Nicholas J. Matzke - Publications

Affiliations: 
Integrative Biology University of California, Berkeley, Berkeley, CA 
Website:
http://fisher.berkeley.edu/cteg/members/matzke.html

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Liddell LG, Lee WG, Dale EE, Meudt HM, Matzke NJ. Pioneering polyploids: the impact of whole-genome duplication on biome shifting in New Zealand (Rubiaceae) and (Plantaginaceae). Biology Letters. 17: 20210297. PMID 34464540 DOI: 10.1098/rsbl.2021.0297  0.355
2021 Ogilvie HA, Mendes FK, Vaughan TG, Matzke NJ, Stadler T, Welch D, Drummond AJ. Novel Integrative Modeling of Molecules and Morphology across Evolutionary Timescales. Systematic Biology. PMID 34228807 DOI: 10.1093/sysbio/syab054  0.374
2021 Garcia-R JC, Matzke NJ. Trait-dependent dispersal in rails (Aves: Rallidae): Historical biogeography of a cosmopolitan bird clade. Molecular Phylogenetics and Evolution. 107106. PMID 33601027 DOI: 10.1016/j.ympev.2021.107106  0.39
2020 Lam AR, Sheffield SL, Matzke NJ. Estimating dispersal and evolutionary dynamics in diploporan blastozoans (Echinodermata) across the great Ordovician biodiversification event Paleobiology. 1-23. DOI: 10.1017/Pab.2020.24  0.35
2019 Blom MPK, Matzke NJ, Bragg JG, Arida E, Austin CC, Backlin AR, Carretero MA, Fisher RN, Glaw F, Hathaway SA, Iskandar DT, McGuire JA, Karin BR, Reilly SB, Rittmeyer EN, et al. Habitat preference modulates trans-oceanic dispersal in a terrestrial vertebrate. Proceedings. Biological Sciences. 286: 20182575. PMID 31161911 DOI: 10.1098/Rspb.2018.2575  0.493
2019 Klaus KV, Matzke NJ. Statistical Comparison of Trait-dependent Biogeographical Models indicates that Podocarpaceae Dispersal is influenced by both Seed Cone Traits and Geographical Distance. Systematic Biology. PMID 31099388 DOI: 10.1093/Sysbio/Syz034  0.446
2019 Warren DL, Matzke NJ, Iglesias TL. Evaluating presence‐only species distribution models with discrimination accuracy is uninformative for many applications Journal of Biogeography. 47: 167-180. DOI: 10.1111/Jbi.13705  0.37
2019 Nicolaï MPJ, Matzke NJ. Trait-based range expansion aided in the global radiation of Crocodylidae Global Ecology and Biogeography. 28: 1244-1258. DOI: 10.1111/Geb.12929  0.511
2019 Lu L, Fritsch PW, Matzke NJ, Wang H, Kron KA, Li D, Wiens JJ. Why is fruit colour so variable? Phylogenetic analyses reveal relationships between fruit‐colour evolution, biogeography and diversification Global Ecology and Biogeography. 28: 891-903. DOI: 10.1111/Geb.12900  0.504
2018 Matos-Maraví P, Matzke NJ, Larabee FJ, Clouse RM, Wheeler WC, Sorger DM, Suarez AV, Janda M. Taxon Cycle predictions supported by model-based inference in Indo-Pacific trap-jaw ants (Hymenoptera: Formicidae: Odontomachus). Molecular Ecology. PMID 30106242 DOI: 10.1111/Mec.14835  0.477
2018 Ashman LG, Bragg JG, Doughty P, Hutchinson MN, Bank S, Matzke NJ, Oliver P, Moritz C. Diversification across biomes in a continental lizard radiation. Evolution; International Journal of Organic Evolution. PMID 29972238 DOI: 10.1111/Evo.13541  0.465
2018 Matzke NJ, Irmis RB. Including autapomorphies is important for paleontological tip-dating with clocklike data, but not with non-clock data. Peerj. 6: e4553. PMID 29637019 DOI: 10.7717/Peerj.4553  0.453
2018 McCann J, Jang TS, Macas J, Schneeweiss GM, Matzke NJ, Novák P, Stuessy TF, Villaseñor JL, Weiss-Schneeweiss H. Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae). Systematic Biology. PMID 29562303 DOI: 10.1093/Sysbio/Syy024  0.41
2018 Flammensbeck CK, Pollerspöck J, Schedel FDB, Matzke NJ, Straube N. Of teeth and trees: A fossil tip‐dating approach to infer divergence times of extinct and extant squaliform sharks Zoologica Scripta. 47: 539-557. DOI: 10.1111/Zsc.12299  0.468
2018 Lam AR, Stigall AL, Matzke NJ. Dispersal in the Ordovician: Speciation patterns and paleobiogeographic analyses of brachiopods and trilobites Palaeogeography, Palaeoclimatology, Palaeoecology. 489: 147-165. DOI: 10.1016/J.Palaeo.2017.10.006  0.508
2017 Pérez-Escobar OA, Chomicki G, Condamine FL, Karremans AP, Bogarín D, Matzke NJ, Silvestro D, Antonelli A. Recent origin and rapid speciation of Neotropical orchids in the world's richest plant biodiversity hotspot. The New Phytologist. 215: 891-905. PMID 28631324 DOI: 10.1111/Nph.14629  0.47
2017 Badgley C, Smiley TM, Terry R, Davis EB, DeSantis LR, Fox DL, Hopkins SS, Jezkova T, Matocq MD, Matzke N, McGuire JL, Mulch A, Riddle BR, Roth VL, Samuels JX, et al. Biodiversity and Topographic Complexity: Modern and Geohistorical Perspectives. Trends in Ecology & Evolution. PMID 28196688 DOI: 10.1016/J.Tree.2016.12.010  0.467
2017 Turner AH, Pritchard AC, Matzke NJ. Empirical and Bayesian approaches to fossil-only divergence times: A study across three reptile clades. Plos One. 12: e0169885. PMID 28187191 DOI: 10.1371/Journal.Pone.0169885  0.488
2017 Zhang G, Basharat U, Matzke N, Franz NM. Model selection in statistical historical biogeography of Neotropical insects-the Exophthalmus genus complex (Curculionidae: Entiminae). Molecular Phylogenetics and Evolution. PMID 28057552 DOI: 10.1016/J.Ympev.2016.12.039  0.513
2016 Matzke NJ, Wright A. Inferring node dates from tip dates in fossil Canidae: the importance of tree priors. Biology Letters. 12. PMID 27512133 DOI: 10.1098/Rsbl.2016.0328  0.462
2016 Bapst DW, Wright AM, Matzke NJ, Lloyd GT. Topology, divergence dates, and macroevolutionary inferences vary between different tip-dating approaches applied to fossil theropods (Dinosauria). Biology Letters. 12. PMID 27405380 DOI: 10.1098/Rsbl.2016.0237  0.617
2016 Yuan ZY, Zhou WW, Chen X, Poyarkov NA, Chen HM, Jang-Liaw NH, Chou WH, Matzke NJ, Iizuka K, Min MS, Kuzmin SL, Zhang YP, Cannatella DC, Hillis DM, Che J. Spatiotemporal Diversification of the True Frogs (Genus Rana): A Historical Framework for a Widely Studied Group of Model Organisms. Systematic Biology. PMID 27288482 DOI: 10.1093/Sysbio/Syw055  0.653
2016 Dupin J, Matzke NJ, Särkinen T, Knapp S, Olmstead RG, Bohs L, Smith SD. Bayesian estimation of the global biogeographical history of the Solanaceae Journal of Biogeography. 44: 887-899. DOI: 10.1111/Jbi.12898  0.479
2016 Dam MHV, Matzke NJ. Evaluating the influence of connectivity and distance on biogeographical patterns in the south-western deserts of North America Journal of Biogeography. 43: 1514-1532. DOI: 10.1111/Jbi.12727  0.501
2015 Dembo M, Matzke NJ, Mooers AØ, Collard M. Bayesian analysis of a morphological supermatrix sheds light on controversial fossil hominin relationships. Proceedings. Biological Sciences / the Royal Society. 282. PMID 26202999 DOI: 10.1098/Rspb.2015.0943  0.542
2015 Lawing AM, Matzke NJ. Conservation paleobiology needs phylogenetic methods Ecography. DOI: 10.1111/Ecog.00783  0.733
2015 Meyer EL, Matzke NJ, Williams SJ. Remote sensing of intertidal habitats predicts West Indian topsnail population expansion but reveals scale-dependent bias Journal of Coastal Conservation. 19: 107-118. DOI: 10.1007/S11852-014-0371-7  0.56
2014 Matzke NJ. Model selection in historical biogeography reveals that founder-event speciation is a crucial process in Island Clades. Systematic Biology. 63: 951-70. PMID 25123369 DOI: 10.1093/Sysbio/Syu056  0.455
2014 Gavin DG, Fitzpatrick MC, Gugger PF, Heath KD, Rodríguez-Sánchez F, Dobrowski SZ, Hampe A, Hu FS, Ashcroft MB, Bartlein PJ, Blois JL, Carstens BC, Davis EB, de Lafontaine G, Edwards ME, ... ... Matzke NJ, et al. Climate refugia: joint inference from fossil records, species distribution models and phylogeography. The New Phytologist. 204: 37-54. PMID 25039238 DOI: 10.1111/Nph.12929  0.497
2014 Matzke NJ, Shih PM, Kerfeld CA. Bayesian analysis of congruence of core genes in Prochlorococcus and Synechococcus and implications on horizontal gene transfer. Plos One. 9: e85103. PMID 24465485 DOI: 10.1371/Journal.Pone.0085103  0.384
2013 Alexandrou MA, Swartz BA, Matzke NJ, Oakley TH. Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Molecular Phylogenetics and Evolution. 69: 514-23. PMID 23933489 DOI: 10.1016/J.Ympev.2013.07.026  0.374
2013 Shih PM, Matzke NJ. Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins. Proceedings of the National Academy of Sciences of the United States of America. 110: 12355-60. PMID 23776247 DOI: 10.1073/Pnas.1305813110  0.404
2013 Landis MJ, Matzke NJ, Moore BR, Huelsenbeck JP. Bayesian analysis of biogeography when the number of areas is large. Systematic Biology. 62: 789-804. PMID 23736102 DOI: 10.1093/Sysbio/Syt040  0.74
2013 Wood HM, Matzke NJ, Gillespie RG, Griswold CE. Treating fossils as terminal taxa in divergence time estimation reveals ancient vicariance patterns in the palpimanoid spiders. Systematic Biology. 62: 264-84. PMID 23192838 DOI: 10.1093/Sysbio/Sys092  0.489
2013 Matzke NJ. Probabilistic historical biogeography: new models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing Frontiers of Biogeography. 5. DOI: 10.21425/F5Fbg19694  0.418
2012 Gong Z, Matzke NJ, Ermentrout B, Song D, Vendetti JE, Slatkin M, Oster G. Evolution of patterns on Conus shells. Proceedings of the National Academy of Sciences of the United States of America. 109: E234-41. PMID 22219366 DOI: 10.1073/Pnas.1119859109  0.567
2011 Lippold S, Matzke NJ, Reissmann M, Hofreiter M. Whole mitochondrial genome sequencing of domestic horses reveals incorporation of extensive wild horse diversity during domestication. Bmc Evolutionary Biology. 11: 328. PMID 22082251 DOI: 10.1186/1471-2148-11-328  0.394
2011 Barnosky AD, Matzke N, Tomiya S, Wogan GO, Swartz B, Quental TB, Marshall C, McGuire JL, Lindsey EL, Maguire KC, Mersey B, Ferrer EA. Has the Earth's sixth mass extinction already arrived? Nature. 471: 51-7. PMID 21368823 DOI: 10.1038/Nature09678  0.406
2010 Matzke NJ. The Evolution of Creationist Movements Evolution: Education and Outreach. 3: 145-162. DOI: 10.1007/S12052-010-0233-1  0.323
2006 Pallen MJ, Matzke NJ. From The Origin of Species to the origin of bacterial flagella. Nature Reviews. Microbiology. 4: 784-90. PMID 16953248 DOI: 10.1038/Nrmicro1493  0.352
2004 Powell RL, Matzke N, De Souza C, Clark M, Numata I, Hess LL, Roberts DA. Sources of error in accuracy assessment of thematic land-cover maps in the Brazilian Amazon Remote Sensing of Environment. 90: 221-234. DOI: 10.1016/J.Rse.2003.12.007  0.32
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