A, Luckow M, Sanderson MJ. Locating evolutionary precursors on a phylogenetic tree. Evolution; International Journal of Organic Evolution. 66: 3918-30. PMID 23206146 DOI: 10.1111/J.1558-5646.2012.01720.X  1
2011 Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, ... ... Sanderson M, et al. The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Frontiers in Plant Science. 2: 34. PMID 22645531 DOI: 10.3389/Fpls.2011.00034  1
2011 Sanderson MJ, McMahon MM, Steel M. Terraces in phylogenetic tree space. Science (New York, N.Y.). 333: 448-50. PMID 21680810 DOI: 10.1126/Science.1206357  1
2011 Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS, Bell CD, Latvis M, Crawley S, Black C, Diouf D, ... ... Sanderson MJ, et al. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany. 98: 704-30. PMID 21613169 DOI: 10.3732/Ajb.1000404  1
2011 Wertheim JO, Sanderson MJ. Estimating diversification rates: how useful are divergence times? Evolution; International Journal of Organic Evolution. 65: 309-20. PMID 21044059 DOI: 10.1111/J.1558-5646.2010.01159.X  1
2010 Marazzi B, Sanderson MJ. Large-scale patterns of diversification in the widespread legume genus Senna and the evolutionary role of extrafloral nectaries. Evolution; International Journal of Organic Evolution. 64: 3570-92. PMID 21133898 DOI: 10.1111/J.1558-5646.2010.01086.X  1
2010 Wertheim JO, Sanderson MJ, Worobey M, Bjork A. Relaxed molecular clocks, the bias-variance trade-off, and the quality of phylogenetic inference. Systematic Biology. 59: 1-8. PMID 20525616 DOI: 10.1093/Sysbio/Syp072  1
2010 Sanderson MJ, McMahon MM, Steel M. Phylogenomics with incomplete taxon coverage: the limits to inference. Bmc Evolutionary Biology. 10: 155. PMID 20500873 DOI: 10.1186/1471-2148-10-155  1
2010 Cranston KA, Hurwitz B, Sanderson MJ, Ware D, Wing RA, Stein L. Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae) Systematic Botany. 35: 512-523. DOI: 10.1600/036364410792495872  1
2010 Cranston KA, Hurwitz B, Sanderson MJ, Ware D, Wing RA, Stein L. Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae) Systematic Botany. 35: 512-523. DOI: 10.1600/036364410792495872  1
2010 Steel M, Sanderson MJ. Characterizing phylogenetically decisive taxon coverage Applied Mathematics Letters. 23: 82-86. DOI: 10.1016/J.Aml.2009.08.009  1
2009 Ané C, Eulenstein O, Piaggio-Talice R, Sanderson MJ. Groves of phylogenetic trees Annals of Combinatorics. 13: 139-167. DOI: 10.1007/S00026-009-0017-X  1
2008 Scherson RA, Vidal R, Sanderson MJ. Phylogeny, biogeography, and rates of diversification of New World Astragalus (Leguminosae) with an emphasis on South American radiations. American Journal of Botany. 95: 1030-9. PMID 21632423 DOI: 10.3732/Ajb.0800017  1
2008 Kim J, Sanderson MJ. Penalized likelihood phylogenetic inference: bridging the parsimony-likelihood gap. Systematic Biology. 57: 665-74. PMID 18853355 DOI: 10.1080/10635150802422274  1
2008 Sanderson MJ. Phylogenetic signal in the eukaryotic tree of life. Science (New York, N.Y.). 321: 121-3. PMID 18599787 DOI: 10.1126/Science.1154449  1
2008 Sanderson MJ, Boss D, Chen D, Cranston KA, Wehe A. The PhyLoTA Browser: processing GenBank for molecular phylogenetics research. Systematic Biology. 57: 335-46. PMID 18570030 DOI: 10.1080/10635150802158688  1
2007 Sanderson MJ, McMahon MM. Inferring angiosperm phylogeny from EST data with widespread gene duplication. Bmc Evolutionary Biology. 7: S3. PMID 17288576 DOI: 10.1186/1471-2148-7-S1-S3  1
2007 Sanderson MJ. L. A. S. Johnson review no. 9. Construction and annotation of large phylogenetic trees Australian Systematic Botany. 20: 287-301. DOI: 10.1071/Sb07006  1
2007 Hackett JD, Su Yoon H, Butterfield NJ, Sanderson MJ, Bhattacharya D. Plastid Endosymbiosis. Sources and Timing of the Major Events. Evolution of Primary Producers in the Sea. 109-132. DOI: 10.1016/B978-012370518-1/50008-4  1
2006 Smythe AB, Sanderson MJ, Nadler SA. Nematode small subunit phylogeny correlates with alignment parameters. Systematic Biology. 55: 972-92. PMID 17345678 DOI: 10.1080/10635150601089001  1
2006 McMahon MM, Sanderson MJ. Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes. Systematic Biology. 55: 818-36. PMID 17060202 DOI: 10.1080/10635150600999150  1
2006 Chen D, Eulenstein O, Fernández-Baca D, Sanderson M. Minimum-flip supertrees: Complexity and algorithms Ieee/Acm Transactions On Computational Biology and Bioinformatics. 3: 165-173. PMID 17048402 DOI: 10.1109/Tcbb.2006.26  1
2006 Burleigh JG, Driskell AC, Sanderson MJ. Supertree bootstrapping methods for assessing phylogenetic variation among genes in genome-scale data sets. Systematic Biology. 55: 426-40. PMID 16861207 DOI: 10.1080/10635150500541722  1
2006 Strong DR, Sanderson M. Cenozoic insect-plant diversification in the tropics. Proceedings of the National Academy of Sciences of the United States of America. 103: 10827-8. PMID 16832057 DOI: 10.1073/Pnas.0603510103  1
2006 O'Meara BC, Ané C, Sanderson MJ, Wainwright PC. Testing for different rates of continuous trait evolution using likelihood. Evolution; International Journal of Organic Evolution. 60: 922-33. PMID 16817533 DOI: 10.1554/05-130.1  1
2006 Sanderson MJ. Paloverde: an OpenGL 3D phylogeny browser. Bioinformatics (Oxford, England). 22: 1004-6. PMID 16500938 DOI: 10.1093/Bioinformatics/Btl044  1
2005 Magallón SA, Sanderson MJ. Angiosperm divergence times: the effect of genes, codon positions, and time constraints. Evolution; International Journal of Organic Evolution. 59: 1653-70. PMID 16329238 DOI: 10.1554/04-565.1  1
2005 Ané C, Sanderson MJ. Missing the forest for the trees: Phylogenetic compression and its implications for inferring complex evolutionary histories Systematic Biology. 54: 146-157. PMID 15805016 DOI: 10.1080/10635150590905984  1
2005 Ané C, Burleigh JG, McMahon MM, Sanderson MJ. Covarion structure in plastid genome evolution: a new statistical test. Molecular Biology and Evolution. 22: 914-24. PMID 15625184 DOI: 10.1093/Molbev/Msi076  1
2005 Scherson RA, Choi HK, Cook DR, Sanderson MJ. Phylogenetics of New World Astragalus: Screening of novel nuclear loci for the reconstruction of phylogenies at low taxonomic levels Brittonia. 57: 354-366. DOI: 10.1663/0007-196X(2005)057[0354:Ponwas]2.0.Co;2  1
2004 Wojciechowski MF, Lavin M, Sanderson MJ. A phylogeny of legumes (Leguminosae) based on analysis of the plastid matK gene resolves many well-supported subclades within the family. American Journal of Botany. 91: 1846-62. PMID 21652332 DOI: 10.3732/Ajb.91.11.1846  1
2004 Sanderson MJ, Thorne JL, Wikström N, Bremer K. Molecular evidence on plant divergence times. American Journal of Botany. 91: 1656-65. PMID 21652315 DOI: 10.3732/Ajb.91.10.1656  1
2004 Driskell AC, Ané C, Burleigh JG, McMahon MM, O'meara BC, Sanderson MJ. Prospects for building the tree of life from large sequence databases. Science (New York, N.Y.). 306: 1172-4. PMID 15539599 DOI: 10.1126/Science.1102036  1
2004 Near TJ, Sanderson MJ. Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 359: 1477-83. PMID 15519966 DOI: 10.1098/Rstb.2004.1523  1
2004 Grotkopp E, Rejmánek M, Sanderson MJ, Rost TL. Evolution of genome size in pines (Pinus) and its life-history correlates: supertree analyses. Evolution; International Journal of Organic Evolution. 58: 1705-29. PMID 15446425 DOI: 10.1111/J.0014-3820.2004.Tb00456.X  1
2004 Eulenstein O, Chen D, Burleigh JG, Fernández-Baca D, Sanderson MJ. Performance of flip supertree construction with a heuristic algorithm. Systematic Biology. 53: 299-308. PMID 15205054 DOI: 10.1080/10635150490423719  1
2004 Scotland RW, Sanderson MJ. The significance of few versus many in the tree of life. Science (New York, N.Y.). 303: 643. PMID 14752153 DOI: 10.1126/Science.1091483  1
2003 Sanderson MJ. Molecular data from 27 proteins do not support a Precambrian origin of land plants. American Journal of Botany. 90: 954-6. PMID 21659192 DOI: 10.3732/Ajb.90.6.954  1
2003 Sanderson MJ, Driskell AC. The challenge of constructing large phylogenetic trees. Trends in Plant Science. 8: 374-9. PMID 12927970 DOI: 10.1016/S1360-1385(03)00165-1  1
2003 Piel WH, Sanderson MJ, Donoghue MJ. The small-world dynamics of tree networks and data mining in phyloinformatics. Bioinformatics (Oxford, England). 19: 1162-8. PMID 12801879 DOI: 10.1093/Bioinformatics/Btg131  1
2003 Sanderson MJ, Driskell AC, Ree RH, Eulenstein O, Langley S. Obtaining maximal concatenated phylogenetic data sets from large sequence databases. Molecular Biology and Evolution. 20: 1036-42. PMID 12777519 DOI: 10.1093/Molbev/Msg115  1
2003 Sanderson MJ. r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics (Oxford, England). 19: 301-2. PMID 12538260 DOI: 10.1093/Bioinformatics/19.2.301  1
2002 Magallón S, Sanderson MJ. Relationships among seed plants inferred from highly conserved genes: sorting conflicting phylogenetic signals among ancient lineages. American Journal of Botany. 89: 1991-2006. PMID 21665628 DOI: 10.3732/Ajb.89.12.1991  1
2002 Sanderson MJ. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Molecular Biology and Evolution. 19: 101-9. PMID 11752195 DOI: 10.1093/Oxfordjournals.Molbev.A003974  1
2002 Sanderson MJ, Shaffer HB. Troubleshooting molecular phylogenetic analyses Annual Review of Ecology and Systematics. 33: 49-72. DOI: 10.1146/Annurev.Ecolsys.33.010802.150509  1
2002 Hu JM, Lavin M, Wojciechowski MF, Sanderson MJ, Davis JI. Phylogenetic analysis of nuclear ribosomal ITS/5.8S sequences in the tribe Millettieae (Fabaceae): Poecilanthe-Cyclolobium, the core Millettieae, and the Callerya group Systematic Botany. 27: 722-733. DOI: 10.1043/0363-6445-27.4.722  1
2002 Chen D, Eulenstein O, Fernández-Baca D, Sanderson M. Supertrees by flipping Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2387: 391-400.  1
2001 Bininda-Emonds OR, Sanderson MJ. Assessment of the accuracy of matrix representation with parsimony analysis supertree construction. Systematic Biology. 50: 565-79. PMID 12116654 DOI: 10.1080/10635150120358  1
2001 Magallón S, Sanderson MJ. Absolute diversification rates in angiosperm clades. Evolution; International Journal of Organic Evolution. 55: 1762-80. PMID 11681732 DOI: 10.1111/J.0014-3820.2001.Tb00826.X  1
2001 Bininda-Emonds OR, Brady SG, Kim J, Sanderson MJ. Scaling of accuracy in extremely large phylogenetic trees. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 547-58. PMID 11262972 DOI: 10.1142/9789814447362_0053  1
2001 Lavin M, Wojciechowski MF, Richman A, Rotella J, Sanderson MJ, Matos AB. Identifying tertiary radiations of fabaceae in the greater antilles: Alternatives to cladistic vicariance analysis International Journal of Plant Sciences. 162: S53-S76. DOI: 10.1086/323474  1
2000 Sanderson MJ, Kim J. Parametric phylogenetics? Systematic Biology. 49: 817-29. PMID 12116443  1
2000 Sanderson MJ, Wojciechowski MF. Improved bootstrap confidence limits in large-scale phylogenies, with an example from Neo-Astragalus (Leguminosae). Systematic Biology. 49: 671-85. PMID 12116433 DOI: 10.1080/106351500750049761  1
2000 Sanderson MJ, Wojciechowski MF, Hu JM, Khan TS, Brady SG. Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants. Molecular Biology and Evolution. 17: 782-97. PMID 10779539 DOI: 10.1093/Oxfordjournals.Molbev.A026357  1
2000 Hu JM, Lavin M, Wojciechowski MF, Sanderson MJ. Phylogenetic systematics of the tribe Millettieae (Leguminosae) based on chloroplast trnK/matK sequences and its implications for evolutionary patterns in Papilionoideae. American Journal of Botany. 87: 418-30. PMID 10719003 DOI: 10.2307/2656638  1
1999 Wagstaff SJ, Heenan PB, Sanderson MJ. Classification, origins, and patterns of diversification in New Zealand Carmichaelinae (Fabaceae) American Journal of Botany. 86: 1346-1356. DOI: 10.2307/2656781  1
1999 Wojciechowski MF, Sanderson MJ, Hu JM. Evidence on the monophyly of Astragalus (Fabaceae) and its major subgroups based on nuclear ribosomal DNA ITS and chloroplast DNA trnL intron data Systematic Botany. 24: 409-437. DOI: 10.2307/2419698  1
1998 Sanderson MJ, Purvis A, Henze C. Phylogenetic supertrees: Assembling the trees of life. Trends in Ecology & Evolution. 13: 105-9. PMID 21238221 DOI: 10.1016/S0169-5347(97)01242-1  1
1998 Baldwin BG, Sanderson MJ. Age and rate of diversification of the Hawaiian silversword alliance (Compositae). Proceedings of the National Academy of Sciences of the United States of America. 95: 9402-6. PMID 9689092 DOI: 10.1073/Pnas.95.16.9402  1
1997 Sanderson MJ. A nonparametric approach to estimating divergence times in the absence of rate constancy Molecular Biology and Evolution. 14: 1218-1231. DOI: 10.1093/Oxfordjournals.Molbev.A025731  1
1996 Sanderson MJ, Donoghue MJ. Reconstructing shifts in diversification rates on phylogenetic trees. Trends in Ecology & Evolution. 11: 15-20. PMID 21237745 DOI: 10.1016/0169-5347(96)81059-7  1
1996 Sanderson MJ, Wojciechowski MF. Diversification rates in a temperate legume clade: Are there "so many species" of Astragalus (Fabaceae)? American Journal of Botany. 83: 1488-1502. DOI: 10.2307/2446103  1
1996 Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ. Erratum: The ITS region of nuclear ribosomal DNA: A valuable source of evidence on angiosperm phylogeny (Annals of the Missouri Botanical Garden (1995) 82 (247-277)) Annals of the Missouri Botanical Garden. 83. DOI: 10.2307/2399971  0.96
1996 Sanderson MJ. How many taxa must be sampled to identify the root node of a large clade? Systematic Biology. 45: 168-173. DOI: 10.1093/Sysbio/45.2.168  1
1995 Sanderson MJ. Objections to bootstrapping phylogenies: A critique Systematic Biology. 44: 299-320. DOI: 10.1093/Sysbio/44.3.299  1
1994 Sanderson MJ, Donoghue MJ. Shifts in diversification rate with the origin of angiosperms. Science (New York, N.Y.). 264: 1590-3. PMID 17769604 DOI: 10.1126/Science.264.5165.1590  1
1994 Sanderson MJ. Reconstructing the history of evolutionary processes using maximum likelihood Society of General Physiologists Series. 49: 13-26. PMID 7939892  1
1993 Sanderson MJ, Baldwin BG, Bharathan G, Campbell CS, Von Dohlen C, Ferguson D, Porter JM, Wojciechowski MF, Donoghue MJ. The growth of phylogenetic information and the need for a phylogenetic data base Systematic Biology. 42: 562-568. DOI: 10.1093/Sysbio/42.4.562  1
1993 Sanderson MJ, Bharathan G. Does cladistic information affect inferences about branching rates? Systematic Biology. 42: 1-17. DOI: 10.1093/Sysbio/42.1.1  1
1992 Sanderson MJ, Doyle JJ. Reconstruction of organismal and gene phylogenies from data on multigene families: Concerted evolution, homoplasy, and confidence Systematic Biology. 41: 4-17. DOI: 10.1093/Sysbio/41.1.4  1
1991 Sanderson MJ. In search of homoplastic tendenices: statistical inference of topological patterns in homoplasy Evolution. 45: 351-358.  1
1989 Sanderson MJ, Donoghue MJ. PATTERNS OF VARIATION IN LEVELS OF HOMOPLASY. Evolution; International Journal of Organic Evolution. 43: 1781-1795. PMID 28564338 DOI: 10.1111/J.1558-5646.1989.Tb02626.X  0.96
1989 Sanderson MJ. Confidence limits on phylogenies: the bootstrap revisited Cladistics. 5: 113-129. DOI: 10.1111/J.1096-0031.1989.Tb00559.X  1
1988 Hopf FA, Michod RE, Sanderson MJ. The effect of the reproductive system on mutation load. Theoretical Population Biology. 33: 243-65. PMID 3232115 DOI: 10.1016/0040-5809(88)90015-9  1
1982 Brown JS, Sanderson MJ, Michod RE. Evolution of social behavior by reciprocation Journal of Theoretical Biology. 99: 319-339. DOI: 10.1016/0022-5193(82)90008-X  1
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