Luke J. Harmon, Ph.D. - Publications

Affiliations: 
University of Idaho, Moscow, ID, United States 

87 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Harmon LJ, Andreazzi CS, Débarre F, Drury J, Goldberg EE, Martins AB, Melián CJ, Narwani A, Nuismer SL, Pennell MW, Rudman SM, Seehausen O, Silvestro D, Weber M, Matthews B. Detecting the Macroevolutionary Signal of Species Interactions. Journal of Evolutionary Biology. PMID 30968509 DOI: 10.1111/jeb.13477  0.72
2019 Henao Diaz LF, Harmon LJ, Sugawara MTC, Miller ET, Pennell MW. Macroevolutionary diversification rates show time dependency. Proceedings of the National Academy of Sciences of the United States of America. PMID 30910958 DOI: 10.1073/pnas.1818058116  0.52
2019 Sarver BAJ, Pennell MW, Brown JW, Keeble S, Hardwick KM, Sullivan J, Harmon LJ. The choice of tree prior and molecular clock does not substantially affect phylogenetic inferences of diversification rates. Peerj. 7: e6334. PMID 30886768 DOI: 10.7717/peerj.6334  0.52
2018 Melián CJ, Matthews B, de Andreazzi CS, Rodríguez JP, Harmon LJ, Fortuna MA. Deciphering the Interdependence between Ecological and Evolutionary Networks. Trends in Ecology & Evolution. PMID 29804936 DOI: 10.1016/j.tree.2018.04.009  0.72
2017 Hagey TJ, Harte S, Vickers M, Harmon LJ, Schwarzkopf L. There's more than one way to climb a tree: Limb length and microhabitat use in lizards with toe pads. Plos One. 12: e0184641. PMID 28953920 DOI: 10.1371/journal.pone.0184641  0.4
2017 Hagey TJ, Uyeda JC, Crandell KE, Cheney JA, Autumn K, Harmon LJ. Tempo and mode of performance evolution across multiple independent origins of adhesive toe pads in lizards. Evolution; International Journal of Organic Evolution. PMID 28745397 DOI: 10.1111/evo.13318  0.4
2017 Weber MG, Wagner CE, Best RJ, Harmon LJ, Matthews B. Evolution in a Community Context: On Integrating Ecological Interactions and Macroevolution. Trends in Ecology & Evolution. PMID 28215448 DOI: 10.1016/j.tree.2017.01.003  0.72
2016 Uyeda JC, Harmon LJ, Blank CE. A Comprehensive Study of Cyanobacterial Morphological and Ecological Evolutionary Dynamics through Deep Geologic Time. Plos One. 11: e0162539. PMID 27649395 DOI: 10.1371/journal.pone.0162539  0.4
2016 Hagey TJ, Puthoff JB, Crandell KE, Autumn K, Harmon LJ. Modeling observed animal performance using the Weibull distribution. The Journal of Experimental Biology. PMID 26994180 DOI: 10.1242/jeb.129940  1
2015 Pennell MW, FitzJohn RG, Cornwell WK, Harmon LJ. Model Adequacy and the Macroevolution of Angiosperm Functional Traits. The American Naturalist. 186: E33-E50. PMID 26655160 DOI: 10.1086/682022  1
2015 Tank DC, Eastman JM, Pennell MW, Soltis PS, Soltis DE, Hinchliff CE, Brown JW, Sessa EB, Harmon LJ. Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications. The New Phytologist. 207: 454-67. PMID 26053261 DOI: 10.1111/nph.13491  1
2015 Harmon LJ, Harrison S. Species diversity is dynamic and unbounded at local and continental scales. The American Naturalist. 185: 584-93. PMID 25905502 DOI: 10.1086/680859  1
2015 Rosindell J, Harmon LJ, Etienne RS. Unifying ecology and macroevolution with individual-based theory. Ecology Letters. 18: 472-82. PMID 25818618 DOI: 10.1111/ele.12430  1
2015 Hardwick KM, Harmon LJ, Hardwick SD, Rosenblum EB. When field experiments yield unexpected results: lessons learned from measuring selection in White Sands lizards. Plos One. 10: e0118560. PMID 25714838 DOI: 10.1371/journal.pone.0118560  1
2015 Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Harmon LJ, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/journal.pbio.1002033  1
2015 Nuismer SL, Harmon LJ. Predicting rates of interspecific interaction from phylogenetic trees. Ecology Letters. 18: 17-27. PMID 25349102 DOI: 10.1111/ele.12384  1
2015 Des Roches S, Harmon LJ, Rosenblum EB. Colonization of a novel depauperate habitat leads to trophic niche shifts in three desert lizard species Oikos. DOI: 10.1111/oik.02493  1
2014 Muschick M, Nosil P, Roesti M, Dittmann MT, Harmon L, Salzburger W. Testing the stages model in the adaptive radiation of cichlid fishes in East African Lake Tanganyika. Proceedings. Biological Sciences / the Royal Society. 281. PMID 25274371 DOI: 10.1098/rspb.2014.0605  1
2014 Uyeda JC, Harmon LJ. A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative data. Systematic Biology. 63: 902-18. PMID 25077513 DOI: 10.1093/sysbio/syu057  0.4
2014 Pennell MW, Eastman JM, Slater GJ, Brown JW, Uyeda JC, FitzJohn RG, Alfaro ME, Harmon LJ. geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees. Bioinformatics (Oxford, England). 30: 2216-8. PMID 24728855 DOI: 10.1093/bioinformatics/btu181  1
2014 Davis CC, Schaefer H, Xi Z, Baum DA, Donoghue MJ, Harmon LJ. Long-term morphological stasis maintained by a plant-pollinator mutualism. Proceedings of the National Academy of Sciences of the United States of America. 111: 5914-9. PMID 24706921 DOI: 10.1073/pnas.1403157111  1
2014 Wagner CE, Harmon LJ, Seehausen O. Cichlid species-area relationships are shaped by adaptive radiations that scale with area. Ecology Letters. 17: 583-92. PMID 24602171 DOI: 10.1111/ele.12260  1
2014 Anderson CJ, Harmon L. Ecological and mutation-order speciation in digital organisms. The American Naturalist. 183: 257-68. PMID 24464199 DOI: 10.1086/674359  1
2014 Pennell MW, Harmon LJ, Uyeda JC. Speciation is unlikely to drive divergence rates. Trends in Ecology & Evolution. 29: 72-3. PMID 24418606 DOI: 10.1016/j.tree.2013.12.010  1
2014 Pennell MW, Harmon LJ, Uyeda JC. Is there room for punctuated equilibrium in macroevolution? Trends in Ecology & Evolution. 29: 23-32. PMID 23978567 DOI: 10.1016/j.tree.2013.07.004  1
2014 Des Roches S, Torresdal J, Morgan TW, Harmon LJ, Rosenblum EB. Beyond black and white: Divergent behaviour and performance in three rapidly evolving lizard species at White Sands Biological Journal of the Linnean Society. 111: 169-182. DOI: 10.1111/bij.12165  1
2014 Des Roches S, Brinkmeyer MS, Harmon LJ, Rosenblum EB. Ecological release and directional change in White Sands lizard trophic ecomorphology Evolutionary Ecology. 29. DOI: 10.1007/s10682-014-9740-9  1
2014 Hagey TJ, Puthoff JB, Holbrook M, Harmon LJ, Autumn K. Variation in setal micromechanics and performance of two gecko species Zoomorphology. 133: 111-126. DOI: 10.1007/s00435-013-0207-2  1
2013 Harmon LJ, Baumes J, Hughes C, Soberon J, Specht CD, Turner W, Lisle C, Thacker RW. Arbor: comparative analysis workflows for the tree of life. Plos Currents. 5. PMID 23811960 DOI: 10.1371/currents.tol.099161de5eabdee073fd3d21a44518dc  1
2013 Pennell MW, Harmon LJ. An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology. Annals of the New York Academy of Sciences. 1289: 90-105. PMID 23773094 DOI: 10.1111/nyas.12157  1
2013 Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, et al. Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. Bmc Bioinformatics. 14: 158. PMID 23668630 DOI: 10.1186/1471-2105-14-158  1
2013 Des Roches S, Shurin JB, Schluter D, Harmon LJ. Ecological and evolutionary effects of stickleback on community structure. Plos One. 8: e59644. PMID 23573203 DOI: 10.1371/journal.pone.0059644  1
2013 Tyerman JG, Ponciano JM, Joyce P, Forney LJ, Harmon LJ. The evolution of antibiotic susceptibility and resistance during the formation of Escherichia coli biofilms in the absence of antibiotics. Bmc Evolutionary Biology. 13: 22. PMID 23356665 DOI: 10.1186/1471-2148-13-22  1
2013 Rosindell J, Harmon LJ. A unified model of species immigration, extinction and abundance on islands Journal of Biogeography. 40: 1107-1118. DOI: 10.1111/jbi.12064  1
2013 Slater GJ, Harmon LJ. Unifying fossils and phylogenies for comparative analyses of diversification and trait evolution Methods in Ecology and Evolution. 4: 699-702. DOI: 10.1111/2041-210X.12091  1
2013 Eastman JM, Harmon LJ, Tank DC. Congruification: Support for time scaling large phylogenetic trees Methods in Ecology and Evolution. 4: 688-691. DOI: 10.1111/2041-210X.12051  1
2012 Slater GJ, Harmon LJ, Alfaro ME. Integrating fossils with molecular phylogenies improves inference of trait evolution. Evolution; International Journal of Organic Evolution. 66: 3931-44. PMID 23206147 DOI: 10.1111/j.1558-5646.2012.01723.x  1
2012 Rosindell J, Harmon LJ. OneZoom: a fractal explorer for the tree of life. Plos Biology. 10: e1001406. PMID 23091419 DOI: 10.1371/journal.pbio.1001406  1
2012 Pennell MW, Sarver BA, Harmon LJ. Trees of unusual size: biased inference of early bursts from large molecular phylogenies. Plos One. 7: e43348. PMID 22957027 DOI: 10.1371/journal.pone.0043348  1
2012 Harmon LJ. An inordinate fondness for eukaryotic diversity. Plos Biology. 10: e1001382. PMID 22952431 DOI: 10.1371/journal.pbio.1001382  1
2012 Ingram T, Harmon LJ, Shurin JB. When should we expect early bursts of trait evolution in comparative data? Predictions from an evolutionary food web model. Journal of Evolutionary Biology. 25: 1902-10. PMID 22779736 DOI: 10.1111/j.1420-9101.2012.02566.x  1
2012 Wagner CE, Harmon LJ, Seehausen O. Ecological opportunity and sexual selection together predict adaptive radiation. Nature. 487: 366-9. PMID 22722840 DOI: 10.1038/nature11144  1
2012 Rosenblum EB, Sarver BA, Brown JW, Des Roches S, Hardwick KM, Hether TD, Eastman JM, Pennell MW, Harmon LJ. Goldilocks Meets Santa Rosalia: An Ephemeral Speciation Model Explains Patterns of Diversification Across Time Scales. Evolutionary Biology. 39: 255-261. PMID 22707806 DOI: 10.1007/s11692-012-9171-x  1
2012 Slater GJ, Harmon LJ, Wegmann D, Joyce P, Revell LJ, Alfaro ME. Fitting models of continuous trait evolution to incompletely sampled comparative data using approximate Bayesian computation. Evolution; International Journal of Organic Evolution. 66: 752-62. PMID 22380438 DOI: 10.1111/j.1558-5646.2011.01474.x  1
2012 Rosindell J, Hubbell SP, He F, Harmon LJ, Etienne RS. The case for ecological neutral theory. Trends in Ecology & Evolution. 27: 203-8. PMID 22341498 DOI: 10.1016/j.tree.2012.01.004  1
2012 Godsoe W, Harmon LJ. How do species interactions affect species distribution models? Ecography. 35: 811-820. DOI: 10.1111/j.1600-0587.2011.07103.x  1
2011 Roches SD, Robertson JM, Harmon LJ, Rosenblum EB. Ecological release in White Sands lizards. Ecology and Evolution. 1: 571-8. PMID 22393523 DOI: 10.1002/ece3.50  1
2011 Eastman JM, Alfaro ME, Joyce P, Hipp AL, Harmon LJ. A novel comparative method for identifying shifts in the rate of character evolution on trees. Evolution; International Journal of Organic Evolution. 65: 3578-89. PMID 22133227 DOI: 10.1111/j.1558-5646.2011.01401.x  1
2011 Eastman JM, Harmon LJ, LA HJ, Joyce P, Forney LJ. The onion model, a simple neutral model for the evolution of diversity in bacterial biofilms. Journal of Evolutionary Biology. 24: 2496-504. PMID 21929684 DOI: 10.1111/j.1420-9101.2011.02377.x  1
2011 Davies TJ, Smith GF, Bellstedt DU, Boatwright JS, Bytebier B, Cowling RM, Forest F, Harmon LJ, Muasya AM, Schrire BD, Steenkamp Y, van der Bank M, Savolainen V. Extinction risk and diversification are linked in a plant biodiversity hotspot. Plos Biology. 9: e1000620. PMID 21629678 DOI: 10.1371/journal.pbio.1000620  1
2011 Carlson BA, Hasan SM, Hollmann M, Miller DB, Harmon LJ, Arnegard ME. Brain evolution triggers increased diversification of electric fishes. Science (New York, N.Y.). 332: 583-6. PMID 21527711 DOI: 10.1126/science.1201524  1
2011 McInnes L, Baker WJ, Barraclough TG, Dasmahapatra KK, Goswami A, Harmon LJ, Morlon H, Purvis A, Rosindell J, Thomas GH, Turvey ST, Phillimore AB. Integrating ecology into macroevolutionary research. Biology Letters. 7: 644-6. PMID 21527505 DOI: 10.1098/rsbl.2011.0358  1
2011 Brock CD, Harmon LJ, Alfaro ME. Testing for temporal variation in diversification rates when sampling is incomplete and nonrandom. Systematic Biology. 60: 410-9. PMID 21378083 DOI: 10.1093/sysbio/syr007  1
2011 Smith KL, Harmon LJ, Shoo LP, Melville J. Evidence of constrained phenotypic evolution in a cryptic species complex of agamid lizards. Evolution; International Journal of Organic Evolution. 65: 976-92. PMID 21166790 DOI: 10.1111/j.1558-5646.2010.01211.x  1
2011 Rosenblum EB, Harmon LJ. "Same same but different": replicated ecological speciation at White Sands. Evolution; International Journal of Organic Evolution. 65: 946-60. PMID 21073450 DOI: 10.1111/j.1558-5646.2010.01190.x  1
2011 Stack JC, Harmon LJ, O'Meara B. RBrownie: An R package for testing hypotheses about rates of evolutionary change Methods in Ecology and Evolution. 2: 660-662. DOI: 10.1111/j.2041-210X.2011.00112.x  1
2010 Arnegard ME, McIntyre PB, Harmon LJ, Zelditch ML, Crampton WG, Davis JK, Sullivan JP, Lavoué S, Hopkins CD. Sexual signal evolution outpaces ecological divergence during electric fish species radiation. The American Naturalist. 176: 335-56. PMID 20653442 DOI: 10.1086/655221  1
2010 Matthews B, Harmon LJ, M'Gonigle L, Marchinko KB, Schaschl H. Sympatric and allopatric divergence of MHC genes in threespine stickleback. Plos One. 5: e10948. PMID 20585386 DOI: 10.1371/journal.pone.0010948  1
2010 Yoder JB, Clancey E, Des Roches S, Eastman JM, Gentry L, Godsoe W, Hagey TJ, Jochimsen D, Oswald BP, Robertson J, Sarver BA, Schenk JJ, Spear SF, Harmon LJ. Ecological opportunity and the origin of adaptive radiations. Journal of Evolutionary Biology. 23: 1581-96. PMID 20561138 DOI: 10.1111/j.1420-9101.2010.02029.x  1
2010 Harmon LJ, Losos JB, Jonathan Davies T, Gillespie RG, Gittleman JL, Bryan Jennings W, Kozak KH, McPeek MA, Moreno-Roark F, Near TJ, Purvis A, Ricklefs RE, Schluter D, Schulte Ii JA, Seehausen O, et al. Early bursts of body size and shape evolution are rare in comparative data. Evolution; International Journal of Organic Evolution. 64: 2385-96. PMID 20455932 DOI: 10.1111/j.1558-5646.2010.01025.x  1
2010 Harmon L. Journal club. An evolutionary biologist ponders the pace of evolution. Nature. 463: 1003. PMID 20182473 DOI: 10.1038/4631003e  1
2010 Harmon LJ, Glor RE. Poor statistical performance of the Mantel test in phylogenetic comparative analyses. Evolution; International Journal of Organic Evolution. 64: 2173-8. PMID 20163450 DOI: 10.1111/j.1558-5646.2010.00973.x  1
2010 Harmon LJ, Braude S. Conservation of small populations: Effective population sizes, inbreeding, and the 50/500 rule An Introduction to Methods and Models in Ecology, Evolution, and Conservation Biology. 125-138.  1
2009 Bailey JK, Hendry AP, Kinnison MT, Post DM, Palkovacs EP, Pelletier F, Harmon LJ, Schweitzer JA. From genes to ecosystems: an emerging synthesis of eco-evolutionary dynamics. Symposium 7, 94th Ecological Society of America Meeting, Albuquerque, New Mexico, USA, August 2009. The New Phytologist. 184: 746-9. PMID 20021593 DOI: 10.1111/j.1469-8137.2009.03081.x  1
2009 Santini F, Harmon LJ, Carnevale G, Alfaro ME. Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes. Bmc Evolutionary Biology. 9: 194. PMID 19664233 DOI: 10.1186/1471-2148-9-194  1
2009 Alfaro ME, Santini F, Brock C, Alamillo H, Dornburg A, Rabosky DL, Carnevale G, Harmon LJ. Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates. Proceedings of the National Academy of Sciences of the United States of America. 106: 13410-4. PMID 19633192 DOI: 10.1073/pnas.0811087106  1
2009 Ingram T, Harmon LJ, Shurin JB. Niche evolution, trophic structure, and species turnover in model food webs. The American Naturalist. 174: 56-67. PMID 19459779 DOI: 10.1086/599301  1
2009 Harmon LJ, Matthews B, Des Roches S, Chase JM, Shurin JB, Schluter D. Evolutionary diversification in stickleback affects ecosystem functioning. Nature. 458: 1167-70. PMID 19339968 DOI: 10.1038/nature07974  1
2009 Nosil P, Harmon LJ, Seehausen O. Ecological explanations for (incomplete) speciation. Trends in Ecology & Evolution. 24: 145-56. PMID 19185951 DOI: 10.1016/j.tree.2008.10.011  1
2008 Pinto G, Mahler DL, Harmon LJ, Losos JB. Testing the island effect in adaptive radiation: rates and patterns of morphological diversification in Caribbean and mainland Anolis lizards. Proceedings. Biological Sciences / the Royal Society. 275: 2749-57. PMID 18713721 DOI: 10.1098/rspb.2008.0686  1
2008 Revell LJ, Harmon LJ, Collar DC. Phylogenetic signal, evolutionary process, and rate. Systematic Biology. 57: 591-601. PMID 18709597 DOI: 10.1080/10635150802302427  1
2008 Harmon LJ, Melville J, Larson A, Losos JB. The role of geography and ecological opportunity in the diversification of day geckos (Phelsuma). Systematic Biology. 57: 562-73. PMID 18686194 DOI: 10.1080/10635150802304779  1
2008 Harmon LJ, Weir JT, Brock CD, Glor RE, Challenger W. GEIGER: investigating evolutionary radiations. Bioinformatics (Oxford, England). 24: 129-31. PMID 18006550 DOI: 10.1093/bioinformatics/btm538  1
2008 Revell LJ, Harmon LJ. Testing quantitative genetic hypotheses about the evolutionary rate matrix for continuous characters Evolutionary Ecology Research. 10: 311-331.  1
2007 Vellend M, Harmon LJ, Lockwood JL, Mayfield MM, Hughes AR, Wares JP, Sax DF. Effects of exotic species on evolutionary diversification. Trends in Ecology & Evolution. 22: 481-8. PMID 17346848 DOI: 10.1016/j.tree.2007.02.017  1
2007 Nicholson KE, Harmon LJ, Losos JB. Evolution of Anolis lizard dewlap diversity. Plos One. 2: e274. PMID 17342208 DOI: 10.1371/journal.pone.0000274  1
2007 Revell LJ, Harmon LJ, Langerhans RB, Kolbe JJ. A phylogenetic approach to determining the importance of constraint on phenotypic evolution in the neotropical lizard Anolis cristatellus Evolutionary Ecology Research. 9: 261-282.  1
2006 Harmon LJ, Gibson R. Multivariate phenotypic evolution among island and mainland populations of the ornate day gecko, Phelsuma ornata. Evolution; International Journal of Organic Evolution. 60: 2622-32. PMID 17263121 DOI: 10.1554/06-347.1  1
2006 Melville J, Harmon LJ, Losos JB. Intercontinental community convergence of ecology and morphology in desert lizards. Proceedings. Biological Sciences / the Royal Society. 273: 557-63. PMID 16537126 DOI: 10.1098/rspb.2005.3328  1
2005 Harmon LJ, Losos JB. The effect of intraspecific sample size on type I and type II error rates in comparative studies. Evolution; International Journal of Organic Evolution. 59: 2705-10. PMID 16526516 DOI: 10.1554/05-224.1  1
2005 Revell LJ, Harmon LJ, Glor RE. Underparameterized model of sequence evolution leads to bias in the estimation of diversification rates from molecular phylogenies. Systematic Biology. 54: 973-83. PMID 16385778  1
2005 Kozak KH, Larson A, Bonett RM, Harmon LJ. Phylogenetic analysis of ecomorphological divergence, community structure, and diversification rates in dusky salamanders (Plethodontidae: Desmognathus). Evolution; International Journal of Organic Evolution. 59: 2000-16. PMID 16261737  1
2005 Weisrock DW, Harmon LJ, Larson A. Resolving deep phylogenetic relationships in salamanders: analyses of mitochondrial and nuclear genomic data. Systematic Biology. 54: 758-77. PMID 16243763 DOI: 10.1080/10635150500234641  1
2005 Harmon LJ, Kolbe JJ, Cheverud JM, Losos JB. Convergence and the multidimensional niche. Evolution; International Journal of Organic Evolution. 59: 409-21. PMID 15807425  1
2005 Harmon LJ, Bauman K, McCloud M, Parks J, Howell S, Losos JB. What free-ranging animals do at the zoo: A study of the behavior and habitat use of opossums (Didelphis virginiana) on the grounds of the St. Louis zoo Zoo Biology. 24: 197-213. DOI: 10.1002/zoo.20046  1
2003 Harmon LJ, Schulte JA, Larson A, Losos JB. Tempo and mode of evolutionary radiation in iguanian lizards. Science (New York, N.Y.). 301: 961-4. PMID 12920297 DOI: 10.1126/science.1084786  1
2002 Harmon LJ. Some observations of the natural history of the prehensile-tailed skink, Corucia zebrata, in the Solomon Islands Herpetological Review. 33: 177-179.  1
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